INFERNAL1/a [1.1.5 | Sep 2023] NAME sR55 ACC RF01307 DESC Small nucleolar RNA sR55 STATES 199 NODES 65 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 17:10:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01307/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.128906 CKSUM 1033221460 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.50 EFP7GF -9.0494 0.71883 ECMLC 0.78749 -5.84063 1.79175 1600000 489177 0.002453 ECMGC 0.36675 -20.38075 -5.29404 1600000 101172 0.003954 ECMLI 0.71536 -4.89150 3.09480 1600000 363375 0.003302 ECMGI 0.40174 -14.94634 -1.75223 1600000 80182 0.004989 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -7.027 -7.234 -0.050 -5.649 IL 1 1 2 1 4 1 24 85 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 5 1 24 82 102 -7.158 -0.037 -6.974 -7.186 -8.077 1.749 -2.522 -2.138 -2.079 D 4 2 3 5 5 0 18 80 101 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 22 82 103 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 C G - - MP 6 5 3 10 6 2 23 81 101 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.714 -4.634 -4.376 -0.852 -3.059 -4.766 3.599 -3.885 -4.431 -0.634 -4.674 -2.584 0.439 -4.772 -0.769 -3.265 ML 7 5 3 10 6 1 19 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 18 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 15 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 21 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 20 80 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 C G - - MP 12 11 6 16 4 2 21 79 99 -7.027 -7.234 -0.050 -5.649 -4.714 -4.634 -4.376 -0.852 -3.059 -4.766 3.599 -3.885 -4.431 -0.634 -4.674 -2.584 0.439 -4.772 -0.769 -3.265 ML 13 11 6 16 4 1 18 79 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 4 1 16 78 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 15 11 6 16 4 0 15 77 98 -4.568 -4.250 -2.265 -0.520 IL 16 16 5 16 4 1 20 80 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 17 17 6 17 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 18 17 6 20 3 1 20 77 97 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 19 17 6 20 3 0 14 75 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 19 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 21 20 3 23 3 1 19 76 96 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 22 20 3 23 3 0 13 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 24 23 3 26 3 1 18 74 95 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 25 23 3 26 3 0 13 73 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 27 26 3 29 3 1 18 73 94 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 28 26 3 29 3 0 12 72 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 30 29 3 32 3 1 17 72 93 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 31 29 3 32 3 0 11 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 33 32 3 35 3 1 16 71 92 -8.038 -0.020 -6.692 0.158 -0.818 -0.225 0.548 D 34 32 3 35 3 0 11 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 36 35 3 38 3 1 16 70 90 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 37 35 3 38 3 0 10 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 39 38 3 41 3 1 15 69 89 -8.038 -0.020 -6.692 1.078 -1.105 -1.178 -0.026 D 40 38 3 41 3 0 9 68 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 14 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 42 41 3 44 3 1 14 68 88 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 43 41 3 44 3 0 9 67 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 45 44 3 47 3 1 14 67 87 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 46 44 3 47 3 0 8 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 48 47 3 50 3 1 13 66 86 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 49 47 3 50 3 0 7 65 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 51 50 3 53 3 1 12 65 85 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 52 50 3 53 3 0 7 64 84 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 54 53 3 56 3 1 12 64 84 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 55 53 3 56 3 0 6 63 83 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 11 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 57 56 3 59 3 1 11 63 83 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 58 56 3 59 3 0 5 62 82 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 60 59 3 62 3 1 11 62 82 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 61 59 3 62 3 0 5 61 81 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 63 62 3 65 3 1 10 61 81 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 64 62 3 65 3 0 4 59 80 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 66 65 3 68 3 1 9 60 80 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 67 65 3 68 3 0 4 58 78 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 8 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 69 68 3 71 3 1 9 59 79 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 70 68 3 71 3 0 3 57 77 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 72 71 3 74 3 1 8 58 78 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 73 71 3 74 3 0 3 56 76 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - g - - - ML 75 74 3 77 3 1 7 57 77 -8.038 -0.020 -6.692 -0.495 -0.506 0.966 -0.660 D 76 74 3 77 3 0 2 55 75 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 6 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 78 77 3 80 3 1 6 56 76 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 79 77 3 80 3 0 2 54 74 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 81 80 3 83 3 1 5 55 74 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 82 80 3 83 3 0 1 53 73 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 84 83 3 86 3 1 4 54 73 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 85 83 3 86 3 0 1 52 72 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 87 86 3 89 3 1 3 53 72 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 88 86 3 89 3 0 0 51 71 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 90 89 3 92 3 1 2 52 71 -8.038 -0.020 -6.692 1.060 -1.091 -1.170 0.001 D 91 89 3 92 3 0 0 50 70 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 93 92 3 95 3 1 1 50 70 -8.038 -0.473 -1.860 1.162 -1.511 -0.154 -0.963 D 94 92 3 95 3 0 0 49 69 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 3 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 96 95 3 98 3 1 3 50 69 -7.592 -0.027 -6.246 -0.837 -0.957 -1.526 1.366 D 97 95 3 98 3 0 0 48 68 -8.017 -1.185 -0.846 IL 98 98 3 98 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 99 98 3 101 3 1 3 49 68 -7.828 -0.023 -6.482 -1.416 1.523 -2.226 -0.896 D 100 98 3 101 3 0 0 47 67 -7.389 -0.509 -1.780 IL 101 101 3 101 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 102 101 3 104 3 1 2 48 67 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 103 101 3 104 3 0 0 46 66 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 105 104 3 107 3 1 2 46 66 -8.038 -0.020 -6.692 0.110 -1.699 1.104 -1.110 D 106 104 3 107 3 0 0 45 65 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 108 107 3 110 3 1 1 45 65 -8.038 -0.240 -2.741 -1.738 -2.982 1.757 -2.370 D 109 107 3 110 3 0 0 44 64 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 111 110 3 113 3 1 1 45 64 -7.821 -0.023 -6.475 -1.274 -2.443 1.642 -1.828 D 112 110 3 113 3 0 0 42 62 -7.414 -2.927 -0.213 IL 113 113 3 113 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 114 113 3 116 3 1 1 43 63 -7.821 -0.023 -6.475 -1.226 -1.269 -1.944 1.535 D 115 113 3 116 3 0 0 41 61 -7.414 -2.927 -0.213 IL 116 116 3 116 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - - - ML 117 116 3 119 3 1 1 42 62 -7.821 -0.023 -6.475 -1.399 1.517 -2.209 -0.883 D 118 116 3 119 3 0 0 41 60 -7.414 -2.927 -0.213 IL 119 119 3 119 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 120 119 3 122 3 1 1 41 61 -7.821 -0.023 -6.475 -1.274 -2.443 1.642 -1.828 D 121 119 3 122 3 0 0 40 60 -7.414 -0.498 -1.806 IL 122 122 3 122 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 123 122 3 125 3 1 1 40 60 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 124 122 3 125 3 0 0 39 58 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 126 125 3 128 3 1 1 39 58 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 127 125 3 128 3 0 0 38 57 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 129 128 3 131 3 1 1 38 57 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 130 128 3 131 3 0 0 37 56 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 132 131 3 134 3 1 1 37 56 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 133 131 3 134 3 0 0 36 55 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 135 134 3 137 3 1 1 36 55 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 136 134 3 137 3 0 0 35 54 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 138 137 3 140 3 1 1 35 54 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 139 137 3 140 3 0 0 34 53 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 141 140 3 143 3 1 1 34 53 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 142 140 3 143 3 0 0 33 52 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - c - - - ML 144 143 3 146 3 1 1 33 52 -8.038 -0.020 -6.692 -0.351 0.318 -0.403 0.279 D 145 143 3 146 3 0 0 31 51 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - G - - - ML 147 146 3 149 3 1 1 32 51 -8.038 -0.020 -6.692 0.110 -1.699 1.104 -1.110 D 148 146 3 149 3 0 0 30 50 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - U - - - ML 150 149 3 152 3 1 1 31 50 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 151 149 3 152 3 0 0 29 48 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - u - - - ML 153 152 3 155 3 1 1 29 48 -2.842 -0.233 -6.692 0.529 -0.877 -1.096 0.627 D 154 152 3 155 3 0 0 27 46 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 49 -1.855 -0.554 -4.555 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - u - - - ML 156 155 3 158 3 1 1 28 47 -8.038 -0.240 -2.741 0.568 -0.882 -1.090 0.590 D 157 155 3 158 3 0 0 27 46 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - a - - - ML 159 158 3 161 3 1 1 27 46 -7.821 -0.023 -6.475 0.942 -1.274 0.070 -0.699 D 160 158 3 161 3 0 0 25 44 -7.414 -2.927 -0.213 IL 161 161 3 161 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - a - - - ML 162 161 3 164 3 1 1 26 45 -7.821 -0.023 -6.475 0.343 -0.791 -0.050 0.248 D 163 161 3 164 3 0 0 25 44 -7.414 -0.498 -1.806 IL 164 164 3 164 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - U - - - ML 165 164 3 167 3 1 1 25 43 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 166 164 3 167 3 0 0 24 43 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - C - - - ML 168 167 3 170 3 1 1 23 42 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 169 167 3 170 3 0 0 22 41 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - C - - - ML 171 170 3 173 3 1 1 22 41 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 172 170 3 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - C - - - ML 174 173 3 176 3 1 1 21 40 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - C - - - ML 177 176 3 179 3 1 1 20 39 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - A - - - ML 180 179 3 182 3 1 1 19 37 -8.038 -0.020 -6.692 1.749 -2.522 -2.138 -2.079 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - C - - - ML 183 182 3 185 3 1 1 17 36 -8.038 -0.020 -6.692 -0.934 1.026 -1.752 0.193 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - C - - - ML 186 185 3 188 3 1 1 16 35 -8.038 -0.020 -6.692 -1.922 1.670 -2.751 -1.299 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - U - - - ML 189 188 3 191 3 1 1 15 33 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - G - - - ML 192 191 3 194 3 1 1 13 31 -8.038 -0.020 -6.692 -1.738 -2.982 1.757 -2.370 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.749 -2.522 -2.138 -2.079 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR55 ACC RF01307 DESC Small nucleolar RNA sR55 LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 17:10:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01307/CM NSEQ 4 EFFN 2.199219 CKSUM 1033221460 STATS LOCAL MSV -8.3970 0.71883 STATS LOCAL VITERBI -9.2487 0.71883 STATS LOCAL FORWARD -3.8277 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38698 1.44675 1.31584 1.40003 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 0.00000 * 1 0.16715 3.16956 2.90051 2.86628 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 2 3.13201 0.25743 2.89440 2.05573 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 3 3.13026 0.25763 2.89359 2.05543 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 4 2.62818 3.49592 0.16121 3.07141 4 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 5 0.16715 3.16956 2.90051 2.86628 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 6 2.54482 2.51993 3.05948 0.23050 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 7 2.62818 3.49592 0.16121 3.07141 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 8 0.16715 3.16956 2.90051 2.86628 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 9 1.27753 1.96025 1.54101 1.00433 9 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 10 2.62818 3.49592 0.16121 3.07141 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 11 0.63334 2.16261 2.21480 1.40657 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 12 2.62818 3.49592 0.16121 3.07141 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 13 2.54482 2.51993 3.05948 0.23050 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 14 2.62818 3.49592 0.16121 3.07141 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 15 2.54482 2.51993 3.05948 0.23050 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 16 2.76174 0.21925 3.33678 2.32128 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 17 0.16715 3.16956 2.90051 2.86628 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 18 2.54482 2.51993 3.05948 0.23050 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 19 2.76174 0.21925 3.33678 2.32128 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 20 2.76174 0.21925 3.33678 2.32128 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 21 2.76174 0.21925 3.33678 2.32128 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 22 2.54482 2.51993 3.05948 0.23050 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 23 1.74413 1.73927 0.70539 1.86021 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 24 2.76174 0.21925 3.33678 2.32128 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 25 2.54482 2.51993 3.05948 0.23050 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 26 2.62818 3.49592 0.16121 3.07141 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 27 0.16715 3.16956 2.90051 2.86628 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 28 0.64558 2.15293 2.20859 1.38773 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 29 0.57477 2.45062 1.49182 2.07176 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.38818 3.93839 1.19657 1.46634 0.26236 1.09861 0.40547 30 1.98614 2.06490 2.46552 0.42928 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05585 3.60606 3.60606 1.46634 0.26236 0.77026 0.62156 31 2.40283 0.31819 2.96644 2.03568 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04660 3.78256 3.78256 1.46634 0.26236 0.21340 1.64938 32 2.62818 3.49592 0.16121 3.07141 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 33 1.31323 2.58294 0.61257 2.17560 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 34 2.62818 3.49592 0.16121 3.07141 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.21063 3.93839 1.76934 1.46634 0.26236 1.09861 0.40547 35 2.30121 3.11719 0.23854 2.69110 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 2.37490 0.09764 36 2.26247 2.28747 2.76234 0.31301 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 2.37490 0.09764 37 2.39103 0.32224 2.95408 2.02634 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 2.37490 0.09764 38 2.30121 3.11719 0.23854 2.69110 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 0.20585 1.68175 39 0.16715 3.16956 2.90051 2.86628 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 40 2.54482 2.51993 3.05948 0.23050 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 41 2.62818 3.49592 0.16121 3.07141 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 42 0.16715 3.16956 2.90051 2.86628 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 43 2.54482 2.51993 3.05948 0.23050 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 44 2.62818 3.49592 0.16121 3.07141 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 45 0.16715 3.16956 2.90051 2.86628 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 46 1.63737 1.16024 1.66484 1.19443 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 47 1.31323 2.58294 0.61257 2.17560 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 48 2.54482 2.51993 3.05948 0.23050 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 49 1.01671 2.00292 2.15481 0.94842 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20243 1.80926 3.93839 0.22296 1.61019 1.09861 0.40547 50 0.98983 2.00636 2.15121 0.97408 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.21063 3.93839 1.76934 1.46634 0.26236 1.09861 0.40547 51 0.72825 2.28189 1.33519 1.88356 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 2.37490 0.09764 52 1.14828 1.93976 1.41863 1.21391 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04697 3.77474 3.77474 1.46634 0.26236 0.20585 1.68175 53 2.54482 2.51993 3.05948 0.23050 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 54 2.76174 0.21925 3.33678 2.32129 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 55 2.76174 0.21925 3.33678 2.32129 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 56 2.76174 0.21925 3.33678 2.32128 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 57 2.76174 0.21925 3.33678 2.32129 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 58 0.16715 3.16956 2.90051 2.86628 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 59 2.05213 0.66559 2.62148 1.25572 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 60 2.76174 0.21925 3.33678 2.32128 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 61 2.54482 2.51993 3.05948 0.23050 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 62 2.62818 3.49592 0.16121 3.07141 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 63 0.16715 3.16956 2.90051 2.86628 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 64 2.33181 3.05930 0.22307 2.88422 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.03974 3.93839 3.93839 1.46634 0.26236 1.09861 0.40547 65 2.33121 3.05850 0.22326 2.88323 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 3.91872 * 1.46634 0.26236 0.00000 * //