INFERNAL1/a [1.1.4 | Dec 2020] NAME sR55 ACC RF01307 DESC Small nucleolar RNA sR55 STATES 196 NODES 64 CLEN 64 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:12:21 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.152344 CKSUM 1033221460 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 44.50 NC 33.70 EFP7GF -8.9125 0.71888 ECMLC 0.79600 -5.73171 1.82577 1600000 491806 0.002440 ECMGC 0.38143 -19.92302 -5.31918 1600000 105007 0.003809 ECMLI 0.71441 -4.90913 3.10187 1600000 367031 0.003269 ECMGI 0.42421 -14.23831 -1.69803 1600000 81726 0.004894 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 102 -7.036 -7.243 -0.050 -5.658 IL 1 1 2 1 4 1 23 85 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 5 1 23 82 102 -7.166 -0.037 -6.981 -7.193 -8.085 1.753 -2.539 -2.154 -2.098 D 4 2 3 5 5 0 17 80 101 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 21 82 102 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 C G - - MP 6 5 3 10 6 2 23 81 101 -9.142 -9.081 -0.021 -7.858 -8.137 -8.533 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 7 5 3 10 6 1 19 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 17 79 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 15 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 20 80 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 20 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 C G - - MP 12 11 6 16 4 2 21 79 99 -7.036 -7.243 -0.050 -5.658 -4.732 -4.654 -4.391 -0.870 -3.070 -4.779 3.604 -3.898 -4.447 -0.655 -4.688 -2.604 0.425 -4.789 -0.781 -3.281 ML 13 11 6 16 4 1 18 79 99 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 4 1 16 78 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 15 11 6 16 4 0 14 77 98 -4.568 -4.250 -2.265 -0.520 IL 16 16 5 16 4 1 19 80 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 17 17 6 17 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 18 17 6 20 3 1 19 76 97 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 19 17 6 20 3 0 14 75 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 21 20 3 23 3 1 19 75 95 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 22 20 3 23 3 0 13 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 24 23 3 26 3 1 18 74 94 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 25 23 3 26 3 0 12 73 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 27 26 3 29 3 1 17 73 93 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 28 26 3 29 3 0 11 72 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 30 29 3 32 3 1 17 72 92 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 31 29 3 32 3 0 11 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 33 32 3 35 3 1 16 71 91 -8.047 -0.019 -6.701 0.148 -0.821 -0.229 0.558 D 34 32 3 35 3 0 10 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 36 35 3 38 3 1 15 70 90 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 37 35 3 38 3 0 9 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 39 38 3 41 3 1 15 69 89 -8.047 -0.019 -6.701 1.067 -1.099 -1.177 -0.005 D 40 38 3 41 3 0 9 68 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 42 41 3 44 3 1 14 68 88 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 43 41 3 44 3 0 8 66 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 45 44 3 47 3 1 13 67 87 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 46 44 3 47 3 0 7 65 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 48 47 3 50 3 1 13 66 86 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 49 47 3 50 3 0 7 64 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 51 50 3 53 3 1 12 65 85 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 52 50 3 53 3 0 6 63 84 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 54 53 3 56 3 1 11 64 84 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 55 53 3 56 3 0 6 62 82 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 57 56 3 59 3 1 11 63 83 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 58 56 3 59 3 0 5 61 81 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 60 59 3 62 3 1 10 62 82 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 61 59 3 62 3 0 4 60 80 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 63 62 3 65 3 1 9 61 81 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 64 62 3 65 3 0 4 59 79 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 66 65 3 68 3 1 9 60 80 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 67 65 3 68 3 0 3 58 78 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 69 68 3 71 3 1 8 59 78 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 70 68 3 71 3 0 3 57 77 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 72 71 3 74 3 1 8 58 77 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 73 71 3 74 3 0 2 56 76 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - g - - - ML 75 74 3 77 3 1 7 57 76 -8.047 -0.019 -6.701 -0.504 -0.511 0.974 -0.670 D 76 74 3 77 3 0 2 55 75 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 6 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 78 77 3 80 3 1 6 55 75 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 79 77 3 80 3 0 1 54 74 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 81 80 3 83 3 1 5 54 74 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 82 80 3 83 3 0 1 53 73 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 84 83 3 86 3 1 4 53 73 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 85 83 3 86 3 0 0 52 72 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 87 86 3 89 3 1 3 52 72 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 88 86 3 89 3 0 0 51 71 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 90 89 3 92 3 1 2 51 71 -8.047 -0.019 -6.701 1.066 -1.098 -1.176 -0.004 D 91 89 3 92 3 0 0 50 69 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 93 92 3 95 3 1 1 50 70 -1.880 -0.788 -2.743 1.167 -1.520 -0.157 -0.973 D 94 92 3 95 3 0 0 48 68 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 3 50 70 -2.172 -0.427 -4.872 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 96 95 3 98 3 1 3 49 68 -7.830 -0.023 -6.484 -1.419 1.525 -2.230 -0.900 D 97 95 3 98 3 0 0 47 67 -7.418 -0.496 -1.810 IL 98 98 3 98 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 99 98 3 101 3 1 2 48 67 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 100 98 3 101 3 0 0 46 66 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 102 101 3 104 3 1 2 46 66 -8.047 -0.019 -6.701 0.104 -1.710 1.111 -1.122 D 103 101 3 104 3 0 0 45 65 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 105 104 3 107 3 1 1 45 65 -8.047 -0.240 -2.740 -1.756 -3.003 1.761 -2.390 D 106 104 3 107 3 0 0 44 64 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - G - - - ML 108 107 3 110 3 1 1 44 64 -7.829 -0.023 -6.483 -1.291 -2.464 1.647 -1.849 D 109 107 3 110 3 0 0 42 62 -7.420 -2.933 -0.212 IL 110 110 3 110 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 111 110 3 113 3 1 1 43 63 -7.829 -0.023 -6.483 -1.240 -1.281 -1.960 1.540 D 112 110 3 113 3 0 0 41 61 -7.420 -2.933 -0.212 IL 113 113 3 113 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 114 113 3 116 3 1 1 42 62 -7.829 -0.023 -6.483 -1.418 1.524 -2.229 -0.899 D 115 113 3 116 3 0 0 41 60 -7.420 -2.933 -0.212 IL 116 116 3 116 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 117 116 3 119 3 1 1 41 61 -7.829 -0.023 -6.483 -1.291 -2.464 1.647 -1.849 D 118 116 3 119 3 0 0 40 60 -7.420 -0.496 -1.811 IL 119 119 3 119 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 120 119 3 122 3 1 1 40 60 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 121 119 3 122 3 0 0 39 58 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 123 122 3 125 3 1 1 39 58 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 124 122 3 125 3 0 0 38 57 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 126 125 3 128 3 1 1 38 57 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 127 125 3 128 3 0 0 37 56 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - - - ML 129 128 3 131 3 1 1 37 56 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 130 128 3 131 3 0 0 36 55 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - U - - - ML 132 131 3 134 3 1 1 36 55 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 133 131 3 134 3 0 0 35 54 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 135 134 3 137 3 1 1 35 54 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 136 134 3 137 3 0 0 34 53 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 138 137 3 140 3 1 1 34 53 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 139 137 3 140 3 0 0 33 52 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - c - - - ML 141 140 3 143 3 1 1 33 52 -8.047 -0.019 -6.701 -0.356 0.319 -0.416 0.289 D 142 140 3 143 3 0 0 31 51 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 144 143 3 146 3 1 1 32 51 -8.047 -0.019 -6.701 0.104 -1.710 1.111 -1.122 D 145 143 3 146 3 0 0 30 50 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 147 146 3 149 3 1 1 31 50 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 148 146 3 149 3 0 0 29 48 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - u - - - ML 150 149 3 152 3 1 1 29 48 -2.801 -0.240 -6.701 0.520 -0.880 -1.102 0.639 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 30 49 -1.868 -0.548 -4.568 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - u - - - ML 153 152 3 155 3 1 1 28 47 -8.047 -0.240 -2.740 0.565 -0.886 -1.095 0.595 D 154 152 3 155 3 0 0 27 46 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - a - - - ML 156 155 3 158 3 1 1 27 46 -7.829 -0.023 -6.483 0.931 -1.279 0.093 -0.703 D 157 155 3 158 3 0 0 25 44 -7.420 -2.933 -0.212 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - a - - - ML 159 158 3 161 3 1 1 26 45 -7.829 -0.023 -6.483 0.354 -0.793 -0.062 0.247 D 160 158 3 161 3 0 0 25 44 -7.420 -0.496 -1.811 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 162 161 3 164 3 1 1 25 43 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 163 161 3 164 3 0 0 24 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - C - - - ML 165 164 3 167 3 1 1 23 42 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 166 164 3 167 3 0 0 22 41 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - C - - - ML 168 167 3 170 3 1 1 22 41 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - C - - - ML 171 170 3 173 3 1 1 21 40 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - C - - - ML 174 173 3 176 3 1 1 20 39 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - - - ML 177 176 3 179 3 1 1 19 37 -8.047 -0.019 -6.701 1.753 -2.539 -2.154 -2.098 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - C - - - ML 180 179 3 182 3 1 1 17 36 -8.047 -0.019 -6.701 -0.934 1.017 -1.752 0.210 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - C - - - ML 183 182 3 185 3 1 1 16 35 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - U - - - ML 186 185 3 188 3 1 1 15 33 -8.047 -0.019 -6.701 -1.640 -1.609 -2.381 1.660 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - G - - - ML 189 188 3 191 3 1 1 13 31 -8.047 -0.019 -6.701 -1.756 -3.003 1.761 -2.390 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - A - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 1.753 -2.539 -2.154 -2.098 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME sR55 ACC RF01307 DESC Small nucleolar RNA sR55 LENG 64 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:12:21 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 4 EFFN 2.222656 CKSUM 1033221460 STATS LOCAL MSV -8.2819 0.71888 STATS LOCAL VITERBI -9.2010 0.71888 STATS LOCAL FORWARD -3.8878 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38380 1.44165 1.30794 1.41691 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 0.00000 * 1 0.16503 3.18125 2.91104 2.87916 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 2 3.14398 0.25434 2.90776 2.06466 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 3 3.14213 0.25455 2.90690 2.06434 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 4 2.64033 3.50980 0.15894 3.08531 4 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 5 0.16503 3.18125 2.91104 2.87916 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 6 2.55571 2.52895 3.07083 0.22786 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 7 2.64033 3.50980 0.15894 3.08531 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 8 0.16503 3.18125 2.91104 2.87916 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 9 1.28410 1.96224 1.54397 0.99689 9 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 10 2.64033 3.50980 0.15894 3.08531 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 11 0.64110 2.15838 2.21368 1.39239 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 12 2.64033 3.50980 0.15894 3.08531 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 13 2.55571 2.52895 3.07083 0.22786 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 14 2.64033 3.50980 0.15894 3.08531 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 15 2.55571 2.52895 3.07083 0.22786 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 16 2.77592 0.21614 3.35117 2.33263 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 17 0.16503 3.18125 2.91104 2.87916 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 18 2.55571 2.52895 3.07083 0.22786 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 19 2.77592 0.21614 3.35117 2.33263 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 20 2.77592 0.21614 3.35117 2.33263 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 21 2.77592 0.21614 3.35117 2.33263 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 22 2.55571 2.52895 3.07083 0.22786 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 23 1.74984 1.74291 0.69987 1.86732 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 24 2.77592 0.21614 3.35117 2.33263 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 25 2.55571 2.52895 3.07083 0.22786 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 26 2.64033 3.50980 0.15894 3.08531 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 27 0.16503 3.18125 2.91104 2.87916 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 28 0.64194 2.15772 2.21326 1.39111 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 29 0.57133 2.45689 1.49420 2.07865 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.64394 1.18453 1.77850 0.12229 2.16188 1.09861 0.40547 30 2.40516 0.31740 2.96888 2.03752 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04667 3.78102 3.78102 1.46634 0.26236 0.20671 1.67801 31 2.64033 3.50980 0.15894 3.08531 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 32 1.31696 2.59070 0.60795 2.18377 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 33 2.64033 3.50980 0.15894 3.08531 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.20899 3.94295 1.77664 1.46634 0.26236 1.09861 0.40547 34 2.31330 3.13137 0.23501 2.70534 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 2.37267 0.09787 35 2.27259 2.29574 2.77308 0.30952 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 2.37267 0.09787 36 2.40434 0.31768 2.96802 2.03687 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 2.37267 0.09787 37 2.31330 3.13137 0.23501 2.70534 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 0.20636 1.67952 38 0.16503 3.18125 2.91104 2.87916 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 39 2.55571 2.52895 3.07083 0.22786 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 40 2.64033 3.50980 0.15894 3.08531 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 41 0.16503 3.18125 2.91104 2.87916 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 42 2.55571 2.52895 3.07083 0.22786 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 43 2.64033 3.50980 0.15894 3.08531 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 44 0.16503 3.18125 2.91104 2.87916 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 45 1.64095 1.15962 1.67397 1.18712 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 46 1.31696 2.59070 0.60795 2.18377 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 47 2.55571 2.52895 3.07083 0.22786 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 48 1.02357 2.00500 2.15905 0.94008 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20860 1.77850 3.94295 0.21566 1.63995 1.09861 0.40547 49 0.99154 2.00886 2.15453 0.97050 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20899 3.94295 1.77664 1.46634 0.26236 1.09861 0.40547 50 0.73567 2.28496 1.31915 1.88600 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 2.37267 0.09787 51 1.14006 1.94144 1.42698 1.21513 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04669 3.78065 3.78065 1.46634 0.26236 0.20636 1.67952 52 2.55571 2.52895 3.07083 0.22786 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 53 2.77592 0.21614 3.35117 2.33263 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 54 2.77592 0.21614 3.35117 2.33263 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 55 2.77592 0.21614 3.35117 2.33263 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 56 2.77592 0.21614 3.35117 2.33263 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 57 0.16503 3.18125 2.91104 2.87916 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 58 2.05171 0.67226 2.62130 1.24402 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 59 2.77592 0.21614 3.35117 2.33263 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 60 2.55571 2.52895 3.07083 0.22786 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 61 2.64033 3.50980 0.15894 3.08531 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 62 0.16503 3.18125 2.91104 2.87916 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 63 2.34086 3.07261 0.22037 2.89613 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.03955 3.94295 3.94295 1.46634 0.26236 1.09861 0.40547 64 2.34028 3.07184 0.22055 2.89518 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.01997 3.92336 * 1.46634 0.26236 0.00000 * //