INFERNAL1/a [1.1.5 | Sep 2023] NAME sR52 ACC RF01306 DESC Small nucleolar RNA sR52 STATES 184 NODES 58 CLEN 60 W 76 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:20:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01306/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.949219 CKSUM 2172736931 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 87.50 NC 45.90 EFP7GF -5.3425 0.72764 ECMLC 0.54333 -12.76450 -0.10137 1600000 1167453 0.001028 ECMGC 0.37203 -22.96939 -5.96674 1600000 223448 0.001790 ECMLI 0.56755 -10.10375 1.05296 1600000 674732 0.001778 ECMGI 0.40411 -17.46443 -2.64507 1600000 159551 0.002507 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -6.956 -7.163 -0.053 -5.577 IL 1 1 2 1 4 1 21 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 21 76 96 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 4 2 3 5 3 0 15 74 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 20 75 95 -7.972 -0.020 -6.626 0.709 -1.403 0.505 -0.815 D 7 5 3 8 3 0 15 73 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 19 74 94 -7.972 -0.020 -6.626 0.709 -1.403 0.505 -0.815 D 10 8 3 11 3 0 14 72 93 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 19 73 93 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 13 11 3 14 3 0 13 71 91 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 18 72 92 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 16 14 3 17 3 0 12 70 90 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 17 71 91 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 19 17 3 20 3 0 12 69 89 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 16 70 90 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 22 20 3 23 3 0 11 68 88 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 15 69 89 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 25 23 3 26 3 0 10 67 87 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 15 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 15 68 87 -7.972 -0.020 -6.626 -1.500 -1.494 -2.234 1.622 D 28 26 3 29 3 0 10 66 86 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 14 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 14 67 86 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 31 29 3 32 3 0 9 65 85 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 13 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 13 65 85 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 34 32 3 35 3 0 8 64 84 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 12 64 84 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 37 35 3 38 3 0 8 63 83 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - a - - - ML 39 38 3 41 3 1 11 63 83 -7.972 -0.020 -6.626 0.709 -1.403 0.505 -0.815 D 40 38 3 41 3 0 7 62 82 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 11 62 82 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 43 41 3 44 3 0 6 61 81 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 10 61 81 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 46 44 3 47 3 0 6 60 80 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - a - - - ML 48 47 3 50 3 1 9 60 80 -7.972 -0.020 -6.626 0.709 -1.403 0.505 -0.815 D 49 47 3 50 3 0 5 59 79 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 8 59 79 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 52 50 3 53 3 0 5 58 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 7 58 78 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 55 53 3 56 3 0 4 57 77 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 57 56 3 59 3 1 6 57 77 -7.972 -0.454 -1.912 -1.597 -2.820 1.727 -2.206 D 58 56 3 59 3 0 3 56 76 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 7 56 76 -7.546 -0.028 -6.200 -0.762 -0.898 -1.444 1.326 D 61 59 3 62 3 0 3 54 74 -7.930 -3.443 -0.146 IL 62 62 3 62 3 1 7 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 7 55 75 -7.546 -0.028 -6.200 -0.762 -0.898 -1.444 1.326 D 64 62 3 65 3 0 3 54 74 -7.930 -0.330 -2.321 IL 65 65 3 65 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - a - - - ML 66 65 3 68 3 1 6 54 74 -7.972 -0.020 -6.626 0.625 0.260 -1.116 -0.323 D 67 65 3 68 3 0 0 53 72 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 5 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 6 53 73 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 70 68 3 71 3 0 0 52 71 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 5 52 71 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 73 71 3 74 3 0 0 51 70 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 4 51 70 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 76 74 3 77 3 0 0 50 69 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 4 50 69 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 79 77 3 80 3 0 0 48 68 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 3 49 68 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 82 80 3 83 3 0 0 47 67 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 3 48 67 -7.972 -0.020 -6.626 -1.760 1.629 -2.584 -1.170 D 85 83 3 86 3 0 0 46 66 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 3 47 66 -7.972 -0.020 -6.626 -1.500 -1.494 -2.234 1.622 D 88 86 3 89 3 0 0 45 65 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 2 46 65 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 91 89 3 92 3 0 0 44 64 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 2 44 64 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 94 92 3 95 3 0 0 43 63 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 1 43 63 -7.972 -0.454 -1.912 1.722 -2.387 -2.017 -1.931 D 97 95 3 98 3 0 0 42 62 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 1 43 62 -7.546 -0.028 -6.200 -0.762 -0.898 -1.444 1.326 D 100 98 3 101 3 0 0 41 60 -7.930 -0.330 -2.321 IL 101 101 3 101 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 1 41 60 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 103 101 3 104 3 0 0 40 59 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 40 59 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 106 104 3 107 3 0 0 39 58 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - a - - - ML 108 107 3 110 3 1 1 39 58 -7.972 -0.020 -6.626 0.709 -1.403 0.505 -0.815 D 109 107 3 110 3 0 0 38 57 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 1 38 57 -7.972 -0.020 -6.626 -1.500 -1.494 -2.234 1.622 D 112 110 3 113 3 0 0 37 56 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 114 113 3 116 3 1 1 37 56 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 115 113 3 116 3 0 0 36 55 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 1 36 55 -7.972 -0.020 -6.626 1.722 -2.387 -2.017 -1.931 D 118 116 3 119 3 0 0 35 54 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 1 35 54 -7.972 -0.020 -6.626 -1.500 -1.494 -2.234 1.622 D 121 119 3 122 3 0 0 34 53 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 123 122 3 125 3 1 1 34 52 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 124 122 3 125 3 0 0 33 51 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 1 33 51 -8.362 -0.019 -6.679 1.722 -2.387 -2.017 -1.931 D 127 125 3 128 3 0 0 31 50 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 60 - G - - MR 129 128 3 131 3 1 1 32 50 -8.362 -0.019 -6.679 -1.597 -2.820 1.727 -2.206 D 130 128 3 131 3 0 0 30 49 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 59 - U - - MR 132 131 3 134 3 1 1 31 49 -8.362 -0.019 -6.679 -1.500 -1.494 -2.234 1.622 D 133 131 3 134 3 0 0 29 48 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 58 - A - - MR 135 134 3 137 3 1 1 30 48 -8.362 -0.019 -6.679 1.722 -2.387 -2.017 -1.931 D 136 134 3 137 3 0 0 28 47 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 57 - G - - MR 138 137 3 140 3 1 1 29 47 -8.362 -0.019 -6.679 -1.597 -2.820 1.727 -2.206 D 139 137 3 140 3 0 0 27 46 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 56 - U - - MR 141 140 3 143 3 1 1 28 46 -8.362 -0.019 -6.679 -1.500 -1.494 -2.234 1.622 D 142 140 3 143 3 0 0 26 45 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 55 - C - - MR 144 143 3 146 3 1 1 26 45 -8.362 -0.019 -6.679 -1.760 1.629 -2.584 -1.170 D 145 143 3 146 3 0 0 25 44 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 54 - u - - MR 147 146 3 149 5 1 1 25 44 -7.100 -0.039 -6.915 -7.128 -8.019 -0.372 -0.945 0.339 0.529 D 148 146 3 149 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 43 53 G C - - MP 150 149 3 154 6 2 2 24 43 -9.111 -9.050 -0.021 -7.826 -8.106 -8.501 -4.761 -3.103 -4.861 0.188 -5.259 -4.701 -0.619 -5.105 -4.340 3.643 -4.676 -0.802 -1.004 -4.480 -2.657 -3.738 ML 151 149 3 154 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 44 52 A U - - MP 156 155 6 160 6 2 2 22 41 -9.111 -9.050 -0.021 -7.826 -8.106 -8.501 -3.809 -2.836 -3.827 3.343 -4.173 -5.237 0.128 -3.867 -3.717 1.059 -4.266 -0.309 -0.290 -4.422 -1.813 -2.659 ML 157 155 6 160 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 45 51 G C - - MP 162 161 6 166 6 2 2 20 39 -9.111 -9.050 -0.021 -7.826 -8.106 -8.501 -4.761 -3.103 -4.861 0.188 -5.259 -4.701 -0.619 -5.105 -4.340 3.643 -4.676 -0.802 -1.004 -4.480 -2.657 -3.738 ML 163 161 6 166 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 46 50 G C - - MP 168 167 6 172 4 2 2 18 37 -6.956 -7.163 -0.053 -5.577 -4.761 -3.103 -4.861 0.188 -5.259 -4.701 -0.619 -5.105 -4.340 3.643 -4.676 -0.802 -1.004 -4.480 -2.657 -3.738 ML 169 167 6 172 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 47 - G - - - ML 174 173 6 176 3 1 1 15 33 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 175 173 6 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 48 - G - - - ML 177 176 3 179 3 1 1 13 31 -7.972 -0.020 -6.626 -1.597 -2.820 1.727 -2.206 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 49 - A - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 1.722 -2.387 -2.017 -1.931 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR52 ACC RF01306 DESC Small nucleolar RNA sR52 LENG 60 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:20:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01306/CM NSEQ 2 EFFN 1.441406 CKSUM 2172736931 STATS LOCAL MSV -8.3841 0.72764 STATS LOCAL VITERBI -9.3871 0.72764 STATS LOCAL FORWARD -2.9378 0.72764 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.08677 1.92778 1.14024 1.62212 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.18806 2.98382 0.27477 2.55724 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.92544 2.23955 1.08943 1.82805 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.92544 2.23955 1.08943 1.82805 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.18806 2.98382 0.27477 2.55724 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.26513 2.75569 2.52814 2.41324 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.18806 2.98382 0.27477 2.55724 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.18806 2.98382 0.27477 2.55724 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.26513 2.75569 2.52814 2.41324 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.16864 2.21109 2.66233 0.34771 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.18806 2.98382 0.27477 2.55724 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.26513 2.75569 2.52814 2.41324 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.26513 2.75569 2.52814 2.41324 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.92544 2.23955 1.08943 1.82805 13 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.26513 2.75569 2.52814 2.41324 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.26513 2.75569 2.52814 2.41324 15 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.92544 2.23955 1.08943 1.82805 16 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.26513 2.75569 2.52814 2.41324 17 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.26513 2.75569 2.52814 2.41324 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.18806 2.98382 0.27477 2.55724 19 G - - : 1.38629 1.38629 1.38629 1.38629 0.33377 3.73767 1.34718 1.46634 0.26236 1.09861 0.40547 20 1.76710 1.89731 2.22494 0.56014 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.06437 3.46827 3.46827 1.46634 0.26236 2.55868 0.08057 21 1.76710 1.89731 2.22494 0.56014 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.06437 3.46827 3.46827 1.46634 0.26236 0.16820 1.86554 22 0.98438 1.25710 2.06885 1.53469 22 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.26513 2.75569 2.52814 2.41324 23 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.26513 2.75569 2.52814 2.41324 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.26513 2.75569 2.52814 2.41324 25 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.18806 2.98382 0.27477 2.55724 26 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.18806 2.98382 0.27477 2.55724 27 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.26795 0.36838 2.82457 1.92906 28 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.16864 2.21109 2.66233 0.34771 29 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.18806 2.98382 0.27477 2.55724 30 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.26513 2.75569 2.52814 2.41324 31 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.26513 2.75569 2.52814 2.41324 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.33918 3.73767 1.33242 1.46634 0.26236 1.09861 0.40547 33 1.76710 1.89731 2.22494 0.56014 33 U - - : 1.38629 1.38629 1.38629 1.38629 0.06471 3.46320 3.46320 1.46634 0.26236 0.16593 1.87803 34 0.26513 2.75569 2.52814 2.41324 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.18806 2.98382 0.27477 2.55724 35 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.92544 2.23955 1.08943 1.82805 36 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.16864 2.21109 2.66233 0.34771 37 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.18806 2.98382 0.27477 2.55724 38 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.26513 2.75569 2.52814 2.41324 39 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.16864 2.21109 2.66233 0.34771 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.18806 2.98382 0.27477 2.55724 41 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.26513 2.75569 2.52814 2.41324 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.27714 2.72244 0.27099 2.67239 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.59986 2.24131 1.45569 2.19326 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.28077 2.72568 0.26979 2.67724 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.28104 2.72592 0.26970 2.67759 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.18806 2.98382 0.27477 2.55724 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.18806 2.98382 0.27477 2.55724 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.26513 2.75569 2.52814 2.41324 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.90017 0.31399 2.55521 1.98936 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.90152 0.31379 2.55571 1.98962 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.42884 1.69746 2.05939 0.50886 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.90478 0.31329 2.55693 1.99026 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 1.57337 1.96546 1.20033 1.04564 54 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.26795 0.36838 2.82457 1.92906 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.16864 2.21109 2.66233 0.34771 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.18806 2.98382 0.27477 2.55724 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.26513 2.75569 2.52814 2.41324 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.16864 2.21109 2.66233 0.34771 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.18806 2.98382 0.27477 2.55724 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //