# STOCKHOLM 1.0
#=GF ID sR5
#=GF AC RF01304
#=GF DE Small nucleolar RNA sR5
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 40.0
#=GF NC 39.9
#=GF TC 40.3
#=GF SE Predicted; ClustalW; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 24.30 -Z 2958934 CM SEQDB
#=GF DR URL; http://lowelab.ucsc.edu/snoRNAdb/;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 10775111
#=GF RT Homologs of small nucleolar RNAs in Archaea.
#=GF RA Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP
#=GF RL Science. 2000;288:517-522.
#=GF WK Small_nucleolar_RNA
#=GF SQ 11

BA000001.2/257161-257109   GUGAUGAUGAACGCCAUC-GAUACUGAGAU-----AUGAUGACCGGAU--UCCUGGCUGAU
AF195099.1/1-54            GAAAUGAUGAAUGGUCGACGGAACGGACCU-----AUGAAGAAUUGUU--GCCGGACUGAC
AJ248288.1/160716-160768   UAGAUGAUGAGCGCCAUC-GAUGCUGAGGA-----GUGAUGACCGGAU--UCCUGGCUGAU
L77117.1/441357-441413     UCGAUGAUGAGCAAUAAA--AAGCUGACUUA--AUAUGAUGAACCUUUCGGGGUAUCUGAG
AP006878.1/2002514-2002457 AAGGUGAUGAGCACUCUC-GAACCUGACGGGCAGGAUGAUGAGCGGAU--UCCUGGCUGAU
X98420.1/4632-4581         UUAGUGAUGAUGCCCUUC--AAUUUGAUUG-----AUGAUAAGGGCCC--GUGUUACUGAA
BA000023.2/1287805-1287754 UGGAUGAUGAAGCCCUUA--AAUAUGAUCG-----GUGAUAAAGGCCC--GUGUUACUGAU
CP000077.1/1126136-1126187 UGGAUGAUGAGGCCCUUU--CAAUAGAUUG-----GUGAUAAAGGCCC--GUGUUUCUGAU
AE009950.1/272692-272638   UGAAUGAUGAGCGCCAUCCGAUACUGAGGGC----AUGAUGACCGGAU--UCCUGGCUGAU
AE006641.1/820975-820924   UUGGUGAUGACGCCCUUC--AGUUUGAUUG-----AUGAUAAGGGCCC--GUGUUACUGAA
AF254841.1/1-50            --GAUGAUGAGCGCCAUC-GAUGCUGAGGA-----GUGAUGACCGGAU--UCCUGGCUGA-
#=GC SS_cons               ::::::::::::::::::.:::::::::::.....::::::::<<<__..__>>>::::::
#=GC RF                    UaGAUGAUGAgcgCCaUc.GAAaCUGAuug.....AUGAUGAacGgaU..GccUgaCUGAu
//
