INFERNAL1/a [1.1.5 | Sep 2023] NAME sR49 ACC RF01303 DESC Small nucleolar RNA sR49 STATES 172 NODES 47 CLEN 56 W 73 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 16:41:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01303/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.241211 CKSUM 1333032268 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 79.70 NC 36.20 EFP7GF -8.9098 0.72056 ECMLC 0.65873 -6.22631 3.06238 1600000 545142 0.002201 ECMGC 0.46234 -16.86755 -3.72695 1600000 174014 0.002299 ECMLI 0.66198 -4.62694 4.23188 1600000 422696 0.002839 ECMGI 0.47585 -12.80253 -0.97788 1600000 111100 0.003600 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 93 -7.070 -7.277 -0.049 -5.691 IL 1 1 2 1 4 1 16 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 5 1 16 73 93 -7.193 -0.036 -7.009 -7.221 -8.113 -1.823 -3.079 1.773 -2.467 D 4 2 3 5 5 0 11 71 91 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 14 73 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 57 G C - - MP 6 5 3 10 6 2 15 72 92 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -4.969 -3.203 -5.092 0.047 -5.551 -4.781 -0.860 -5.349 -4.473 3.688 -4.794 -0.911 -1.239 -4.616 -2.909 -3.965 ML 7 5 3 10 6 1 12 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 10 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 8 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 13 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 13 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 56 C G - - MP 12 11 6 16 4 2 13 70 90 -7.070 -7.277 -0.049 -5.691 -4.801 -4.729 -4.448 -0.940 -3.113 -4.827 3.622 -3.948 -4.507 -0.732 -4.739 -2.680 0.375 -4.853 -0.826 -3.338 ML 13 11 6 16 4 1 11 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 4 1 9 69 90 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 15 11 6 16 4 0 7 68 89 -4.568 -4.250 -2.265 -0.520 IL 16 16 5 16 4 1 12 71 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 17 17 6 17 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 18 17 6 20 3 1 11 67 87 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 19 17 6 20 3 0 7 66 86 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 21 20 3 23 3 1 10 66 86 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 22 20 3 23 3 0 6 65 85 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 24 23 3 26 3 1 10 65 85 -8.462 -0.017 -6.779 -1.699 -1.659 -2.443 1.674 D 25 23 3 26 3 0 5 64 84 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 9 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - A - - MR 27 26 3 29 3 1 9 64 84 -8.462 -0.017 -6.779 1.764 -2.603 -2.212 -2.168 D 28 26 3 29 3 0 4 63 83 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - G - - MR 30 29 3 32 3 1 8 63 83 -8.462 -0.017 -6.779 -1.823 -3.079 1.773 -2.467 D 31 29 3 32 3 0 3 62 82 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - U - - MR 33 32 3 35 5 1 7 62 82 -7.193 -0.036 -7.009 -7.221 -8.113 -1.699 -1.659 -2.443 1.674 D 34 32 3 35 5 0 2 61 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 5 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 52 G C - - MP 36 35 3 40 4 2 6 61 81 -7.070 -7.277 -0.049 -5.691 -4.969 -3.203 -5.092 0.047 -5.551 -4.781 -0.860 -5.349 -4.473 3.688 -4.794 -0.911 -1.239 -4.616 -2.909 -3.965 ML 37 35 3 40 4 1 3 62 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 4 1 1 61 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 3 40 4 0 0 60 80 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 5 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - A - - - ML 42 41 6 44 3 1 5 59 79 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 43 41 6 44 3 0 0 58 77 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 4 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - A - - - ML 45 44 3 47 3 1 4 58 77 -8.462 -0.017 -6.779 1.015 -1.497 0.138 -0.931 D 46 44 3 47 3 0 0 57 76 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 51 - c - - MR 48 47 3 50 3 1 4 57 76 -8.462 -0.017 -6.779 -0.491 0.647 -0.081 -0.365 D 49 47 3 50 3 0 0 55 75 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - A - - MR 51 50 3 53 3 1 3 56 75 -8.462 -0.017 -6.779 1.764 -2.603 -2.212 -2.168 D 52 50 3 53 3 0 0 54 74 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 49 - A - - MR 54 53 3 56 5 1 3 55 74 -7.193 -0.036 -7.009 -7.221 -8.113 1.764 -2.603 -2.212 -2.168 D 55 53 3 56 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 48 g c - - MP 57 56 3 61 6 2 4 54 73 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -3.725 -2.527 -3.810 0.995 -4.540 -4.758 -0.073 -4.048 -3.662 2.702 -4.128 2.232 -0.346 -4.044 -2.024 -2.635 ML 58 56 3 61 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 47 a u - - MP 63 62 6 67 6 2 4 52 71 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 0.937 -2.259 -2.751 2.434 -2.850 -3.726 0.852 -3.001 -2.748 1.355 -3.298 -0.177 0.603 -2.981 -0.841 -1.825 ML 64 62 6 67 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 46 a u - - MP 69 68 6 73 6 2 3 50 69 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -3.459 -2.467 -3.571 2.748 -4.216 -4.928 0.023 -3.753 -3.428 1.473 -3.982 1.778 -0.220 -4.025 -1.861 -2.401 ML 70 68 6 73 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 45 C G - - MP 75 74 6 79 6 2 3 48 67 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -4.801 -4.729 -4.448 -0.940 -3.113 -4.827 3.622 -3.948 -4.507 -0.732 -4.739 -2.680 0.375 -4.853 -0.826 -3.338 ML 76 74 6 79 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 44 U G - - MP 81 80 6 85 4 2 2 46 65 -7.070 -7.277 -0.049 -5.691 -4.329 -4.259 -3.977 -0.571 -2.663 -4.362 1.629 -3.458 -4.020 -0.418 -4.287 -2.253 0.747 -4.391 3.144 -2.879 ML 82 80 6 85 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 46 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 45 65 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - G - - - ML 87 86 6 89 3 1 1 44 63 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 88 86 6 89 3 0 0 42 62 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - G - - - ML 90 89 3 92 3 1 1 42 62 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 91 89 3 92 3 0 0 41 61 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - A - - - ML 93 92 3 95 5 1 1 41 61 -7.193 -0.036 -7.009 -7.221 -8.113 1.764 -2.603 -2.212 -2.168 D 94 92 3 95 5 0 0 40 59 -4.959 -0.803 -4.221 -2.596 -2.508 IL 95 95 3 95 5 1 1 42 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 43 U A - - MP 96 95 3 100 6 2 2 40 60 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -4.463 -4.294 -4.271 -0.570 -3.156 -4.809 1.177 -3.870 -4.273 -0.354 -4.633 -2.184 3.444 -4.603 -0.826 -3.068 ML 97 95 3 100 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 42 C G - - MP 102 101 6 106 6 2 2 38 58 -9.155 -9.095 -0.020 -7.871 -8.151 -8.546 -4.801 -4.729 -4.448 -0.940 -3.113 -4.827 3.622 -3.948 -4.507 -0.732 -4.739 -2.680 0.375 -4.853 -0.826 -3.338 ML 103 101 6 106 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 41 C G - - MP 108 107 6 112 4 2 2 36 56 -7.070 -7.277 -0.049 -5.691 -4.801 -4.729 -4.448 -0.940 -3.113 -4.827 3.622 -3.948 -4.507 -0.732 -4.739 -2.680 0.375 -4.853 -0.826 -3.338 ML 109 107 6 112 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 36 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 35 55 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 38 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - - - ML 114 113 6 116 3 1 1 34 53 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 115 113 6 116 3 0 0 33 52 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 117 116 3 119 3 1 1 33 52 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 118 116 3 119 3 0 0 32 51 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - g - - - ML 120 119 3 122 3 1 1 32 51 -8.078 -0.019 -6.732 -0.503 -1.179 0.795 0.160 D 121 119 3 122 3 0 0 31 50 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - C - - - ML 123 122 3 125 3 1 1 31 50 -8.078 -0.019 -6.732 -2.021 1.692 -2.851 -1.378 D 124 122 3 125 3 0 0 29 49 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - U - - - ML 126 125 3 128 3 1 1 30 48 -8.078 -0.019 -6.732 -1.699 -1.659 -2.443 1.674 D 127 125 3 128 3 0 0 28 48 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - G - - - ML 129 128 3 131 3 1 1 28 47 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 130 128 3 131 3 0 0 27 46 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 132 131 3 134 3 1 1 27 46 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 133 131 3 134 3 0 0 26 45 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - u - - - ML 135 134 3 137 3 1 1 26 45 -2.355 -0.331 -6.732 -0.491 -0.947 -0.162 0.908 D 136 134 3 137 3 0 0 24 43 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 26 45 -2.009 -0.487 -4.709 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - c - - - ML 138 137 3 140 3 1 1 25 43 -8.078 -0.019 -6.732 -0.865 0.835 -1.676 0.438 D 139 137 3 140 3 0 0 24 43 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - U - - - ML 141 140 3 143 3 1 1 23 42 -8.078 -0.019 -6.732 -1.699 -1.659 -2.443 1.674 D 142 140 3 143 3 0 0 22 41 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 144 143 3 146 3 1 1 22 41 -8.078 -0.019 -6.732 -0.845 0.067 -1.610 1.048 D 145 143 3 146 3 0 0 21 40 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - A - - - ML 147 146 3 149 3 1 1 21 40 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 148 146 3 149 3 0 0 20 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - U - - - ML 150 149 3 152 3 1 1 20 39 -8.078 -0.019 -6.732 -1.699 -1.659 -2.443 1.674 D 151 149 3 152 3 0 0 19 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - G - - - ML 153 152 3 155 3 1 1 19 37 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - A - - - ML 156 155 3 158 3 1 1 17 36 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 159 158 3 161 3 1 1 16 35 -8.078 -0.019 -6.732 -1.699 -1.659 -2.443 1.674 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - G - - - ML 162 161 3 164 3 1 1 15 33 -8.078 -0.019 -6.732 -1.823 -3.079 1.773 -2.467 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - A - - - ML 165 164 3 167 3 1 1 13 31 -8.078 -0.019 -6.732 1.764 -2.603 -2.212 -2.168 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - a - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 0.317 -0.891 0.036 0.250 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR49 ACC RF01303 DESC Small nucleolar RNA sR49 LENG 56 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 16:41:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01303/CM NSEQ 3 EFFN 2.516602 CKSUM 1333032268 STATS LOCAL MSV -8.3413 0.72056 STATS LOCAL VITERBI -8.8210 0.72056 STATS LOCAL FORWARD -3.9382 0.72056 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30684 1.68971 1.13868 1.49383 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.78529 3.67455 0.13451 3.24975 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.64316 3.32960 0.15658 3.27024 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.28755 0.21992 3.06911 2.17499 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.78529 3.67455 0.13451 3.24975 4 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.14164 3.32236 3.03835 3.03483 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.68812 2.63885 3.20857 0.19829 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.63795 3.32319 0.15768 3.26138 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.14164 3.32236 3.03835 3.03483 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.66242 2.48673 1.27813 2.09837 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 1.96563 2.77101 0.32251 2.61718 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.65812 2.10569 1.52136 1.95191 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.77373 2.72506 0.92969 2.54478 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.28125 0.22055 3.06604 2.17387 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.01483 1.61746 2.81629 0.36714 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.78529 3.67455 0.13451 3.24975 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.78529 3.67455 0.13451 3.24975 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.14164 3.32236 3.03835 3.03483 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.06778 1.97385 2.82624 0.28061 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.28396 0.22028 3.06736 2.17435 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.28227 0.22045 3.06654 2.17405 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.78529 3.67455 0.13451 3.24975 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.14164 3.32236 3.03835 3.03483 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 1.77874 2.25143 0.80317 1.28015 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.94709 0.18219 3.52337 2.47028 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.68812 2.63885 3.20857 0.19829 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.78529 3.67455 0.13451 3.24975 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.14164 3.32236 3.03835 3.03483 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 1.76669 2.08276 1.49391 0.73392 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.27585 1.50580 3.95124 0.16518 1.88219 1.09861 0.40547 29 2.04709 0.77721 2.61711 1.08415 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.68812 2.63885 3.20857 0.19829 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.03075 1.33108 2.56582 0.63920 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.14164 3.32236 3.03835 3.03483 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.68812 2.63885 3.20857 0.19829 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.78529 3.67455 0.13451 3.24975 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.14164 3.32236 3.03835 3.03483 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.68812 2.63885 3.20857 0.19829 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.78529 3.67455 0.13451 3.24975 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.14164 3.32236 3.03835 3.03483 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 1.16550 2.02897 1.35043 1.21189 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.45056 3.23117 0.19078 3.03808 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.44954 3.22974 0.19105 3.03639 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.31977 3.00508 1.80984 2.80559 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.16929 2.99536 0.25853 2.75616 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.45305 3.23466 0.19011 3.04224 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.76295 1.74141 2.52451 0.38342 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 1.43237 1.75016 1.90842 0.82281 47 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 2.85044 0.86656 2.58148 0.80716 48 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 0.14164 3.32236 3.03835 3.03483 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 0.14164 3.32236 3.03835 3.03483 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 1.77516 0.90270 1.43114 1.68184 51 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 3.48065 0.18536 3.16898 2.33968 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 2.68812 2.63885 3.20857 0.19829 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.78529 3.67455 0.13451 3.24975 54 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 0.14164 3.32236 3.03835 3.03483 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.45303 3.23464 0.19012 3.04221 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 3.46382 0.18674 3.16147 2.33652 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //