INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD2 ACC RF01299 DESC Small nucleolar RNA SNORD2 STATES 211 NODES 65 CLEN 69 W 103 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 23:22:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01299/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 3.963623 CKSUM 1590481330 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.00 NC 36.90 EFP7GF -10.9431 0.71882 ECMLC 0.63555 -5.08518 3.57047 1600000 293942 0.004082 ECMGC 0.38559 -17.64455 -3.32576 1600000 99971 0.004001 ECMLI 0.61755 -3.49652 5.11834 1600000 245293 0.004892 ECMGI 0.40094 -12.91529 0.08852 1600000 73508 0.005442 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 103 148 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 IL 1 1 2 1 6 1 24 105 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 25 105 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 92 a u - - MP 3 2 3 7 6 2 29 104 148 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 -2.268 -2.045 -2.422 1.942 -2.529 -1.291 0.971 -2.790 -2.509 1.926 -3.006 0.535 0.789 -2.498 -0.605 -0.469 ML 4 2 3 7 6 1 22 102 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 21 101 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 17 98 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 24 103 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 24 103 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 91 a u - - MP 9 8 6 13 6 2 28 102 146 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 -3.564 -2.869 -3.655 2.967 -3.770 -4.740 0.444 -3.801 -3.609 1.130 -4.145 0.155 1.205 -3.949 -1.482 -2.564 ML 10 8 6 13 6 1 21 100 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 21 99 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 16 96 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 23 101 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 23 101 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 90 G C - - MP 15 14 6 19 6 2 26 100 144 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 -3.661 -1.495 -3.606 1.112 -4.301 -1.332 0.121 -4.175 -3.849 3.161 -4.182 0.269 -0.128 -3.486 -1.774 -2.636 ML 16 14 6 19 6 1 21 98 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 20 97 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 16 94 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 22 99 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 23 99 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 89 U A - - MP 21 20 6 25 6 2 25 98 142 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 -4.474 -4.466 -4.249 -0.654 -3.009 -4.728 1.733 -3.781 -4.264 -0.483 -4.603 -2.453 3.226 -4.564 0.209 -3.102 ML 22 20 6 25 6 1 20 96 141 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 19 96 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 15 93 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 22 97 142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 22 97 142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 88 G C - - MP 27 26 6 31 6 2 23 96 140 -9.395 -9.334 -0.017 -8.111 -8.390 -8.785 -5.924 -3.677 -6.246 -0.643 -6.862 -5.130 -1.935 -6.495 -5.020 3.828 -5.291 -1.445 -2.298 -5.218 -4.055 -5.107 ML 28 26 6 31 6 1 19 94 139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 17 94 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 15 91 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 20 95 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 20 95 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 87 A U - - MP 33 32 6 37 4 2 21 94 138 -7.606 -7.813 -0.033 -6.227 -4.986 -3.779 -4.834 3.767 -5.883 -7.115 -1.505 -4.795 -4.778 -0.228 -5.378 -1.112 -1.905 -6.042 -3.436 -3.667 ML 34 32 6 37 4 1 18 93 138 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 16 92 137 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 14 91 136 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 20 94 139 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 19 93 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 39 38 6 41 3 1 20 92 136 -8.584 -0.013 -7.238 0.661 -0.844 -0.487 0.200 D 40 38 6 41 3 0 14 89 134 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 18 92 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 42 41 3 44 3 1 19 91 135 -8.584 -0.013 -7.238 1.492 -2.247 -0.538 -1.799 D 43 41 3 44 3 0 13 88 133 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 18 91 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 45 44 3 47 3 1 18 90 134 -8.584 -0.013 -7.238 -1.860 -1.143 -2.610 1.636 D 46 44 3 47 3 0 12 87 132 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 17 90 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 48 47 3 50 3 1 17 89 133 -8.584 -0.013 -7.238 -0.681 -2.063 1.417 -1.100 D 49 47 3 50 3 0 11 86 131 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 16 89 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 51 50 3 53 3 1 16 88 132 -8.584 -0.013 -7.238 1.637 -2.157 -2.133 -1.194 D 52 50 3 53 3 0 11 85 130 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 15 88 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 54 53 3 56 3 1 15 87 131 -8.584 -0.013 -7.238 -0.706 -1.323 -1.166 1.346 D 55 53 3 56 3 0 10 84 129 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 14 87 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 57 56 3 59 3 1 14 86 130 -8.584 -0.013 -7.238 -2.807 -4.178 1.894 -3.542 D 58 56 3 59 3 0 9 83 128 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 86 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 60 59 3 62 3 1 14 85 129 -8.584 -0.013 -7.238 -0.426 -1.599 1.355 -1.445 D 61 59 3 62 3 0 8 82 127 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 85 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 63 62 3 65 3 1 13 84 128 -1.623 -0.675 -4.353 -1.800 1.455 -2.696 -0.293 D 64 62 3 65 3 0 8 81 126 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 13 83 128 -2.545 -0.318 -5.246 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - u - - - ML 66 65 3 68 3 1 13 82 127 -8.521 -0.014 -7.176 0.336 -0.504 -1.265 0.693 D 67 65 3 68 3 0 7 81 125 -6.853 -0.812 -1.245 IL 68 68 3 68 3 1 11 83 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - A - - - ML 69 68 3 71 3 1 12 81 126 -8.584 -0.013 -7.238 1.735 -2.724 -1.615 -2.367 D 70 68 3 71 3 0 6 79 124 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 10 82 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - u - - - ML 72 71 3 74 3 1 11 80 125 -8.584 -0.013 -7.238 -1.274 0.656 -2.114 0.832 D 73 71 3 74 3 0 5 78 123 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 81 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 75 74 3 77 3 1 11 79 124 -8.584 -0.013 -7.238 -2.520 1.734 -3.365 -1.312 D 76 74 3 77 3 0 4 77 122 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 80 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 78 77 3 80 3 1 10 78 123 -8.584 -0.013 -7.238 1.688 -2.585 -1.339 -2.209 D 79 77 3 80 3 0 3 76 121 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 8 79 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 81 80 3 83 3 1 9 77 122 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 82 80 3 83 3 0 3 75 120 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 78 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - C - - - ML 84 83 3 86 3 1 9 76 121 -8.584 -0.013 -7.238 -3.212 1.862 -4.000 -2.362 D 85 83 3 86 3 0 2 74 119 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 7 77 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - U - - - ML 87 86 3 89 3 1 8 75 120 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 88 86 3 89 3 0 1 73 118 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 6 76 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 90 89 3 92 3 1 7 74 119 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 91 89 3 92 3 0 1 72 117 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 5 75 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 93 92 3 95 3 1 7 73 118 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 94 92 3 95 3 0 0 71 116 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 5 74 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 96 95 3 98 3 1 6 72 117 -8.584 -0.013 -7.238 -1.497 1.443 -1.657 -0.713 D 97 95 3 98 3 0 0 70 115 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 73 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 99 98 3 101 3 1 6 71 116 -8.584 -0.013 -7.238 0.089 -2.295 1.284 -1.751 D 100 98 3 101 3 0 0 69 114 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 3 72 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 102 101 3 104 3 1 5 70 115 -8.584 -0.013 -7.238 -1.108 -3.025 1.694 -2.483 D 103 101 3 104 3 0 0 68 113 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 3 71 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 105 104 3 107 3 1 4 69 114 -8.584 -0.013 -7.238 -0.744 -2.044 1.416 -1.020 D 106 104 3 107 3 0 0 67 112 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 2 70 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - A - - - ML 108 107 3 110 3 1 4 68 113 -8.584 -0.013 -7.238 1.726 -2.697 -1.562 -2.336 D 109 107 3 110 3 0 0 66 111 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 69 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 111 110 3 113 3 1 3 67 112 -8.584 -0.013 -7.238 -2.461 1.718 -3.312 -1.227 D 112 110 3 113 3 0 0 65 110 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 68 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 114 113 3 116 3 1 3 66 111 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 115 113 3 116 3 0 0 64 109 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 67 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 117 116 3 119 3 1 2 65 110 -8.584 -0.013 -7.238 -2.807 -4.178 1.894 -3.542 D 118 116 3 119 3 0 0 63 108 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 66 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 120 119 3 122 3 1 2 64 109 -3.471 -0.147 -7.238 1.887 -3.605 -3.124 -3.272 D 121 119 3 122 3 0 0 62 107 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 65 110 -1.256 -0.872 -4.842 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - C - - - ML 123 122 3 125 3 1 2 63 108 -8.584 -0.013 -7.238 -1.535 1.455 -1.889 -0.635 D 124 122 3 125 3 0 0 61 106 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 64 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - C - - - ML 126 125 3 128 3 1 1 62 107 -8.584 -0.013 -7.238 -1.360 1.011 -2.234 0.467 D 127 125 3 128 3 0 0 60 105 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 63 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - U - - - ML 129 128 3 131 3 1 1 61 106 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 130 128 3 131 3 0 0 59 104 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 62 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - G - - - ML 132 131 3 134 3 1 1 60 105 -8.584 -0.013 -7.238 -1.808 -2.824 1.697 -1.591 D 133 131 3 134 3 0 0 58 103 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 61 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - A - - - ML 135 134 3 137 3 1 1 59 104 -8.584 -0.013 -7.238 1.133 -1.011 -1.438 -0.086 D 136 134 3 137 3 0 0 57 102 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 60 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - - - ML 138 137 3 140 3 1 1 58 103 -8.584 -0.013 -7.238 1.090 -1.328 -0.676 -0.239 D 139 137 3 140 3 0 0 56 101 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 59 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 141 140 3 143 3 1 1 57 102 -8.584 -0.013 -7.238 1.478 -1.267 -1.295 -1.357 D 142 140 3 143 3 0 0 55 100 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 58 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - U - - - ML 144 143 3 146 3 1 1 56 101 -8.584 -0.013 -7.238 -1.057 -1.651 -2.298 1.584 D 145 143 3 146 3 0 0 54 99 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 57 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - G - - - ML 147 146 3 149 3 1 1 55 100 -8.584 -0.058 -4.766 -1.108 -3.025 1.694 -2.483 D 148 146 3 149 3 0 0 53 98 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 56 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - a - - - ML 150 149 3 152 3 1 1 54 99 -8.540 -0.014 -7.194 0.588 -1.191 0.156 -0.082 D 151 149 3 152 3 0 0 52 97 -6.688 -0.951 -1.080 IL 152 152 3 152 3 1 1 55 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - A - - - ML 153 152 3 155 3 1 1 53 98 -8.584 -0.013 -7.238 1.428 -1.744 -1.043 -0.928 D 154 152 3 155 3 0 0 51 96 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 54 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 156 155 3 158 3 1 1 52 97 -8.584 -0.013 -7.238 -1.201 -1.750 1.495 -1.155 D 157 155 3 158 3 0 0 49 94 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 53 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - A - - - ML 159 158 3 161 3 1 1 51 96 -8.584 -0.052 -4.944 1.691 -2.333 -2.267 -1.457 D 160 158 3 161 3 0 0 48 93 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 52 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - G - - - ML 162 161 3 164 3 1 1 50 95 -3.706 -0.126 -7.200 -0.571 -1.538 1.063 -0.164 D 163 161 3 164 3 0 0 44 89 -6.626 -2.139 -0.391 IL 164 164 3 164 3 1 1 55 100 -0.593 -1.665 -5.542 0.000 0.000 0.000 0.000 [ MATL 49 ] 63 - A - - - ML 165 164 3 167 3 1 1 38 68 -4.000 -0.104 -7.200 1.320 -1.043 -1.581 -0.548 D 166 164 3 167 3 0 0 34 64 -6.626 -1.012 -1.017 IL 167 167 3 167 3 1 1 41 71 -0.885 -1.226 -5.015 0.000 0.000 0.000 0.000 [ MATL 50 ] 68 - a - - - ML 168 167 3 170 3 1 1 31 52 -8.584 -0.013 -7.238 0.718 -0.860 -0.381 0.052 D 169 167 3 170 3 0 0 29 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 33 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 69 - U - - - ML 171 170 3 173 3 1 1 30 51 -4.477 -0.076 -7.238 -0.734 -1.008 -1.927 1.400 D 172 170 3 173 3 0 0 28 49 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 52 -1.645 -0.664 -4.345 0.000 0.000 0.000 0.000 [ MATL 52 ] 71 - A - - - ML 174 173 3 176 3 1 1 29 50 -8.584 -0.013 -7.238 1.080 -1.287 -0.920 -0.078 D 175 173 3 176 3 0 0 27 48 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 31 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 72 - c - - - ML 177 176 3 179 3 1 1 28 49 -8.584 -0.013 -7.238 -0.394 0.721 -1.231 0.220 D 178 176 3 179 3 0 0 26 47 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 73 - u - - - ML 180 179 3 182 3 1 1 27 48 -8.584 -0.013 -7.238 0.023 -0.287 -0.957 0.722 D 181 179 3 182 3 0 0 25 46 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 74 - c - - - ML 183 182 3 185 3 1 1 26 47 -3.721 -0.164 -4.993 -0.509 0.726 -0.971 0.181 D 184 182 3 185 3 0 0 23 44 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 28 49 -1.274 -0.864 -4.748 0.000 0.000 0.000 0.000 [ MATL 56 ] 77 - a - - - ML 186 185 3 188 3 1 1 23 43 -8.548 -0.014 -7.202 0.783 -0.749 -1.268 0.343 D 187 185 3 188 3 0 0 22 42 -6.609 -1.029 -1.001 IL 188 188 3 188 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 78 - U - - - ML 189 188 3 191 3 1 1 22 42 -8.584 -0.013 -7.238 -0.966 -0.817 -2.005 1.418 D 190 188 3 191 3 0 0 20 40 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 79 - U - - - ML 192 191 3 194 3 1 1 21 41 -8.584 -0.013 -7.238 -0.908 -1.114 -2.044 1.466 D 193 191 3 194 3 0 0 19 39 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 80 - G - - - ML 195 194 3 197 3 1 1 20 40 -4.477 -0.076 -7.238 0.105 -1.731 1.057 -0.883 D 196 194 3 197 3 0 0 18 38 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 42 -1.327 -0.842 -4.523 0.000 0.000 0.000 0.000 [ MATL 60 ] 83 - C - - - ML 198 197 3 200 3 1 1 16 34 -8.584 -0.013 -7.238 -3.212 1.862 -4.000 -2.362 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 84 - U - - - ML 201 200 3 203 3 1 1 14 33 -8.584 -0.013 -7.238 -2.661 -2.464 -3.434 1.835 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 85 - G - - - ML 204 203 3 206 3 1 1 13 31 -8.584 -0.013 -7.238 -1.108 -3.025 1.694 -2.483 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 86 - A - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 1.656 -2.508 -1.175 -2.119 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD2 ACC RF01299 DESC Small nucleolar RNA SNORD2 LENG 69 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 23:22:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01299/CM NSEQ 17 EFFN 4.611084 CKSUM 1590481330 STATS LOCAL MSV -8.2587 0.71882 STATS LOCAL VITERBI -8.7815 0.71882 STATS LOCAL FORWARD -3.5386 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29692 1.62079 1.46015 1.21509 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 0.00000 * 1 1.24230 1.82049 1.04787 1.61621 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 2 0.60490 2.50851 1.62512 1.73959 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 3 1.80115 2.34179 0.42442 2.46996 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 4 3.14040 1.55969 2.92953 0.36656 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 5 3.14948 4.05540 0.08170 4.00376 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 6 0.12456 3.85547 2.63212 3.72857 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 7 0.91511 2.00064 1.73039 1.24804 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 8 0.32768 3.08059 1.76039 2.78872 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 9 2.81701 2.23070 3.33698 0.22663 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 10 1.90834 2.91228 0.37550 2.20385 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 11 0.22703 2.99534 2.99126 2.27443 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 12 1.93211 2.39198 2.23125 0.42111 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 13 3.51118 4.47790 0.06090 4.02495 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 14 1.72238 2.54356 0.41521 2.49409 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 15 2.77421 0.34648 3.40594 1.62326 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.53177 1.03599 2.85490 0.06953 2.70059 1.09861 0.40547 16 1.14574 1.75067 2.31042 0.89371 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02673 4.32849 4.32849 1.46634 0.26236 0.36297 1.18943 17 0.16407 3.41609 2.55916 3.19166 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 18 2.38278 0.90249 2.97609 0.79595 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 19 3.31284 0.16057 3.89167 2.39125 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 20 0.19541 3.31650 2.35183 3.07850 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 21 3.42117 3.25687 3.96066 0.09457 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 22 3.82869 0.07775 4.35240 3.21406 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 23 3.42117 3.25687 3.96066 0.09457 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 24 3.42117 3.25687 3.96066 0.09457 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 25 3.42117 3.25687 3.96066 0.09457 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 26 2.55839 0.34777 2.59121 1.95629 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 27 1.33165 3.10276 0.46802 2.73654 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 28 2.21281 3.62280 0.19204 3.25389 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 29 1.95714 2.90020 0.37617 2.14352 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 30 0.16961 3.39646 2.51952 3.16966 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 31 3.26908 0.17065 3.85375 2.32648 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 32 3.42117 3.25687 3.96066 0.09457 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 33 3.51118 4.47790 0.06090 4.02495 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 34 0.06380 4.07953 3.73298 3.86458 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12585 2.24752 4.37450 0.77713 0.61567 1.09861 0.40547 35 2.58037 0.34175 2.76738 1.89112 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 36 2.44516 0.65184 3.06498 1.06262 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 37 3.42117 3.25687 3.96066 0.09457 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 38 2.77623 3.48987 0.18765 2.54697 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 39 0.57297 2.12991 2.45841 1.46216 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 40 0.60675 2.37203 1.87338 1.57028 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 41 0.33397 2.29904 2.34057 2.43842 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 42 2.18536 2.64550 3.11281 0.25862 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 43 2.21281 3.62280 0.19204 3.25389 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05890 4.37450 3.11000 1.46634 0.26236 1.09861 0.40547 44 0.96845 2.26461 1.26255 1.45446 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02637 4.34197 4.34197 1.46634 0.26236 0.44773 1.01909 45 0.37015 2.68327 2.14633 2.08655 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 46 2.31409 2.65709 0.32097 2.24860 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 47 0.19120 3.12347 3.09077 2.47025 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05412 4.37450 3.21669 1.46634 0.26236 1.09861 0.40547 48 1.83858 2.53718 0.61139 1.51744 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.11051 2.38958 4.34662 1.82333 0.17613 1.64538 0.21436 49 0.44137 2.14612 2.57322 1.81020 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09384 2.56883 4.34662 1.39532 0.28469 0.48756 0.95223 50 0.87482 2.01025 1.65327 1.35601 68 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 51 1.94590 2.14115 2.82646 0.38508 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07274 2.85490 4.37450 0.39175 1.12662 1.09861 0.40547 52 0.61315 2.34244 2.05645 1.45091 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 53 1.69375 0.85349 2.28216 1.24416 72 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 54 1.37457 1.58877 2.07041 0.87529 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 55 1.78444 0.84986 2.08313 1.27262 74 c - - _ 1.38629 1.38629 1.38629 1.38629 0.13848 2.40352 3.24619 0.79144 0.60366 1.09861 0.40547 56 0.82244 1.93386 2.31873 1.14679 77 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02621 4.34782 4.34782 1.46634 0.26236 0.49905 0.93421 57 2.12659 1.99240 2.88499 0.37319 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 58 2.07856 2.22193 2.91630 0.33918 79 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 59 1.32632 2.67392 0.61967 2.06006 80 G - - _ 1.38629 1.38629 1.38629 1.38629 0.07274 2.85490 4.37450 0.84831 0.55886 1.09861 0.40547 60 3.82869 0.07775 4.35240 3.21406 83 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 61 3.42117 3.25687 3.96066 0.09457 84 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 62 2.21281 3.62280 0.19204 3.25389 85 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 63 0.21686 3.26162 2.22983 3.01428 86 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 64 3.94032 3.01685 3.66013 0.09886 87 U - - > 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 65 4.15553 0.09920 3.91588 2.83290 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 66 0.46835 3.09390 1.29598 2.90018 89 A - - > 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 67 2.73203 0.46804 2.43424 1.50949 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 68 1.84881 2.02224 2.32464 0.49037 91 U - - > 1.38629 1.38629 1.38629 1.38629 0.02551 4.37450 4.37450 1.46634 0.26236 1.09861 0.40547 69 2.00182 1.23278 1.75660 0.91429 92 u - - > 1.38629 1.38629 1.38629 1.38629 0.01284 4.36182 * 1.46634 0.26236 0.00000 * //