INFERNAL1/a [1.1.5 | Sep 2023] NAME sR40 ACC RF01297 DESC Small nucleolar RNA sR40 STATES 192 NODES 55 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 20:21:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01297/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.496094 CKSUM 3037205944 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 97.40 NC 41.20 EFP7GF -5.9122 0.72420 ECMLC 0.66690 -8.81681 0.59058 1600000 636558 0.001885 ECMGC 0.41862 -18.25123 -3.99635 1600000 156197 0.002561 ECMLI 0.55095 -9.67225 1.48479 1600000 560758 0.002140 ECMGI 0.40660 -14.88028 -1.41803 1600000 95339 0.004196 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 98 -6.758 -6.965 -0.061 -5.380 IL 1 1 2 1 4 1 17 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 2 1 15 77 98 -8.144 -0.005 -1.207 -2.364 1.621 -1.749 D 4 2 3 5 2 0 14 76 97 -8.445 -0.004 IL 5 5 3 5 2 1 16 78 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 2 ] - - - - - - B 6 5 3 7 54 0 14 76 97 [ BEGL 3 ] - - - - - - S 7 6 1 8 4 0 0 29 48 -0.048 -6.741 -6.148 -6.788 [ MATP 4 ] 2 16 G C - - MP 8 7 1 12 6 2 2 29 48 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 9 7 1 12 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 10 7 1 12 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 11 7 1 12 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 12 12 5 12 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 13 13 6 13 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 15 C G - - MP 14 13 6 18 6 2 2 27 46 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 15 13 6 18 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 6 18 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 6 18 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 14 C G - - MP 20 19 6 24 4 2 2 25 44 -6.758 -6.965 -0.061 -5.380 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 21 19 6 24 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 23 19 6 24 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 24 24 5 24 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 25 25 6 25 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - A - - - ML 26 25 6 28 3 1 1 22 41 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 27 25 6 28 3 0 0 21 40 -6.174 -1.687 -0.566 IL 28 28 3 28 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - U - - - ML 29 28 3 31 3 1 1 21 40 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 30 28 3 31 3 0 0 20 39 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - G - - - ML 32 31 3 34 3 1 1 20 39 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 33 31 3 34 3 0 0 19 38 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 35 34 3 37 3 1 1 19 38 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 36 34 3 37 3 0 0 18 37 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - G - - - ML 38 37 3 40 3 1 1 18 36 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 39 37 3 40 3 0 0 17 36 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - G - - - ML 41 40 3 43 3 1 1 16 35 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 42 40 3 43 3 0 0 16 34 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 44 43 3 46 3 1 1 15 33 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 45 43 3 46 3 0 0 15 33 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - u - - - ML 47 46 3 49 3 1 1 13 32 -7.789 -0.023 -6.443 -0.569 0.393 -1.330 0.691 D 48 46 3 49 3 0 0 13 32 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - A - - - ML 50 49 3 52 2 1 1 1 1 * 0.000 1.631 -2.022 -1.689 -1.532 D 51 49 3 52 2 0 0 0 0 * 0.000 IL 52 52 3 52 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 16 ] - - - - - - E 53 52 3 -1 0 0 0 0 0 [ BEGR 17 ] - - - - - - S 54 6 1 55 3 0 2 61 80 -7.789 -0.023 -6.443 IL 55 55 2 55 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - G - - - ML 56 55 2 58 3 1 3 61 80 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 57 55 2 58 3 0 0 59 79 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 2 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - G - - - ML 59 58 3 61 3 1 3 60 79 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 60 58 3 61 3 0 0 58 78 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - G - - - ML 62 61 3 64 3 1 2 59 78 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 63 61 3 64 3 0 0 57 77 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - U - - - ML 65 64 3 67 3 1 2 57 77 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 66 64 3 67 3 0 0 56 76 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - U - - - ML 68 67 3 70 3 1 2 56 76 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 69 67 3 70 3 0 0 55 75 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 71 70 3 73 3 1 1 55 75 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 72 70 3 73 3 0 0 54 74 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - G - - - ML 74 73 3 76 3 1 1 54 74 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 75 73 3 76 3 0 0 53 73 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - C - - - ML 77 76 3 79 3 1 1 53 73 -7.789 -0.023 -6.443 -1.326 1.490 -2.132 -0.826 D 78 76 3 79 3 0 0 52 71 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - U - - - ML 80 79 3 82 3 1 1 52 72 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 81 79 3 82 3 0 0 51 70 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - G - - - ML 83 82 3 85 3 1 1 51 70 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 84 82 3 85 3 0 0 50 69 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - A - - - ML 86 85 3 88 5 1 1 50 69 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 87 85 3 88 5 0 0 49 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 88 88 3 88 5 1 1 50 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 28 61 C G - - MP 89 88 3 93 6 2 2 49 68 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 90 88 3 93 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 60 C G - - MP 95 94 6 99 6 2 2 47 66 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 96 94 6 99 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 59 U A - - MP 101 100 6 105 6 2 2 45 64 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 102 100 6 105 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 58 C G - - MP 107 106 6 111 6 2 2 43 62 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 108 106 6 111 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 57 G C - - MP 113 112 6 117 6 2 2 41 60 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 114 112 6 117 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 56 G C - - MP 119 118 6 123 6 2 2 39 58 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 120 118 6 123 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 55 G C - - MP 125 124 6 129 6 2 2 37 56 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 126 124 6 129 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 54 G C - - MP 131 130 6 135 6 2 2 35 54 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 132 130 6 135 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 36 53 C G - - MP 137 136 6 141 4 2 2 33 52 -6.758 -6.965 -0.061 -5.380 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 138 136 6 141 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 141 141 5 141 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - G - - - ML 143 142 6 145 3 1 1 30 49 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 144 142 6 145 3 0 0 29 48 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - U - - - ML 146 145 3 148 3 1 1 29 48 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 147 145 3 148 3 0 0 28 47 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - G - - - ML 149 148 3 151 3 1 1 28 47 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 150 148 3 151 3 0 0 27 46 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - - - ML 152 151 3 154 3 1 1 27 46 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 153 151 3 154 3 0 0 26 45 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - U - - - ML 155 154 3 157 3 1 1 26 45 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 156 154 3 157 3 0 0 25 44 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - G - - - ML 158 157 3 160 3 1 1 25 44 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 159 157 3 160 3 0 0 24 43 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - A - - - ML 161 160 3 163 3 1 1 24 43 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 162 160 3 163 3 0 0 23 42 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - A - - - ML 164 163 3 166 3 1 1 22 41 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 165 163 3 166 3 0 0 21 40 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - C - - - ML 167 166 3 169 3 1 1 21 40 -7.789 -0.023 -6.443 -1.326 1.490 -2.132 -0.826 D 168 166 3 169 3 0 0 20 39 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - C - - - ML 170 169 3 172 3 1 1 20 39 -7.789 -0.023 -6.443 -1.326 1.490 -2.132 -0.826 D 171 169 3 172 3 0 0 19 38 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - U - - - ML 173 172 3 175 3 1 1 19 38 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 174 172 3 175 3 0 0 18 37 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - U - - - ML 176 175 3 178 3 1 1 18 36 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 177 175 3 178 3 0 0 17 36 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - U - - - ML 179 178 3 181 3 1 1 16 35 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 180 178 3 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - G - - - ML 182 181 3 184 3 1 1 15 33 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - G - - - ML 185 184 3 187 3 1 1 13 32 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - A - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 1.631 -2.022 -1.689 -1.532 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR40 ACC RF01297 DESC Small nucleolar RNA sR40 LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 20:21:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01297/CM NSEQ 2 EFFN 1.496094 CKSUM 3037205944 STATS LOCAL MSV -8.1120 0.72420 STATS LOCAL VITERBI -8.8819 0.72420 STATS LOCAL FORWARD -3.5450 0.72420 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55619 1.49105 1.05669 1.53099 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.22280 3.02490 0.26300 2.59843 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.30554 2.76567 0.25959 2.71824 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.76174 0.37860 2.46998 1.78731 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.75972 0.37895 2.46920 1.78702 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.25557 2.78789 2.55713 2.44824 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.19729 2.23435 2.69294 0.33666 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.22280 3.02490 0.26300 2.59843 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.25557 2.78789 2.55713 2.44824 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.22280 3.02490 0.26300 2.59843 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.22280 3.02490 0.26300 2.59843 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.25557 2.78789 2.55713 2.44824 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.78094 1.11375 2.30787 0.90703 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.25557 2.78789 2.55713 2.44824 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.05833 2.63233 0.32954 2.51121 14 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.05716 2.63105 0.33008 2.50946 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.91679 0.30673 2.58458 2.00531 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.22280 3.02490 0.26300 2.59843 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.22280 3.02490 0.26300 2.59843 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.22280 3.02490 0.26300 2.59843 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.19729 2.23435 2.69294 0.33666 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.19729 2.23435 2.69294 0.33666 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.19729 2.23435 2.69294 0.33666 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.22280 3.02490 0.26300 2.59843 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.30545 0.35353 2.86415 1.95866 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.19729 2.23435 2.69294 0.33666 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.22280 3.02490 0.26300 2.59843 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.25557 2.78789 2.55713 2.44824 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.75584 0.37963 2.46769 1.78646 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.75697 0.37944 2.46813 1.78662 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.51987 1.58338 2.20914 0.50343 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.75673 0.37948 2.46803 1.78659 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.30089 2.76142 0.26108 2.71191 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.30062 2.76117 0.26117 2.71154 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.30037 2.76095 0.26125 2.71121 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.30015 2.76075 0.26132 2.71091 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.75456 0.37986 2.46719 1.78627 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.22280 3.02490 0.26300 2.59843 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.19729 2.23435 2.69294 0.33666 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.22280 3.02490 0.26300 2.59843 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.25557 2.78789 2.55713 2.44824 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.19729 2.23435 2.69294 0.33666 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.22280 3.02490 0.26300 2.59843 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.25557 2.78789 2.55713 2.44824 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.25557 2.78789 2.55713 2.44824 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.30545 0.35353 2.86415 1.95866 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.30545 0.35353 2.86415 1.95866 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.19729 2.23435 2.69294 0.33666 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.19729 2.23435 2.69294 0.33666 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.19729 2.23435 2.69294 0.33666 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.22280 3.02490 0.26300 2.59843 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.22280 3.02490 0.26300 2.59843 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.25557 2.78789 2.55713 2.44824 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.05838 2.63239 0.32952 2.51129 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.92937 0.30487 2.58939 2.00779 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.92977 0.30481 2.58955 2.00787 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.93012 0.30476 2.58968 2.00794 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.93027 0.30474 2.58973 2.00797 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.05868 2.63271 0.32938 2.51174 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.57460 2.38324 1.41987 2.27231 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.05732 2.63123 0.33000 2.50970 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.05524 2.62896 0.33095 2.50659 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //