# STOCKHOLM 1.0
#=GF ID snoU31b
#=GF AC RF01285
#=GF DE Small nucleolar RNA U31b
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 37.0
#=GF NC 36.9
#=GF TC 37.0
#=GF SE Predicted; Wilkinson A
#=GF SS Predicted; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.03 -Z 2958934 CM SEQDB
#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
#=GF DR URL; http://lowelab.ucsc.edu/snoRNAdb/;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300157;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 11780637
#=GF RT Multiple snoRNA gene clusters from Arabidopsis.
#=GF RA Brown JW, Clark GP, Leader DJ, Simpson CG, Lowe T
#=GF RL RNA. 2001;7:1817-1832.
#=GF WK Small_nucleolar_RNA
#=GF SQ 7

AC068667.6/51178-51267     GAAAGUGAUGAUAAG-GAAUUGUCGCCCCAGGCUUAAUCUGCAUCCAUUACGAUGGUUGUAACAUGGUGAUUGACUAUCUCU---GUCUGAUUC
AC150706.4/101697-101776   GGAUGUGAUGAUA-G-UAAUUGUCGCCCCAGUCUUAAUUUGCACCAAU-------GGUGUAAUAUGGUGACUGAC--ACUUU---AUCUGAUCC
AASG02001667.1/15770-15853 GGAAAUGAUGAUAAG-UA-CUGUCGCCCCAGUCUUA-----CUUGCAUAUAAAUAGAUGCAAGUUGGUGAUUGACUUUUAUU---AUCUGAUUC
AARH01004696.1/63929-64010 GAAAAUGAUGAUACU-UG-UUGUCGCCCCAGUCUUA-----CUUGCAUUUUGA--GGUGCAGGAUGGUGAUUGACAUUCCUU---GUCUGAUUC
AM455011.2/13557-13476     GGAUAUGAUGAUA---GUUUUGUCGCCCCAGUCUUA-CCUGCAUCUCUU-----GAUGCYGAGAUGGUGAUCGACSUUUUAU---AUCUGAUUC
AACV01008043.1/13929-14014 GAGGAUGAUGAUGUGAUAUUUGUCGCCCCAGUCUUA---UGAUCCGCUGUAAU-CGCGGAUGUGUGGUGAUUGAC-AUGUAA---AUCUGACUC
AAAA02011143.1/20357-20442 GAGCGUGAUGAUAUGAUAUUUGUCGCCCCAGUCUUA---GGAUCCGGAU-----UCCGGGCCAGUGCUGAUUGACAUGUUAUCAGAUCUGACUC
#=GC SS_cons               <<<____________.____________________...______________.____________________________...______>>>
#=GC RF                    GaaaaUGAUGAUAuG.UAuUUGUCGCCCCAGUCUUA...UGcuuccaUuuaaa.uguuGuaauaUGGUGAUUGACuuuuUuU...AUCUGAuuC
//
