INFERNAL1/a [1.1.5 | Sep 2023] NAME snoR53Y ACC RF01279 DESC Small nucleolar RNA snoR53Y STATES 232 NODES 73 CLEN 76 W 134 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 02:01:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01279/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.484863 CKSUM 4188739905 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.10 NC 42.60 EFP7GF -8.1065 0.71871 ECMLC 0.65631 -5.78966 2.97983 1600000 379123 0.003165 ECMGC 0.40174 -14.83876 -1.45112 1600000 86667 0.004615 ECMLI 0.57888 -4.74168 4.73651 1600000 289766 0.004141 ECMGI 0.41596 -9.43494 2.48108 1600000 56841 0.007037 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 134 201 -7.059 -8.305 -0.070 -4.758 IL 1 1 2 1 4 1 30 135 202 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 31 135 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 105 - a - - MR 3 2 3 5 5 1 33 134 201 -7.267 -0.035 -7.082 -7.295 -8.186 0.729 -0.468 -1.078 0.196 D 4 2 3 5 5 0 25 132 199 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 29 134 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 104 G C - - MP 6 5 3 10 6 2 33 133 200 -9.192 -9.131 -0.020 -7.908 -8.187 -8.582 -4.025 -2.740 -4.028 1.571 -4.681 -4.591 -0.085 -4.391 -3.975 3.263 -4.368 -0.364 -0.384 -3.994 -2.076 -2.923 ML 7 5 3 10 6 1 27 131 198 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 26 131 198 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 22 127 194 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 29 132 199 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 29 132 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 103 U A - - MP 12 11 6 16 6 2 32 131 198 -9.192 -9.131 -0.020 -7.908 -8.187 -8.582 -4.673 -4.507 -4.456 -0.771 -3.301 -4.975 1.035 -4.028 -4.457 -0.579 -4.806 -2.391 3.517 -4.803 -0.965 -3.227 ML 13 11 6 16 6 1 26 129 196 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 25 129 196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 21 125 192 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 28 130 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 28 130 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 102 U A - - MP 18 17 6 22 6 2 30 129 196 -9.192 -9.131 -0.020 -7.908 -8.187 -8.582 -4.673 -4.507 -4.456 -0.771 -3.301 -4.975 1.035 -4.028 -4.457 -0.579 -4.806 -2.391 3.517 -4.803 -0.965 -3.227 ML 19 17 6 22 6 1 25 127 194 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 24 127 194 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 21 124 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 27 128 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 27 128 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 101 C G - - MP 24 23 6 28 6 2 28 127 194 -9.192 -9.131 -0.020 -7.908 -8.187 -8.582 -4.985 -4.928 -4.599 -1.126 -3.229 -4.953 3.666 -4.082 -4.666 -0.939 -4.877 -2.884 0.237 -5.024 -0.949 -3.492 ML 25 23 6 28 6 1 25 125 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 23 125 192 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 20 122 190 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 26 126 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 26 126 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 100 C G - - MP 30 29 6 34 4 2 27 125 192 -7.159 -7.366 -0.046 -5.780 -4.985 -4.928 -4.599 -1.126 -3.229 -4.953 3.666 -4.082 -4.666 -0.939 -4.877 -2.884 0.237 -5.024 -0.949 -3.492 ML 31 29 6 34 4 1 24 124 191 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 21 123 190 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 20 122 189 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 25 125 192 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 25 125 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - C - - - ML 36 35 6 38 3 1 25 123 190 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 37 35 6 38 3 0 19 121 188 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 24 124 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - a - - - ML 39 38 3 41 3 1 24 122 189 -8.162 -0.018 -6.816 0.791 -0.993 -1.154 0.398 D 40 38 3 41 3 0 18 120 187 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 23 123 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - a - - - ML 42 41 3 44 3 1 24 121 188 -8.162 -0.018 -6.816 0.883 -1.565 0.395 -0.991 D 43 41 3 44 3 0 18 119 186 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 22 122 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - U - - - ML 45 44 3 47 3 1 23 120 187 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 46 44 3 47 3 0 17 118 185 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 22 121 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 48 47 3 50 3 1 22 119 186 -8.162 -0.018 -6.816 -1.997 -3.277 1.803 -2.664 D 49 47 3 50 3 0 16 117 184 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 21 120 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - A - - - ML 51 50 3 53 3 1 21 118 185 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 52 50 3 53 3 0 15 115 182 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 20 119 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 54 53 3 56 3 1 21 117 184 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 55 53 3 56 3 0 15 114 181 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 20 118 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - G - - - ML 57 56 3 59 3 1 20 116 183 -8.162 -0.018 -6.816 -1.997 -3.277 1.803 -2.664 D 58 56 3 59 3 0 14 113 180 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 19 117 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - g - - - ML 60 59 3 62 3 1 19 115 182 -3.643 -0.134 -6.816 -0.353 -0.533 0.431 0.236 D 61 59 3 62 3 0 13 110 177 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 18 116 183 -1.299 -0.853 -4.635 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 63 62 3 65 3 1 19 114 181 -1.989 -0.436 -6.816 -1.858 -1.790 -2.608 1.710 D 64 62 3 65 3 0 13 104 170 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 19 118 185 -0.398 -2.116 -6.565 0.000 0.000 0.000 0.000 [ MATL 17 ] 29 - A - - - ML 66 65 3 68 3 1 18 103 163 -8.162 -0.018 -6.816 1.404 -1.520 -1.506 -0.615 D 67 65 3 68 3 0 12 101 160 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 17 104 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 30 - u - - - ML 69 68 3 71 3 1 17 102 162 -2.532 -0.289 -6.816 0.082 -0.356 -1.175 0.780 D 70 68 3 71 3 0 11 99 159 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 17 104 164 -0.717 -1.430 -5.609 0.000 0.000 0.000 0.000 [ MATL 19 ] 36 - u - - - ML 72 71 3 74 3 1 16 100 160 -8.162 -0.018 -6.816 -0.065 -0.123 -0.596 0.550 D 73 71 3 74 3 0 10 98 158 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 15 101 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 37 - A - - - ML 75 74 3 77 3 1 16 99 159 -8.162 -0.018 -6.816 1.393 -1.503 -1.493 -0.588 D 76 74 3 77 3 0 10 97 157 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 14 100 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 38 - A - - - ML 78 77 3 80 3 1 15 98 158 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 79 77 3 80 3 0 9 96 156 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 14 99 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 39 - C - - - ML 81 80 3 83 3 1 14 97 157 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 82 80 3 83 3 0 8 95 155 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 13 98 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 40 - C - - - ML 84 83 3 86 3 1 14 96 156 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 85 83 3 86 3 0 8 94 154 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 12 97 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 41 - A - - - ML 87 86 3 89 3 1 13 95 155 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 88 86 3 89 3 0 7 93 153 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 12 96 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 42 - U - - - ML 90 89 3 92 3 1 12 94 154 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 91 89 3 92 3 0 6 92 152 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 11 95 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 43 - G - - - ML 93 92 3 95 3 1 12 93 153 -8.162 -0.018 -6.816 -1.997 -3.277 1.803 -2.664 D 94 92 3 95 3 0 6 91 151 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 10 94 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 44 - C - - - ML 96 95 3 98 3 1 11 92 152 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 97 95 3 98 3 0 5 90 150 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 10 93 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 45 - U - - - ML 99 98 3 101 3 1 10 91 151 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 100 98 3 101 3 0 5 89 149 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 9 92 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 46 - A - - - ML 102 101 3 104 3 1 10 90 150 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 103 101 3 104 3 0 4 88 148 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 8 91 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 47 - A - - - ML 105 104 3 107 3 1 9 89 149 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 106 104 3 107 3 0 3 87 147 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 8 90 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 48 - U - - - ML 108 107 3 110 3 1 8 88 148 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 109 107 3 110 3 0 3 86 146 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 7 89 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 49 - g - - - ML 111 110 3 113 3 1 7 87 147 -8.162 -0.018 -6.816 0.238 -0.980 0.283 0.134 D 112 110 3 113 3 0 2 85 145 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 6 88 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 50 - C - - - ML 114 113 3 116 3 1 6 86 146 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 115 113 3 116 3 0 2 84 144 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 6 87 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 51 - U - - - ML 117 116 3 119 3 1 5 86 145 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 118 116 3 119 3 0 1 83 143 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 5 86 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 52 - G - - - ML 120 119 3 122 3 1 4 85 144 -8.162 -0.018 -6.816 -1.997 -3.277 1.803 -2.664 D 121 119 3 122 3 0 1 82 142 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 4 85 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 53 - A - - - ML 123 122 3 125 3 1 3 84 143 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 124 122 3 125 3 0 0 81 141 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 3 84 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 54 - U - - - ML 126 125 3 128 3 1 2 83 142 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 127 125 3 128 3 0 0 81 140 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 83 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 55 - u - - - ML 129 128 3 131 3 1 1 82 141 -8.162 -0.413 -2.026 -0.370 0.192 -0.282 0.335 D 130 128 3 131 3 0 0 80 140 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 3 82 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 56 - A - - - ML 132 131 3 134 3 1 3 81 141 -3.195 -0.186 -6.426 1.621 -1.988 -1.659 -1.495 D 133 131 3 134 3 0 0 79 139 -7.985 -0.316 -2.377 IL 134 134 3 134 3 1 2 81 141 -1.295 -0.855 -4.653 0.000 0.000 0.000 0.000 [ MATL 40 ] 59 - U - - - ML 135 134 3 137 3 1 2 80 139 -8.162 -0.018 -6.816 -1.112 -0.496 -1.862 1.352 D 136 134 3 137 3 0 0 77 137 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 80 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 60 - u - - - ML 138 137 3 140 3 1 2 79 138 -8.162 -0.018 -6.816 -0.151 0.257 -1.254 0.571 D 139 137 3 140 3 0 0 76 136 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 79 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 61 - u - - - ML 141 140 3 143 3 1 2 78 137 -8.162 -0.018 -6.816 -0.486 -0.086 -0.726 0.798 D 142 140 3 143 3 0 0 75 135 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 78 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 62 - u - - - ML 144 143 3 146 3 1 1 77 136 -8.162 -0.018 -6.816 -0.051 -0.887 -0.120 0.654 D 145 143 3 146 3 0 0 74 134 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 77 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 63 - g - - - ML 147 146 3 149 3 1 1 76 135 -8.162 -0.018 -6.816 0.283 -1.143 0.559 -0.222 D 148 146 3 149 3 0 0 73 133 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 76 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 64 - U - - - ML 150 149 3 152 3 1 1 75 134 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 151 149 3 152 3 0 0 72 132 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 75 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 65 - G - - - ML 153 152 3 155 3 1 1 74 133 -8.162 -0.018 -6.816 -0.932 -1.789 1.356 -0.675 D 154 152 3 155 3 0 0 71 131 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 74 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 66 - A - - - ML 156 155 3 158 3 1 1 73 132 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 157 155 3 158 3 0 0 70 130 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 73 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 67 - c - - - ML 159 158 3 161 3 1 1 72 131 -8.162 -0.018 -6.816 -1.003 0.996 -1.832 0.294 D 160 158 3 161 3 0 0 70 129 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 72 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 68 - u - - - ML 162 161 3 164 3 1 1 71 130 -8.162 -0.299 -2.444 -0.065 -0.068 -0.610 0.521 D 163 161 3 164 3 0 0 69 128 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 72 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 69 - G - - - ML 165 164 3 167 3 1 1 70 130 -7.884 -0.022 -6.538 -1.409 -2.602 1.681 -1.988 D 166 164 3 167 3 0 0 68 127 -7.687 -3.200 -0.174 IL 167 167 3 167 3 1 1 71 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 70 - A - - - ML 168 167 3 170 3 1 1 69 129 -7.884 -0.022 -6.538 1.682 -2.211 -1.859 -1.738 D 169 167 3 170 3 0 0 68 127 -7.687 -0.399 -2.079 IL 170 170 3 170 3 1 1 70 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 71 - A - - - ML 171 170 3 173 3 1 1 68 128 -8.162 -0.018 -6.816 1.340 -1.424 -1.436 -0.463 D 172 170 3 173 3 0 0 66 125 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 69 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 72 - a - - - ML 174 173 3 176 3 1 1 67 127 -8.162 -0.018 -6.816 0.486 -0.925 -0.117 0.202 D 175 173 3 176 3 0 0 65 124 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 68 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 73 - c - - - ML 177 176 3 179 3 1 1 66 126 -8.162 -0.018 -6.816 -0.991 0.975 -1.819 0.320 D 178 176 3 179 3 0 0 64 123 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 67 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 74 - a - - - ML 180 179 3 182 3 1 1 65 125 -8.162 -0.018 -6.816 0.982 -0.582 -1.155 -0.140 D 181 179 3 182 3 0 0 63 122 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 66 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 75 - a - - - ML 183 182 3 185 3 1 1 64 124 -8.162 -0.018 -6.816 0.711 -0.451 -1.075 0.210 D 184 182 3 185 3 0 0 62 121 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 65 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 76 - u - - - ML 186 185 3 188 3 1 1 63 123 -8.162 -0.018 -6.816 0.134 -0.069 -1.139 0.580 D 187 185 3 188 3 0 0 61 120 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 64 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 77 - u - - - ML 189 188 3 191 3 1 1 62 122 -8.162 -0.018 -6.816 0.275 -0.875 -0.176 0.443 D 190 188 3 191 3 0 0 60 119 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 63 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 78 - U - - - ML 192 191 3 194 3 1 1 61 121 -8.162 -0.018 -6.816 -0.813 -1.094 -0.898 1.278 D 193 191 3 194 3 0 0 58 118 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 62 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 79 - U - - - ML 195 194 3 197 3 1 1 60 120 -8.162 -0.018 -6.816 -0.930 0.037 -1.699 1.098 D 196 194 3 197 3 0 0 57 117 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 61 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 80 - a - - - ML 198 197 3 200 3 1 1 59 119 -8.162 -0.018 -6.816 0.482 -0.190 -0.523 0.043 D 199 197 3 200 3 0 0 55 114 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 60 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 81 - u - - - ML 201 200 3 203 3 1 1 58 118 -2.021 -0.425 -6.816 0.141 -0.386 -1.156 0.751 D 202 200 3 203 3 0 0 48 107 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 62 121 -0.445 -1.979 -6.410 0.000 0.000 0.000 0.000 [ MATL 63 ] 91 - u - - - ML 204 203 3 206 3 1 1 22 41 -8.162 -0.018 -6.816 -0.120 -0.407 -0.669 0.763 D 205 203 3 206 3 0 0 21 40 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 92 - U - - - ML 207 206 3 209 3 1 1 21 40 -8.162 -0.018 -6.816 -0.385 -1.091 -1.565 1.279 D 208 206 3 209 3 0 0 20 39 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 93 - U - - - ML 210 209 3 212 3 1 1 20 39 -8.162 -0.018 -6.816 -0.601 -1.011 -0.357 1.045 D 211 209 3 212 3 0 0 19 38 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 94 - a - - - ML 213 212 3 215 3 1 1 19 37 -8.162 -0.018 -6.816 0.516 -0.942 -0.090 0.149 D 214 212 3 215 3 0 0 18 37 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 95 - C - - - ML 216 215 3 218 3 1 1 17 36 -8.162 -0.018 -6.816 -2.226 1.732 -3.057 -1.543 D 217 215 3 218 3 0 0 17 36 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 96 - U - - - ML 219 218 3 221 3 1 1 16 35 -8.162 -0.018 -6.816 -1.858 -1.790 -2.608 1.710 D 220 218 3 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 97 - G - - - ML 222 221 3 224 3 1 1 15 33 -8.162 -0.018 -6.816 -1.997 -3.277 1.803 -2.664 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 98 - A - - - ML 225 224 3 227 3 1 1 13 31 -8.162 -0.018 -6.816 1.792 -2.772 -2.364 -2.355 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 99 - G - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 -1.997 -3.277 1.803 -2.664 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoR53Y ACC RF01279 DESC Small nucleolar RNA snoR53Y LENG 76 MAXL 186 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 02:01:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01279/CM NSEQ 7 EFFN 2.744629 CKSUM 4188739905 STATS LOCAL MSV -9.3957 0.71871 STATS LOCAL VITERBI -9.5360 0.71871 STATS LOCAL FORWARD -3.3294 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27071 1.57780 1.54827 1.20289 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 0.00000 * 1 1.58367 2.75167 0.41764 2.62611 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 2 3.17984 2.06588 2.95616 0.24887 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 3 3.18242 2.06608 2.95738 0.24862 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 4 3.38426 0.19849 3.18322 2.25684 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 5 3.38410 0.19851 3.18314 2.25681 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 6 3.07125 0.16124 3.64630 2.57096 6 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 7 0.82417 2.10606 2.21893 1.10576 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 8 0.75948 2.52891 1.09658 2.13428 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 9 2.78557 2.71999 3.30946 0.17925 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 10 2.88877 3.79108 0.11965 3.36534 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 11 0.12686 3.42499 3.13122 3.14820 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 12 2.78557 2.71999 3.30946 0.17925 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 13 2.88877 3.79108 0.11965 3.36534 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 14 1.65705 1.76337 1.06552 1.22661 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.12505 2.30020 4.05675 0.81520 0.58439 1.09861 0.40547 15 2.78557 2.71999 3.30946 0.17925 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.36209 1.25010 4.05675 1.87360 0.16673 1.09861 0.40547 16 0.39237 2.49105 2.48678 1.84171 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 17 1.33206 1.63715 2.22751 0.83532 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24613 1.60508 4.05675 1.37044 0.29302 1.09861 0.40547 18 1.43889 1.46697 1.80187 1.00186 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 19 0.39981 2.47835 2.47729 1.82200 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 20 0.12686 3.42499 3.13122 3.14820 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 21 3.07125 0.16124 3.64630 2.57096 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 22 3.07125 0.16124 3.64630 2.57096 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 23 0.12686 3.42499 3.13122 3.14820 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 24 2.78557 2.71999 3.30946 0.17925 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 25 2.88877 3.79108 0.11965 3.36534 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 26 3.07125 0.16124 3.64630 2.57096 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 27 2.78557 2.71999 3.30946 0.17925 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 28 0.12686 3.42499 3.13122 3.14820 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 29 0.12686 3.42499 3.13122 3.14820 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 30 2.78557 2.71999 3.30946 0.17925 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 31 1.22387 2.09094 1.17568 1.29562 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 32 3.07125 0.16124 3.64630 2.57096 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 33 2.78557 2.71999 3.30946 0.17925 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 34 2.88877 3.79108 0.11965 3.36534 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 35 0.12686 3.42499 3.13122 3.14820 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 36 2.78557 2.71999 3.30946 0.17925 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 37 1.66751 1.23791 1.57646 1.15648 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.34393 4.05675 1.29565 1.46634 0.26236 1.09861 0.40547 38 0.23745 2.85279 2.61552 2.51891 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17788 1.96834 3.76048 0.81089 0.58782 0.11907 2.18702 39 2.22310 1.74553 2.74488 0.42630 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 40 1.50293 1.19220 2.28843 0.98740 60 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 41 1.75124 1.44012 1.89690 0.82210 61 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 42 1.43034 2.02678 1.46210 0.92315 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 43 1.19306 2.20947 0.97887 1.55488 63 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 44 2.78557 2.71999 3.30946 0.17925 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 45 2.09659 2.69659 0.41795 1.88854 65 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 46 0.12686 3.42499 3.13122 3.14820 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 47 2.14160 0.66873 2.72401 1.18888 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 48 1.43933 1.42712 1.81264 1.02251 68 u - - _ 1.38629 1.38629 1.38629 1.38629 0.25372 4.05675 1.57607 1.46634 0.26236 1.09861 0.40547 49 2.46811 3.31171 0.19476 2.88659 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04364 3.84667 3.84667 1.46634 0.26236 2.63544 0.07439 50 0.19763 3.01710 2.76329 2.69866 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04364 3.84667 3.84667 1.46634 0.26236 0.15476 1.94229 51 0.43654 2.42053 2.43397 1.73066 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 52 1.04413 2.05043 1.46231 1.24611 72 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 53 2.13250 0.68372 2.71391 1.16975 73 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 54 0.68787 1.79829 2.22228 1.49874 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 55 0.88075 1.70391 2.15827 1.24469 75 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 56 1.29428 1.42759 2.20152 0.97981 76 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 57 1.19450 2.01552 1.50368 1.07417 77 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 58 2.00528 2.19424 2.03029 0.47379 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 59 2.08614 1.35419 2.62307 0.60679 79 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 60 1.04671 1.51302 1.75362 1.36446 80 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 61 1.28924 1.65901 2.21351 0.85596 81 u - - _ 1.38629 1.38629 1.38629 1.38629 0.35363 1.27096 4.05675 1.76480 0.18780 1.09861 0.40547 62 1.47837 1.67399 1.85472 0.84864 91 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 63 1.67858 2.19155 2.52773 0.47517 92 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 64 1.84443 2.12727 1.63488 0.63914 93 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 65 1.02274 2.06224 1.44299 1.28373 94 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 66 3.07125 0.16124 3.64630 2.57096 95 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 67 2.78557 2.71999 3.30946 0.17925 96 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 68 2.88877 3.79108 0.11965 3.36534 97 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 69 0.12686 3.42499 3.13122 3.14820 98 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 70 2.88877 3.79108 0.11965 3.36534 99 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 71 2.53581 3.35093 0.17104 3.14739 100 G - - > 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 72 2.53658 3.35205 0.17086 3.14870 101 G - - > 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 73 0.28139 3.14772 1.90318 2.93328 102 A - - > 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 74 0.28113 3.14932 1.90339 2.93513 103 A - - > 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 75 2.87293 0.47522 2.57350 1.40467 104 C - - > 1.38629 1.38629 1.38629 1.38629 0.03522 4.05675 4.05675 1.46634 0.26236 1.09861 0.40547 76 0.86808 1.71628 2.16040 1.25446 105 a - - : 1.38629 1.38629 1.38629 1.38629 0.01777 4.03929 * 1.46634 0.26236 0.00000 * //