INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD109A ACC RF01278 DESC Small nucleolar RNA SNORD109A STATES 205 NODES 64 CLEN 67 W 103 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:10:39 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.054199 CKSUM 569964703 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.40 NC 34.60 EFP7GF -8.7560 0.71884 ECMLC 0.66868 -5.63258 3.07859 1600000 406390 0.002953 ECMGC 0.39148 -18.72437 -4.15872 1600000 119812 0.003339 ECMLI 0.65054 -3.90758 4.68981 1600000 322235 0.003724 ECMGI 0.43033 -13.09557 -0.69212 1600000 83204 0.004807 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 103 152 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 IL 1 1 2 1 6 1 22 105 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 22 105 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 74 G C - - MP 3 2 3 7 6 2 26 104 152 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -3.671 -2.628 -3.683 0.792 -4.061 -4.113 0.267 -4.106 -3.731 3.289 -4.100 -0.419 -0.032 -1.102 -1.646 -2.704 ML 4 2 3 7 6 1 20 102 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 101 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 15 98 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 21 103 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 22 103 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 73 G C - - MP 9 8 6 13 6 2 24 102 150 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.837 -3.139 -4.946 0.136 -5.367 -4.731 -0.708 -5.195 -4.390 3.660 -4.720 -0.842 -1.090 -4.530 -2.750 -3.821 ML 10 8 6 13 6 1 19 100 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 18 99 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 14 96 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 21 101 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 21 101 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 72 A U - - MP 15 14 6 19 6 2 23 100 148 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -3.491 -2.533 -3.581 3.060 -4.162 -4.954 0.081 -3.745 -3.462 1.418 -4.022 0.890 -0.180 -4.051 -1.815 -2.424 ML 16 14 6 19 6 1 18 98 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 17 97 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 14 94 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 20 99 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 20 99 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 71 u g - - MP 21 20 6 25 6 2 21 98 146 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -3.875 -3.869 -3.667 -0.226 -2.523 -4.145 1.759 -3.275 -3.710 -0.013 -4.044 -1.958 1.563 -3.981 2.731 -2.597 ML 22 20 6 25 6 1 17 96 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 16 96 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 13 93 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 19 97 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 19 97 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 70 C G - - MP 27 26 6 31 4 2 19 96 144 -6.998 -7.205 -0.051 -5.619 -4.655 -4.571 -4.327 -0.793 -3.022 -4.725 3.582 -3.843 -4.380 -0.568 -4.630 -2.519 0.481 -4.717 -0.731 -3.216 ML 28 26 6 31 4 1 16 95 143 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 14 94 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 13 93 141 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 18 96 144 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 17 95 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 33 32 6 35 3 1 17 94 142 -8.011 -0.020 -6.665 0.491 -1.497 0.771 -0.906 D 34 32 6 35 3 0 12 91 140 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 17 94 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 36 35 3 38 3 1 17 93 141 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 37 35 3 38 3 0 11 90 139 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 16 93 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 39 38 3 41 3 1 16 92 140 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 40 38 3 41 3 0 11 89 138 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 92 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 42 41 3 44 3 1 15 91 139 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 43 41 3 44 3 0 10 88 137 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 91 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 45 44 3 47 3 1 14 90 138 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 46 44 3 47 3 0 9 87 136 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 90 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 48 47 3 50 3 1 13 89 137 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 49 47 3 50 3 0 9 86 135 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 13 89 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 51 50 3 53 3 1 12 88 136 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 52 50 3 53 3 0 8 85 134 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 12 88 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 54 53 3 56 3 1 11 87 135 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 55 53 3 56 3 0 7 84 133 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 11 87 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 57 56 3 59 3 1 11 86 134 -8.011 -0.020 -6.665 -0.123 -1.283 0.941 -0.413 D 58 56 3 59 3 0 6 83 132 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 86 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 60 59 3 62 3 1 10 85 133 -8.011 -0.020 -6.665 0.555 0.365 -1.159 -0.331 D 61 59 3 62 3 0 6 83 131 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 85 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 63 62 3 65 3 1 9 84 132 -8.011 -0.187 -3.085 1.739 -2.466 -2.089 -2.018 D 64 62 3 65 3 0 5 82 130 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 9 84 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 66 65 3 68 3 1 9 83 131 -7.846 -0.022 -6.500 0.262 -0.351 -0.977 0.594 D 67 65 3 68 3 0 4 81 130 -7.197 -0.598 -1.588 IL 68 68 3 68 3 1 8 83 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 69 68 3 71 3 1 9 82 130 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 70 68 3 71 3 0 2 80 128 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 82 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 72 71 3 74 3 1 8 81 129 -8.011 -0.020 -6.665 1.324 -0.883 -1.323 -0.851 D 73 71 3 74 3 0 2 79 127 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 81 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 75 74 3 77 3 1 7 80 128 -8.011 -0.020 -6.665 -0.211 -0.245 -1.224 0.899 D 76 74 3 77 3 0 1 78 126 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 6 80 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 78 77 3 80 3 1 7 79 127 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 79 77 3 80 3 0 0 77 125 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 5 79 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 81 80 3 83 3 1 6 78 126 -8.011 -0.020 -6.665 -0.397 -1.987 1.383 -1.397 D 82 80 3 83 3 0 0 76 124 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 4 78 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 84 83 3 86 3 1 5 77 125 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 85 83 3 86 3 0 0 75 123 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 77 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 87 86 3 89 3 1 5 76 124 -8.011 -0.020 -6.665 -1.855 1.654 -2.682 -1.246 D 88 86 3 89 3 0 0 74 122 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 76 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 90 89 3 92 3 1 4 75 123 -8.011 -0.020 -6.665 -0.974 -0.518 -1.714 1.315 D 91 89 3 92 3 0 0 73 121 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 3 75 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 93 92 3 95 3 1 4 74 122 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 94 92 3 95 3 0 0 72 120 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 74 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 96 95 3 98 3 1 3 73 121 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 97 95 3 98 3 0 0 71 119 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 73 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 99 98 3 101 3 1 3 72 120 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 100 98 3 101 3 0 0 70 118 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 72 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 102 101 3 104 3 1 2 71 119 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 103 101 3 104 3 0 0 69 117 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 71 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 105 104 3 107 3 1 2 70 118 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 106 104 3 107 3 0 0 68 116 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 70 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 108 107 3 110 3 1 2 69 117 -8.011 -0.020 -6.665 -0.815 -0.061 -1.570 1.095 D 109 107 3 110 3 0 0 67 115 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 70 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 111 110 3 113 3 1 1 68 116 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 112 110 3 113 3 0 0 66 114 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 69 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 114 113 3 116 3 1 1 67 115 -8.011 -0.020 -6.665 -0.810 1.155 -1.002 -0.507 D 115 113 3 116 3 0 0 65 113 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 68 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 117 116 3 119 3 1 1 66 114 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 118 116 3 119 3 0 0 64 112 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 67 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 120 119 3 122 3 1 1 65 113 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 121 119 3 122 3 0 0 63 111 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 66 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 123 122 3 125 3 1 1 64 112 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 124 122 3 125 3 0 0 62 110 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 65 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 126 125 3 128 3 1 1 63 111 -8.011 -0.020 -6.665 -0.397 -1.987 1.383 -1.397 D 127 125 3 128 3 0 0 61 109 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 64 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - g - - - ML 129 128 3 131 3 1 1 62 110 -8.011 -0.020 -6.665 0.063 -1.150 0.738 -0.258 D 130 128 3 131 3 0 0 59 108 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 63 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 132 131 3 134 3 1 1 61 109 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 133 131 3 134 3 0 0 58 107 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 62 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 135 134 3 137 3 1 1 60 108 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 136 134 3 137 3 0 0 56 105 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 60 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 138 137 3 140 3 1 1 59 107 -3.160 -0.187 -6.665 -1.855 1.654 -2.682 -1.246 D 139 137 3 140 3 0 0 52 101 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 64 112 -0.549 -1.754 -5.634 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - u - - - ML 141 140 3 143 3 1 1 36 55 -8.011 -0.020 -6.665 -0.091 -0.818 -0.448 0.817 D 142 140 3 143 3 0 0 34 54 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - C - - - ML 144 143 3 146 3 1 1 34 54 -8.011 -0.020 -6.665 -0.446 1.170 -1.662 -0.516 D 145 143 3 146 3 0 0 33 53 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - - - ML 147 146 3 149 3 1 1 33 53 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 148 146 3 149 3 0 0 32 51 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - u - - - ML 150 149 3 152 3 1 1 32 51 -8.011 -0.020 -6.665 -0.773 0.119 -1.537 0.989 D 151 149 3 152 3 0 0 31 50 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 53 - U - - - ML 153 152 3 155 3 1 1 31 50 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 154 152 3 155 3 0 0 30 49 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 54 - g - - - ML 156 155 3 158 3 1 1 30 49 -8.011 -0.020 -6.665 0.018 -0.130 0.337 -0.303 D 157 155 3 158 3 0 0 29 48 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 55 - C - - - ML 159 158 3 161 3 1 1 29 48 -8.011 -0.020 -6.665 -1.171 1.303 -1.998 -0.256 D 160 158 3 161 3 0 0 28 47 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - A - - - ML 162 161 3 164 3 1 1 28 47 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 163 161 3 164 3 0 0 27 46 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - G - - - ML 165 164 3 167 3 1 1 27 46 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 166 164 3 167 3 0 0 26 45 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - A - - - ML 168 167 3 170 3 1 1 26 45 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 169 167 3 170 3 0 0 25 44 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 171 170 3 173 3 1 1 25 43 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 172 170 3 173 3 0 0 24 43 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - G - - - ML 174 173 3 176 3 1 1 23 42 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 175 173 3 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - U - - - ML 177 176 3 179 3 1 1 22 41 -8.011 -0.020 -6.665 -0.688 -0.976 -0.865 1.215 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - - - ML 180 179 3 182 3 1 1 21 40 -8.011 -0.020 -6.665 -1.855 1.654 -2.682 -1.246 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - A - - - ML 183 182 3 185 3 1 1 20 39 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - A - - - ML 186 185 3 188 3 1 1 19 37 -8.011 -0.020 -6.665 1.739 -2.466 -2.089 -2.018 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 190 188 3 191 3 0 0 17 36 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - C - - - ML 192 191 3 194 3 1 1 16 35 -8.011 -0.020 -6.665 -1.855 1.654 -2.682 -1.246 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - U - - - ML 195 194 3 197 3 1 1 15 33 -8.011 -0.020 -6.665 -1.573 -1.554 -2.311 1.642 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.011 -0.020 -6.665 -1.680 -2.916 1.745 -2.303 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.739 -2.466 -2.089 -2.018 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD109A ACC RF01278 DESC Small nucleolar RNA SNORD109A LENG 67 MAXL 168 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:10:39 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 2.231934 CKSUM 569964703 STATS LOCAL MSV -8.4179 0.71884 STATS LOCAL VITERBI -9.0742 0.71884 STATS LOCAL FORWARD -3.6832 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22561 1.67816 1.28709 1.41210 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 0.00000 * 1 2.08604 2.51520 0.38692 2.15564 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 2 2.56252 3.19849 0.17559 3.14413 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 3 0.57690 2.64911 1.25630 2.48957 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 4 2.74642 1.49762 2.51769 0.45960 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 5 3.14697 0.25333 2.91222 2.06789 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 6 1.04206 2.46634 0.83301 2.05856 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 7 0.16421 3.18586 2.91519 2.88424 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 8 2.56000 2.53250 3.07531 0.22682 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 9 2.64511 3.51526 0.15806 3.09078 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 10 0.16421 3.18586 2.91519 2.88424 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 11 2.56000 2.53250 3.07531 0.22682 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 12 2.64511 3.51526 0.15806 3.09078 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 13 0.16421 3.18586 2.91519 2.88424 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 14 1.48738 2.30685 0.71253 1.69251 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 15 0.99348 1.11659 2.22072 1.64099 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 16 0.16421 3.18586 2.91519 2.88424 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.16996 3.93085 1.99017 1.46634 0.26236 1.09861 0.40547 17 1.20337 1.63189 2.08027 0.96926 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04548 3.80637 3.80637 1.46634 0.26236 0.25248 1.50001 18 0.16421 3.18586 2.91519 2.88424 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 19 0.44945 2.01287 2.34518 2.02053 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 20 1.54488 1.55714 2.26062 0.75154 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 21 2.56000 2.53250 3.07532 0.22682 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 22 1.68825 2.82371 0.40534 2.41890 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 23 2.56000 2.53250 3.07532 0.22682 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 24 2.78151 0.21492 3.35684 2.33711 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 25 2.11006 1.75989 2.62571 0.45521 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 26 2.64511 3.51526 0.15806 3.09078 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 27 0.16421 3.18586 2.91519 2.88424 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 28 2.64511 3.51526 0.15806 3.09078 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 29 2.64511 3.51526 0.15806 3.09078 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 30 0.16421 3.18586 2.91519 2.88424 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 31 1.99152 1.42634 2.51813 0.61117 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 32 2.64511 3.51526 0.15806 3.09078 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 33 2.00315 0.55293 2.10770 1.78192 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 34 2.56000 2.53250 3.07532 0.22682 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 35 2.64511 3.51526 0.15806 3.09078 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 36 0.16421 3.18586 2.91519 2.88424 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 37 1.68825 2.82371 0.40534 2.41890 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 38 1.35185 2.20964 0.85480 1.57923 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 39 2.64511 3.51526 0.15806 3.09078 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 40 0.16421 3.18586 2.91519 2.88424 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 41 2.78151 0.21492 3.35684 2.33711 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.16996 1.99017 3.93085 1.91046 0.16018 1.09861 0.40547 42 1.45829 1.97385 1.69846 0.80860 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 43 1.72605 0.54555 2.59613 1.78421 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 44 0.16421 3.18586 2.91519 2.88424 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 45 1.96047 1.29592 2.49301 0.68736 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 46 2.56000 2.53250 3.07531 0.22682 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 47 1.38472 1.47053 1.13475 1.61797 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 48 2.26079 0.45644 2.83921 1.59099 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 49 0.16421 3.18586 2.91519 2.88424 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 50 2.64511 3.51526 0.15806 3.09078 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 51 0.16421 3.18586 2.91519 2.88424 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 52 2.56000 2.53250 3.07532 0.22682 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 53 2.64511 3.51526 0.15806 3.09078 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 54 1.90282 2.09823 2.00464 0.52177 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 55 2.78151 0.21492 3.35684 2.33711 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 56 0.16421 3.18586 2.91519 2.88424 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 57 0.16421 3.18586 2.91519 2.88424 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 58 2.56000 2.53250 3.07531 0.22682 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 59 2.78151 0.21492 3.35684 2.33711 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 60 2.56000 2.53250 3.07532 0.22682 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 61 2.64511 3.51526 0.15806 3.09078 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 62 0.16421 3.18586 2.91519 2.88424 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 63 2.34644 3.08055 0.21870 2.90410 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 64 1.59438 2.67911 0.43564 2.50730 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 65 2.71205 1.75102 2.45218 0.39468 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 66 3.36547 0.20739 3.03385 2.25738 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93085 3.93085 1.46634 0.26236 1.09861 0.40547 67 2.65399 0.40066 2.33197 1.81615 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.02022 3.91103 * 1.46634 0.26236 0.00000 * //