INFERNAL1/a [1.1.5 | Sep 2023] NAME snoU54 ACC RF01277 DESC Small nucleolar RNA U54 STATES 205 NODES 66 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 21:54:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01277/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 3.722168 CKSUM 289634422 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -10.9526 0.71886 ECMLC 0.65298 -6.36076 2.66624 1600000 435632 0.002755 ECMGC 0.38426 -19.16732 -4.22094 1600000 124834 0.003204 ECMLI 0.63316 -4.38594 4.24857 1600000 284102 0.004224 ECMGI 0.43229 -13.41133 -0.90205 1600000 89245 0.004482 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -7.542 -7.749 -0.035 -6.163 IL 1 1 2 1 4 1 27 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 26 85 105 -8.883 -0.075 -4.357 -1.839 -1.238 -2.587 1.646 D 4 2 3 5 3 0 23 84 104 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 26 86 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 77 - a - - MR 6 5 3 8 3 1 26 84 104 -8.821 -0.013 -7.138 0.815 -1.110 -0.438 0.056 D 7 5 3 8 3 0 21 82 103 -6.979 -1.290 -0.778 IR 8 8 3 8 3 1 25 85 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - C - - MR 9 8 3 11 3 1 25 83 103 -8.855 -0.013 -7.173 -0.966 1.166 -2.021 -0.003 D 10 8 3 11 3 0 19 81 102 -6.685 -1.121 -0.915 IR 11 11 3 11 3 1 24 84 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - g - - MR 12 11 3 14 3 1 25 82 102 -8.883 -0.013 -7.200 0.195 -1.609 0.951 -0.752 D 13 11 3 14 3 0 18 80 101 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 23 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 74 - A - - MR 15 14 3 17 5 1 24 81 101 -7.592 -0.028 -7.407 -7.619 -8.511 1.136 -0.928 -0.445 -0.884 D 16 14 3 17 5 0 17 80 100 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 21 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 73 G C - - MP 18 17 3 22 6 2 23 80 100 -9.364 -9.303 -0.018 -8.079 -8.359 -8.754 -5.813 -3.621 -6.102 -0.560 -6.712 -5.089 -1.813 -6.358 -4.960 3.816 -5.236 -1.381 -2.177 -5.149 -3.923 -4.965 ML 19 17 3 22 6 1 19 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 18 78 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 14 76 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 20 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 20 79 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 72 G C - - MP 24 23 6 28 6 2 22 78 98 -9.364 -9.303 -0.018 -8.079 -8.359 -8.754 -5.813 -3.621 -6.102 -0.560 -6.712 -5.089 -1.813 -6.358 -4.960 3.816 -5.236 -1.381 -2.177 -5.149 -3.923 -4.965 ML 25 23 6 28 6 1 18 77 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 16 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 14 75 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 19 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 19 77 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 71 C G - - MP 30 29 6 34 4 2 20 76 96 -7.542 -7.749 -0.035 -6.163 -5.795 -5.806 -5.259 -1.974 -3.761 -5.505 3.806 -4.699 -5.380 -1.859 -5.476 -3.804 -0.410 -5.777 -1.529 -4.190 ML 31 29 6 34 4 1 17 76 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 15 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 13 75 95 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 18 77 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 18 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 5 - g - - - ML 36 35 6 38 3 1 18 74 94 -8.523 -0.014 -7.177 -0.141 -1.431 0.924 -0.278 D 37 35 6 38 3 0 13 72 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 6 - A - - - ML 39 38 3 41 3 1 17 73 93 -8.523 -0.014 -7.177 1.476 -1.435 -1.122 -1.361 D 40 38 3 41 3 0 12 71 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - U - - - ML 42 41 3 44 3 1 16 72 92 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 43 41 3 44 3 0 11 70 91 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - G - - - ML 45 44 3 47 3 1 16 71 91 -8.523 -0.014 -7.177 -2.699 -4.058 1.885 -3.429 D 46 44 3 47 3 0 10 69 90 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 15 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - A - - - ML 48 47 3 50 3 1 15 70 90 -8.523 -0.014 -7.177 1.877 -3.489 -3.017 -3.145 D 49 47 3 50 3 0 10 68 89 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 14 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - G - - - ML 51 50 3 53 3 1 14 69 89 -8.523 -0.014 -7.177 -0.970 -2.411 1.571 -1.594 D 52 50 3 53 3 0 9 67 88 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 54 53 3 56 3 1 13 68 88 -8.523 -0.014 -7.177 -2.699 -4.058 1.885 -3.429 D 55 53 3 56 3 0 8 66 87 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 57 56 3 59 3 1 12 67 87 -8.523 -0.048 -5.043 1.877 -3.489 -3.017 -3.145 D 58 56 3 59 3 0 7 65 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 12 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - g - - - ML 60 59 3 62 3 1 11 66 86 -4.153 -0.094 -7.143 -0.320 -1.005 0.784 -0.031 D 61 59 3 62 3 0 7 64 84 -6.573 -2.086 -0.407 IL 62 62 3 62 3 1 11 66 87 -1.679 -0.645 -4.379 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - A - - - ML 63 62 3 65 3 1 11 64 85 -8.489 -0.014 -7.143 1.506 -1.905 -1.071 -1.262 D 64 62 3 65 3 0 6 63 83 -6.573 -1.067 -0.965 IL 65 65 3 65 3 1 10 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - u - - - ML 66 65 3 68 3 1 10 63 84 -5.621 -0.065 -5.401 0.292 -0.466 -0.501 0.428 D 67 65 3 68 3 0 5 62 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 9 65 85 -1.526 -0.739 -4.226 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - - - ML 69 68 3 71 3 1 9 62 82 -8.498 -0.014 -7.152 1.485 -1.526 -1.321 -1.141 D 70 68 3 71 3 0 4 60 81 -6.471 -1.984 -0.443 IL 71 71 3 71 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - a - - - ML 72 71 3 74 3 1 8 61 81 -8.498 -0.045 -5.172 0.703 0.092 -1.310 -0.147 D 73 71 3 74 3 0 4 60 80 -6.471 -1.984 -0.443 IL 74 74 3 74 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - u - - - ML 75 74 3 77 3 1 8 60 80 -8.468 -0.015 -7.122 -0.534 0.326 -1.301 0.723 D 76 74 3 77 3 0 3 59 79 -6.764 -0.884 -1.156 IL 77 77 3 77 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 78 77 3 80 3 1 7 59 79 -8.523 -0.014 -7.177 -0.439 -0.470 -1.194 1.073 D 79 77 3 80 3 0 2 58 78 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - a - - - ML 81 80 3 83 3 1 6 58 78 -8.523 -0.014 -7.177 0.909 -1.289 -0.145 -0.306 D 82 80 3 83 3 0 1 57 77 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - c - - - ML 84 83 3 86 3 1 5 57 77 -8.523 -0.110 -3.820 -0.391 0.453 -0.974 0.443 D 85 83 3 86 3 0 1 56 76 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - u - - - ML 87 86 3 89 3 1 5 56 76 -8.428 -0.064 -4.617 -0.065 -0.700 -0.559 0.807 D 88 86 3 89 3 0 0 55 75 -7.077 -1.535 -0.627 IL 89 89 3 89 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - g - - - ML 90 89 3 92 3 1 4 55 75 -8.417 -0.015 -7.071 -0.145 -0.670 0.591 -0.058 D 91 89 3 92 3 0 0 54 74 -7.146 -0.625 -1.537 IL 92 92 3 92 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - u - - - ML 93 92 3 95 3 1 4 54 74 -8.523 -0.014 -7.177 -0.065 -0.850 -1.000 0.992 D 94 92 3 95 3 0 0 52 73 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - - - ML 96 95 3 98 3 1 3 53 73 -4.276 -0.087 -7.177 -0.296 -1.659 1.315 -1.397 D 97 95 3 98 3 0 0 51 71 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 54 74 -1.665 -0.653 -4.365 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - U - - - ML 99 98 3 101 3 1 2 52 72 -8.523 -0.054 -4.877 -0.634 -0.773 -1.784 1.310 D 100 98 3 101 3 0 0 50 70 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - U - - - ML 102 101 3 104 3 1 3 51 71 -8.483 -0.014 -7.137 -1.284 -1.005 -1.718 1.479 D 103 101 3 104 3 0 0 49 69 -6.628 -2.141 -0.390 IL 104 104 3 104 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - G - - - ML 105 104 3 107 3 1 2 50 70 -8.483 -0.014 -7.137 -1.738 -3.380 1.791 -2.808 D 106 104 3 107 3 0 0 48 68 -6.628 -1.010 -1.019 IL 107 107 3 107 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - A - - - ML 108 107 3 110 3 1 2 49 69 -8.523 -0.014 -7.177 1.877 -3.489 -3.017 -3.145 D 109 107 3 110 3 0 0 47 67 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 50 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - a - - - ML 111 110 3 113 3 1 2 48 68 -8.523 -0.014 -7.177 0.992 -0.751 -0.663 -0.348 D 112 110 3 113 3 0 0 46 66 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 114 113 3 116 3 1 1 47 67 -8.523 -0.014 -7.177 -0.871 -0.488 -1.029 1.170 D 115 113 3 116 3 0 0 45 65 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 48 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - - - ML 117 116 3 119 3 1 1 45 65 -8.523 -0.014 -7.177 -0.374 -0.765 -1.034 1.105 D 118 116 3 119 3 0 0 44 64 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 120 119 3 122 3 1 1 44 64 -8.523 -0.014 -7.177 1.294 -1.507 -0.929 -0.578 D 121 119 3 122 3 0 0 43 63 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 46 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - c - - - ML 123 122 3 125 3 1 1 43 63 -4.334 -0.084 -7.177 -0.659 0.840 -1.757 0.357 D 124 122 3 125 3 0 0 42 62 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 44 64 -1.656 -0.658 -4.356 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - g - - - ML 126 125 3 128 3 1 1 42 62 -8.523 -0.014 -7.177 0.098 -0.596 0.737 -0.734 D 127 125 3 128 3 0 0 41 61 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 129 128 3 131 3 1 1 41 61 -8.523 -0.014 -7.177 0.024 -2.258 1.304 -1.710 D 130 128 3 131 3 0 0 40 60 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 132 131 3 134 3 1 1 40 60 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 133 131 3 134 3 0 0 39 59 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - G - - - ML 135 134 3 137 3 1 1 39 59 -8.523 -0.014 -7.177 -2.699 -4.058 1.885 -3.429 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 138 137 3 140 3 1 1 38 58 -8.523 -0.014 -7.177 1.877 -3.489 -3.017 -3.145 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 141 140 3 143 3 1 1 37 57 -8.523 -0.014 -7.177 -1.453 -1.565 -1.601 1.569 D 142 140 3 143 3 0 0 35 55 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - a - - - ML 144 143 3 146 3 1 1 36 56 -5.562 -0.041 -7.177 0.840 -0.621 -1.025 0.096 D 145 143 3 146 3 0 0 34 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 37 57 -1.530 -0.736 -4.230 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - g - - - ML 147 146 3 149 3 1 1 35 55 -8.523 -0.014 -7.177 0.130 -1.285 0.663 -0.133 D 148 146 3 149 3 0 0 33 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 150 149 3 152 3 1 1 34 53 -5.214 -0.050 -7.177 -0.619 -0.846 -1.128 1.223 D 151 149 3 152 3 0 0 32 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 56 -1.370 -0.825 -4.363 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 153 152 3 155 3 1 1 32 51 -3.416 -0.153 -7.177 -1.656 -0.849 -2.410 1.555 D 154 152 3 155 3 0 0 30 49 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 33 52 -1.833 -0.565 -4.533 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - U - - - ML 156 155 3 158 3 1 1 31 50 -5.196 -0.050 -7.177 -1.105 -0.916 -1.284 1.375 D 157 155 3 158 3 0 0 29 48 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 33 53 -1.369 -0.825 -4.366 0.000 0.000 0.000 0.000 [ MATL 50 ] 56 - U - - - ML 159 158 3 161 3 1 1 29 47 -8.523 -0.014 -7.177 -0.705 -0.517 -1.771 1.260 D 160 158 3 161 3 0 0 28 47 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 57 - A - - - ML 162 161 3 164 3 1 1 27 46 -8.523 -0.014 -7.177 1.668 -2.490 -1.285 -2.099 D 163 161 3 164 3 0 0 27 46 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 58 - U - - - ML 165 164 3 167 3 1 1 26 45 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 59 - A - - - ML 168 167 3 170 3 1 1 25 44 -8.523 -0.014 -7.177 1.877 -3.489 -3.017 -3.145 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 60 - C - - - ML 171 170 3 173 3 1 1 24 43 -8.523 -0.014 -7.177 -3.079 1.849 -3.879 -2.248 D 172 170 3 173 3 0 0 23 42 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - G - - - ML 174 173 3 176 3 1 1 23 42 -8.523 -0.014 -7.177 -2.699 -4.058 1.885 -3.429 D 175 173 3 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - C - - - ML 177 176 3 179 3 1 1 22 41 -8.523 -0.014 -7.177 -3.079 1.849 -3.879 -2.248 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 63 - U - - - ML 180 179 3 182 3 1 1 21 39 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 64 - A - - - ML 183 182 3 185 3 1 1 20 38 -8.523 -0.014 -7.177 1.877 -3.489 -3.017 -3.145 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 65 - U - - - ML 186 185 3 188 3 1 1 18 37 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 66 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.523 -0.014 -7.177 -3.079 1.849 -3.879 -2.248 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.523 -0.014 -7.177 -2.547 -2.368 -3.318 1.822 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 69 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.523 -0.014 -7.177 -2.699 -4.058 1.885 -3.429 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 70 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.877 -3.489 -3.017 -3.145 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoU54 ACC RF01277 DESC Small nucleolar RNA U54 LENG 67 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 21:54:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01277/CM NSEQ 28 EFFN 3.899902 CKSUM 289634422 STATS LOCAL MSV -7.9461 0.71886 STATS LOCAL VITERBI -8.6833 0.71886 STATS LOCAL FORWARD -3.5215 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29026 1.70609 1.39264 1.22143 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 0.00000 * 1 2.70409 2.26354 3.22287 0.23668 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 2 2.99778 3.84953 0.09846 3.79048 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 3 2.99870 3.85087 0.09834 3.79230 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 4 3.86111 0.12382 3.70942 2.64613 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 5 1.49212 2.40028 0.73444 1.58651 5 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 6 0.35468 2.39586 2.17766 2.36233 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 7 3.21032 3.07683 3.74564 0.11661 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 8 3.31285 4.26081 0.07518 3.82132 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 9 0.07979 3.86403 3.53260 3.63131 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 10 2.07786 3.08926 0.28979 2.51524 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 11 3.31285 4.26081 0.07518 3.82132 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 12 0.07979 3.86403 3.53260 3.63131 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05280 4.32130 3.26618 1.46634 0.26236 1.09861 0.40547 13 1.61997 2.09499 0.83098 1.41303 13 g - - _ 1.38629 1.38629 1.38629 1.38629 0.08782 2.65283 4.29611 0.35002 1.21966 1.58357 0.22972 14 0.33450 2.73501 2.13949 2.28579 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02762 4.29611 4.29611 1.46634 0.26236 0.52845 0.89042 15 1.18285 1.71229 1.73477 1.08855 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06513 3.44264 3.47146 0.69124 0.69506 1.09861 0.40547 16 0.34866 2.46108 2.32030 2.20020 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02742 4.30335 4.30335 1.46634 0.26236 1.46770 0.26195 17 0.89374 1.31673 2.31236 1.49683 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05031 4.30335 3.33711 1.46634 0.26236 1.46770 0.26195 18 1.76969 1.15261 2.30231 0.88243 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02804 4.28108 4.28108 1.46634 0.26236 0.40821 1.09315 19 1.69995 1.71650 2.22464 0.63581 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 20 0.75019 2.29765 1.48542 1.60534 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 21 1.66728 1.06350 2.06880 1.07981 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.09916 4.32130 2.51180 1.46634 0.26236 1.09861 0.40547 22 1.43428 1.87961 1.77430 0.82221 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06625 4.25105 2.99875 1.46634 0.26236 1.00605 0.45517 23 1.49485 1.85535 0.96637 1.43189 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02914 4.24341 4.24341 1.46634 0.26236 0.26325 1.46339 24 1.43403 1.98749 2.08673 0.69210 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 25 1.60192 2.55384 0.46402 2.38641 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.08175 2.73013 4.32130 0.36708 1.18011 1.09861 0.40547 26 1.84005 1.93373 2.65016 0.46850 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05696 4.32130 3.16813 1.46634 0.26236 1.09861 0.40547 27 2.31081 2.10068 2.60063 0.35067 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02773 4.29207 4.29207 1.46634 0.26236 1.64253 0.21504 28 2.62370 3.77935 0.13844 3.38385 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02773 4.29207 4.29207 1.46634 0.26236 0.48936 0.94938 29 0.07979 3.86403 3.53260 3.63131 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 30 0.69217 1.91175 1.85126 1.63656 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 31 2.01344 1.72999 2.10709 0.56635 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 32 1.65335 1.92663 2.11079 0.61283 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 33 0.48070 2.45318 2.04013 1.79807 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 34 1.85919 0.79286 2.63179 1.14036 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07941 2.76378 4.32130 0.37850 1.15484 1.09861 0.40547 35 1.32323 1.80116 0.86363 1.91740 39 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 36 1.37331 2.98870 0.47328 2.61152 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 37 3.21032 3.07683 3.74564 0.11661 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 38 3.31285 4.26081 0.07518 3.82132 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 39 0.07979 3.86403 3.53260 3.63131 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 40 2.43296 2.50478 2.51492 0.28814 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 41 0.79810 1.82200 2.10781 1.32197 45 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04725 3.41523 4.32130 0.67501 0.71162 1.09861 0.40547 42 1.29911 2.29505 0.91738 1.48323 47 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 43 1.82956 1.98537 2.17768 0.52953 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05371 3.24382 4.32130 0.93679 0.49739 1.09861 0.40547 44 2.57501 1.98627 3.09795 0.29908 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13145 2.20824 4.32130 0.22635 1.59671 1.09861 0.40547 45 2.18237 2.03641 2.28936 0.42251 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05410 3.23458 4.32130 0.93449 0.49888 1.09861 0.40547 46 1.89092 1.75084 2.64067 0.50397 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 47 0.22283 3.15333 2.28875 2.88869 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 48 3.21032 3.07683 3.74564 0.11661 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 49 0.07979 3.86403 3.53260 3.63131 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 50 3.58873 0.09786 4.13756 3.00313 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 51 3.31285 4.26081 0.07518 3.82132 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 52 3.58873 0.09786 4.13756 3.00313 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 53 3.21032 3.07683 3.74564 0.11661 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 54 0.07979 3.86403 3.53260 3.63131 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 55 3.21032 3.07683 3.74564 0.11661 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 56 3.21032 3.07683 3.74564 0.11661 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 57 3.58873 0.09786 4.13756 3.00313 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 58 3.21032 3.07683 3.74564 0.11661 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 59 3.31285 4.26081 0.07518 3.82132 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 60 0.07979 3.86403 3.53260 3.63131 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 61 2.93051 3.87831 0.10576 3.63819 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 62 3.97501 0.11779 3.71111 2.68990 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 63 3.98924 0.11710 3.71808 2.69246 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 64 0.59039 2.03645 1.69735 2.02322 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 65 1.25387 2.52595 0.71611 1.92436 75 g - - : 1.38629 1.38629 1.38629 1.38629 0.04873 4.32130 3.37319 1.46634 0.26236 1.09861 0.40547 66 2.07828 0.56663 2.82011 1.39506 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.05489 4.30008 3.22292 1.46634 0.26236 1.52188 0.24629 67 0.81590 2.17047 1.69202 1.34904 77 a - - : 1.38629 1.38629 1.38629 1.38629 0.01423 4.25942 * 1.46634 0.26236 0.00000 * //