# STOCKHOLM 1.0
#=GF ID snoU54
#=GF AC RF01277
#=GF DE Small nucleolar RNA U54
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 35.0
#=GF NC 34.9
#=GF TC 35.0
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.33 -Z 2958934 CM SEQDB
#=GF CL CL00008
#=GF DR URL; http://snoopy.med.miyazaki-u.ac.jp/view.cgi?id=HUM30058;
#=GF DR snoRNABase; U54;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 8674114
#=GF RT Site-specific ribose methylation of preribosomal RNA: a novel function for
#=GF RT small nucleolar RNAs.
#=GF RA Kiss-Laszlo Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T
#=GF RL Cell. 1996;85:1077-1088.
#=GF WK Small_nucleolar_RNA
#=GF SQ 28

X96653.1/1-67                UGGCGAUGAGGAG-GU-ACCUAUUGUG-UUGAGUAAC-GGUGAUA-AU--U-U--UAUACGCUAUUCUGAGCCGAUU
AANU01108424.1/10337-10271   UGGCGAUGAGGAG-GU-ACCUACUGUG-UUGAAUAAC-GGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAGUA
AAPY01773330.1/1468-1535     UGGCGAUGAGGAG-AUAACCUACUAUG-UUGAAUUAU-GGUGAUA-AU--U-U--UAUACGCUAUUCUGAGCCAGCU
AAQQ01210439.1/939-872       UGGCGAUGAGGAG-AU-ACCUACCGUG-UUGAAUUAU-GGUGAUAGUU--U-U--UAUACGCUAUUCUGAGCCAACU
AAHY01033119.1/946-1013      CGGCGAUGAGGAG-AU-ACCAACCGUA-UUGAGUUAU-AGUGAUA-UU--UCU--UAUACGCUAUUCUGAGCCGAUA
AANG01411219.1/1592-1526     UGGCGAUGAGGAG-AC-AAGAAGUGUG-UUGAGUUAU-GAUGAUC-GU--U-U--UAUACGCUAUUCUGAGCCAGCA
ABDC01369815.1/393-330       UGGCGAUGAGGAG-AU----UACUGUG-UUGAAUUAU-AGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAGCA
AAFC03081308.1/29388-29454   UGGCGGUGAGGAG-AG-AAUUGCUGUG-UUGACUUAC-GGUGAUC-GU--C-U--UAUACGCUAUUCUGAGCCCGAG
AAYZ01097424.1/2681-2617     UGGCGAUGAGGAA-AU-ACCUGUAUUG-A--AUGCAC-GGUGAUA-AC--U-U--CAUACGCUAUUCUGAGCCGGCA
AANN01785293.1/168-99        UGGCGAUGAGGAAAUU-AACUACUGUG-UUGAAUCAC-GAUGAUA-GUUGU-G--UAUACGCUAUUCUGAGCCAGCG
DQ915206.1/172-236           UGGCGCUGAGGAG-AG-AAUUGC--UG-UUGAACUAC-AGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAGCA
AAIY01264552.1/146-213       UGGCAAUGAGGAG-AG-AUCUAU-GUG-UUGAAUGAU-GGUGAUG-UU--U-UAUUGUACGCUAUUCUGAGCCAGCA
AAPN01137617.1/5310-5243     UGGCUAUGAAGAU-AA-AAUCAUGCAGAUUGAAGUUC-CGUGAUU-GU--U-U--UAUACGCUAUUCUGAGCCAACG
AAFR03011690.1/58281-58348   UGGCAAUGAUGAUGAA-AUUUAAGCAG-UUGAAUUUC-GGUGAUU-GU--C-U--CAUACGCUAUUCUGAGCCAGCU
CAAK05058725.1/14911-14843   UGGCUAUGAGGAU-AA-AAUUGUAUGA-ACGACUUAAACAUGAGU-UA--UAU--CAUACGCUAUUCUGAGCCCUUU
AAKN02044913.1/57316-57382   UGGCGAUGAGGAG-AC-UCCUAUUGUG-UUGAAUUAC-AAUGAUA-GG--U-U--UAUACGCUAUUCUGAGCCAGCA
AAWR02029913.1/50466-50532   UGGCGAUGAGGAG-AG-AAUUACUGUG-UUGAAUUAC-GGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAGCA
AC129839.5/222599-222666     CGGCGAUGAGGAG-AU-ACCUACUGUG-UUGAAUUAU-GGUGAUA-UU--UCU--UAUACGCUAUUCUGAGCCGAUA
JN899119.1/2-64              UGGCGCUGAGGAG-AG-AAUUGC--UG-UUGAACUAC-AGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAG--
EU094081.1/3-69              UGGCUAUGAAGAU-AA-AAUCAUGCAGAUUGAAGUUC-CGUGAUU-GU--U-U--UAUACGCUAUUCUGAGCCAAC-
AAWZ02021600.1/33004-33070   UGGCAAUGAGGAC-AA-AAAGUGUUAA-CUGAACUAC-CAUGAUU-AG--U-G--AAUACGCUAUUCUGAGCCAACA
AADN03002793.1/87922-87856   UGGCUAUGAGGAU-AA-ACUCUUAAAC-CUGAAUUGC-AGUGAUC-AU--U-U--UAUACGCUAUUCUGAGCCAACA
AAPE02009540.1/33397-33332   UGGCGAUGAGGAG-AC-GAUUGCU-CG-UUGAUCGGC-GGUGAUA-GU--U-C--UGUACGCUAUUCUGAGCCGGCG
AAEX03015802.1/155734-155668 UGGCGAUGAGGAG-AC-CAUUACUGUG-UUGAAUAAU-GAUGAUA-GU--U-C--UAUACGCUAUUCUGAGCCAGCA
AAQR03196802.1/212-278       UGGCGAUGAGGAG-AU-AUCUACUAUG-UGAAAUUAC-AGUGAUA-GU--U-U--UAUACGCUAUUCUGAGCCAGCA
AAGW02047266.1/23273-23338   UGGCGAUGAGGAG-AU-AC-AACUGUG-UUGAAUUAU-GGUGAUA-AC--U-U--AAUACGCUAUUCUGAGCCAGCU
AAGU03078707.1/79687-79751   UGGCAGUGAGGA---A-AAUCUAGGUG-UUGAAUUAU-GGUGAUA-GU--C-U--UAUACGCUAUUCUGAGCCAGCA
AB061842.1/1832-1898         UGGCGAUGAGGAG-GU-ACCUAUUGUG-UUGAGUAAC-GGUGAUA-AU--U-U--UAUACGCUAUUCUGAGCCAGCA
#=GC SS_cons                 :<<<_________.__.__________._________._______.__.._._.._______________>>>::::
#=GC RF                      UGGCgAUGAGGAg.Au.AauUacuguG.UUGAaUUAc.gGUGAUa.gU..U.U..UAUACGCUAUUCUGAGCCAgCa
//
