INFERNAL1/a [1.1.5 | Sep 2023] NAME sR53 ACC RF01276 DESC Small nucleolar RNA sR53 STATES 184 NODES 62 CLEN 60 W 140 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 23:12:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01276/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.833008 CKSUM 1740237199 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.70 NC 39.10 EFP7GF -9.0672 0.71892 ECMLC 0.75967 -9.17054 -0.38176 1600000 952319 0.001260 ECMGC 0.35136 -22.60241 -6.02418 1600000 135455 0.002953 ECMLI 0.60587 -9.36075 0.42598 1600000 451158 0.002660 ECMGI 0.39756 -13.73495 -0.38067 1600000 80866 0.004946 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 140 224 -7.277 -7.484 -0.042 -5.899 IL 1 1 2 1 4 1 21 142 226 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 142 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 20 140 224 -5.653 -0.058 -5.653 -0.965 0.017 0.945 -0.860 D 4 2 3 5 3 0 15 137 220 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 22 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 139 222 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 7 5 3 8 3 0 15 136 219 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 21 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 19 138 221 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 10 8 3 11 3 0 14 135 217 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 20 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 137 219 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 13 11 3 14 3 0 13 133 216 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 20 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 135 218 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 16 14 3 17 3 0 13 132 214 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 17 134 216 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 19 17 3 20 3 0 12 131 213 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 18 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 16 133 215 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 22 20 3 23 3 0 11 129 211 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 18 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 15 131 213 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 25 23 3 26 3 0 11 128 210 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 17 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 1 15 130 212 -5.653 -0.058 -5.653 -1.266 0.929 -1.449 0.393 D 28 26 3 29 3 0 10 127 208 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 16 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 14 129 210 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 31 29 3 32 3 0 10 125 207 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 16 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 14 127 209 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 34 32 3 35 3 0 9 124 205 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 15 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - a - - - ML 36 35 3 38 3 1 13 126 207 -5.653 -0.058 -5.653 0.767 -0.938 -0.953 0.333 D 37 35 3 38 3 0 8 123 204 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 14 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 12 124 206 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 40 38 3 41 3 0 8 121 202 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 14 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 12 123 204 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 43 41 3 44 3 0 7 120 201 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 13 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 11 122 203 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 46 44 3 47 3 0 7 118 199 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 13 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 11 120 201 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 49 47 3 50 3 0 6 117 198 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 12 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 10 119 200 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 52 50 3 53 3 0 5 116 196 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 11 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 9 118 198 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 55 53 3 56 3 0 5 114 195 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 11 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 9 116 197 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 58 56 3 59 3 0 4 113 193 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 10 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 8 115 195 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 61 59 3 62 3 0 4 112 192 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 10 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 8 114 194 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 64 62 3 65 3 0 3 110 190 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 9 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 7 112 192 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 67 65 3 68 3 0 3 109 188 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 8 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 6 111 190 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 70 68 3 71 3 0 2 107 187 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 8 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - u - - - ML 72 71 3 74 3 1 6 109 189 -5.653 -0.058 -5.653 -0.848 -0.965 0.230 0.815 D 73 71 3 74 3 0 2 106 185 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 7 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 5 108 187 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 76 74 3 77 3 0 1 105 184 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 4 107 186 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 79 77 3 80 3 0 1 103 182 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 3 105 184 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 82 80 3 83 3 0 1 102 181 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 4 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 2 104 182 -5.653 -0.388 -2.213 1.747 -2.391 -2.130 -2.152 D 85 83 3 86 3 0 0 101 180 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 5 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - u - - - ML 87 86 3 89 3 1 2 103 181 -5.339 -0.073 -5.339 -0.863 0.525 -1.017 0.601 D 88 86 3 89 3 0 0 101 179 -13.650 -0.244 -2.685 IL 89 89 3 89 3 1 4 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 2 101 179 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 91 89 3 92 3 0 0 98 176 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 93 92 3 95 3 1 2 100 178 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 94 92 3 95 3 0 0 96 174 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 3 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 96 95 3 98 3 1 2 98 176 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 97 95 3 98 3 0 0 95 172 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - a - - - ML 99 98 3 101 3 1 1 97 174 -5.653 -0.058 -5.653 0.780 -1.318 0.452 -0.962 D 100 98 3 101 3 0 0 93 171 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 1 95 173 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 103 101 3 104 3 0 0 92 169 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 94 171 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 106 104 3 107 3 0 0 90 167 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 1 92 169 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 109 107 3 110 3 0 0 89 166 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 2 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 1 91 168 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 112 110 3 113 3 0 0 88 164 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 114 113 3 116 3 1 1 89 166 -5.653 -0.388 -2.213 -1.858 -2.659 1.754 -2.377 D 115 113 3 116 3 0 0 87 163 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 1 88 164 -5.339 -0.073 -5.339 1.542 -1.646 -1.373 -1.384 D 118 116 3 119 3 0 0 86 162 -13.650 -0.244 -2.685 IL 119 119 3 119 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 1 86 162 -5.653 -0.058 -5.653 -1.825 -1.471 -1.992 1.635 D 121 119 3 122 3 0 0 83 158 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 123 122 3 125 3 1 1 85 161 -5.653 -0.058 -5.653 0.102 -1.560 1.107 -1.206 D 124 122 3 125 3 0 0 81 157 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - u - - - ML 126 125 3 128 3 1 1 83 159 -5.653 -0.058 -5.653 0.220 -0.923 -0.982 0.849 D 127 125 3 128 3 0 0 80 155 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 129 128 3 131 3 1 1 82 157 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 130 128 3 131 3 0 0 78 153 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 132 131 3 134 3 1 1 80 155 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 133 131 3 134 3 0 0 76 151 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 1 78 153 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 136 134 3 137 3 0 0 75 149 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - G - - - ML 138 137 3 140 3 1 1 77 151 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 139 137 3 140 3 0 0 73 147 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - C - - - ML 141 140 3 143 3 1 1 75 149 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 142 140 3 143 3 0 0 71 145 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 83 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 73 147 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 145 143 3 146 3 0 0 69 143 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 147 146 3 149 3 1 1 72 145 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 148 146 3 149 3 0 0 68 141 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 150 149 3 152 3 1 1 70 143 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 151 149 3 152 3 0 0 66 139 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 153 152 3 155 3 1 1 68 141 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 154 152 3 155 3 0 0 64 136 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 156 155 3 158 3 1 1 66 139 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 157 155 3 158 3 0 0 62 134 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 159 158 3 161 3 1 1 64 137 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 160 158 3 161 3 0 0 60 132 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - c - - - ML 162 161 3 164 3 1 1 62 134 -5.653 -0.058 -5.653 0.222 0.829 -1.153 -0.719 D 163 161 3 164 3 0 0 58 129 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - C - - - ML 165 164 3 167 3 1 1 60 132 -5.653 -0.058 -5.653 -2.085 1.674 -2.293 -1.439 D 166 164 3 167 3 0 0 55 126 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 58 129 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 169 167 3 170 3 0 0 52 123 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - G - - - ML 171 170 3 173 3 1 1 55 126 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 172 170 3 173 3 0 0 49 119 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 52 122 -5.653 -0.058 -5.653 1.747 -2.391 -2.130 -2.152 D 175 173 3 176 3 0 0 45 114 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 177 176 3 179 3 1 1 48 118 -5.653 -0.058 -5.653 -1.858 -2.659 1.754 -2.377 D 178 176 3 179 3 0 0 32 101 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -1.858 -2.659 1.754 -2.377 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR53 ACC RF01276 DESC Small nucleolar RNA sR53 LENG 60 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 23:12:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01276/CM NSEQ 3 EFFN 2.833008 CKSUM 1740237199 STATS LOCAL MSV -8.4402 0.71892 STATS LOCAL VITERBI -8.7095 0.71892 STATS LOCAL FORWARD -3.6098 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45304 1.62628 0.94899 1.70183 1.38629 1.38629 1.38629 1.38629 0.02399 5.04436 4.05919 0.39730 1.11515 0.00000 * 1 2.05529 1.37457 0.73131 1.98255 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 2 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 3 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 4 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 5 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 6 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 7 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 8 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 9 2.26385 0.74206 2.39077 1.11365 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 10 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 11 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 12 0.85439 2.03668 2.04692 1.15561 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 13 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 14 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 15 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 16 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 17 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 18 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 19 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 20 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 21 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 22 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 23 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 24 1.97400 2.05551 1.22718 0.82108 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 25 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 26 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 27 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 28 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.26864 3.91860 1.53381 1.46634 0.26236 1.09861 0.40547 29 1.98424 1.02232 2.09125 0.96963 - u - - : 1.38629 1.38629 1.38629 1.38629 0.05068 3.70064 3.70064 1.46634 0.26236 0.16908 1.86073 30 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 31 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 32 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 33 0.84553 2.29974 1.07271 2.05335 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 34 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 35 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 36 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 37 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 38 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.26864 3.91860 1.53381 1.46634 0.26236 1.09861 0.40547 39 0.31766 2.52703 2.33826 2.34590 - A - - : 1.38629 1.38629 1.38629 1.38629 0.05068 3.70064 3.70064 1.46634 0.26236 0.16908 1.86073 40 2.65137 2.40575 2.76704 0.25309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 41 1.31547 2.46782 0.61896 2.22215 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 42 1.23374 2.02581 2.06663 0.79784 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 43 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 44 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 45 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 46 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 47 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 48 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 49 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 50 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 51 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 52 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 53 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 54 1.23253 0.81156 2.18554 1.88478 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 55 2.83180 0.22578 2.97583 2.38387 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 56 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 57 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 58 0.17560 3.04370 2.86246 2.87770 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 59 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04055 3.91860 3.91860 1.46634 0.26236 1.09861 0.40547 60 2.67403 3.22929 0.17040 3.03425 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //