INFERNAL1/a [1.1.5 | Sep 2023] NAME sR22 ACC RF01275 DESC Small nucleolar RNA sR22 STATES 183 NODES 52 CLEN 58 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 20:51:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01275/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.006836 CKSUM 1607452680 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 76.90 NC 35.40 EFP7GF -8.9508 0.71924 ECMLC 0.66743 -6.38440 2.62533 1600000 490635 0.002446 ECMGC 0.42857 -17.04563 -4.41153 1600000 89868 0.004451 ECMLI 0.64233 -5.02532 3.94057 1600000 380451 0.003154 ECMGI 0.46110 -12.72545 -1.51911 1600000 70171 0.005700 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 95 -6.979 -7.186 -0.052 -5.600 IL 1 1 2 1 4 2 25 78 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 24 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 5 2 25 75 95 -7.119 -0.038 -6.934 -7.147 -8.038 0.314 -0.072 -0.465 0.113 D 4 2 3 5 5 0 19 73 93 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 23 75 95 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 59 C G - - MP 6 5 3 10 6 3 24 74 94 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.618 -4.530 -4.296 -0.756 -2.999 -4.699 3.572 -3.816 -4.348 -0.525 -4.601 -2.478 0.508 -4.683 -0.707 -3.185 ML 7 5 3 10 6 1 21 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 19 72 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 17 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 22 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 22 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 58 C G - - MP 12 11 6 16 4 2 23 72 92 -6.979 -7.186 -0.052 -5.600 -4.618 -4.530 -4.296 -0.756 -2.999 -4.699 3.572 -3.816 -4.348 -0.525 -4.601 -2.478 0.508 -4.683 -0.707 -3.185 ML 13 11 6 16 4 1 20 72 92 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 4 1 18 71 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 15 11 6 16 4 0 17 70 91 -4.568 -4.250 -2.265 -0.520 IL 16 16 5 16 4 1 21 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 17 17 6 17 3 1 21 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 18 17 6 20 3 1 21 69 89 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 19 17 6 20 3 0 16 68 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 21 20 3 23 3 1 21 68 88 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 22 20 3 23 3 0 15 67 87 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 20 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 24 23 3 26 3 1 20 67 87 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 25 23 3 26 3 0 15 66 86 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 19 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 27 26 3 29 3 1 19 66 86 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 28 26 3 29 3 0 14 65 85 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 18 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 30 29 3 32 3 1 18 65 85 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 31 29 3 32 3 0 14 64 84 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 18 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 33 32 3 35 3 1 18 64 84 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 34 32 3 35 3 0 13 63 83 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 17 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 36 35 3 38 3 1 17 63 83 -8.382 -0.018 -6.700 -1.643 -2.873 1.737 -2.260 D 37 35 3 38 3 0 13 62 82 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 16 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 57 - A - - MR 39 38 3 41 3 1 16 62 82 -8.382 -0.018 -6.700 1.731 -2.431 -2.057 -1.979 D 40 38 3 41 3 0 11 60 80 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 15 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 56 - G - - MR 42 41 3 44 3 1 16 61 81 -8.382 -0.018 -6.700 -1.643 -2.873 1.737 -2.260 D 43 41 3 44 3 0 11 59 79 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 55 - U - - MR 45 44 3 47 3 1 15 60 80 -8.382 -0.018 -6.700 -1.540 -1.527 -2.276 1.634 D 46 44 3 47 3 0 10 58 78 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 54 - C - - MR 48 47 3 50 3 1 14 59 79 -8.382 -0.018 -6.700 -1.812 1.643 -2.638 -1.212 D 49 47 3 50 3 0 9 57 77 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 53 - u - - MR 51 50 3 53 3 1 13 58 78 -8.382 -0.018 -6.700 0.561 -0.860 -1.067 0.582 D 52 50 3 53 3 0 9 56 76 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 13 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - G - - MR 54 53 3 56 3 1 13 57 77 -8.382 -0.018 -6.700 -1.643 -2.873 1.737 -2.260 D 55 53 3 56 3 0 8 55 75 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 12 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 51 - A - - MR 57 56 3 59 5 1 12 56 76 -7.119 -0.038 -6.934 -7.147 -8.038 1.731 -2.431 -2.057 -1.979 D 58 56 3 59 5 0 8 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 10 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 50 G C - - MP 60 59 3 64 4 2 11 55 75 -6.979 -7.186 -0.052 -5.600 -3.842 -2.786 -3.899 0.517 -4.141 -0.799 0.091 -4.285 -3.820 3.382 -4.184 -0.647 -0.226 -3.689 -1.801 -2.950 ML 61 59 3 64 4 1 9 55 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 4 1 7 55 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 3 64 4 0 6 54 74 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 10 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 10 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 12 - c - - - ML 66 65 6 68 3 1 10 53 72 -8.382 -0.018 -6.700 -0.455 0.667 -0.182 -0.318 D 67 65 6 68 3 0 5 51 71 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 8 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 49 - C - - MR 69 68 3 71 5 1 10 52 71 -7.119 -0.038 -6.934 -7.147 -8.038 -1.812 1.643 -2.638 -1.212 D 70 68 3 71 5 0 4 50 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 7 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 48 A U - - MP 72 71 3 76 6 2 10 51 70 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 73 71 3 76 6 1 6 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 5 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 3 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 7 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 7 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 14 47 A U - - MP 78 77 6 82 6 2 8 49 68 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -3.847 -2.864 -3.862 3.367 -4.227 -5.295 0.076 -3.900 -3.751 1.018 -4.301 -0.331 -0.341 -4.473 -1.864 -2.692 ML 79 77 6 82 6 1 5 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 5 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 2 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 6 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 6 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 46 C G - - MP 84 83 6 88 4 2 6 47 66 -6.979 -7.186 -0.052 -5.600 -4.618 -4.530 -4.296 -0.756 -2.999 -4.699 3.572 -3.816 -4.348 -0.525 -4.601 -2.478 0.508 -4.683 -0.707 -3.185 ML 85 83 6 88 4 1 4 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 3 46 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 2 45 65 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 5 48 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 5 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - A - - - ML 90 89 6 92 3 1 4 44 64 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 91 89 6 92 3 0 2 43 62 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 4 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - G - - - ML 93 92 3 95 3 1 3 43 63 -8.382 -0.018 -6.700 -1.643 -2.873 1.737 -2.260 D 94 92 3 95 3 0 2 42 61 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 3 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 45 - C - - MR 96 95 3 98 2 1 2 42 62 -8.392 -0.004 -1.812 1.643 -2.638 -1.212 D 97 95 3 98 2 0 1 41 61 -4.432 -0.068 IR 98 98 3 98 2 1 2 43 63 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 27 ] - - - - - - B 99 98 3 100 132 0 1 41 60 [ BEGL 28 ] - - - - - - S 100 99 1 101 4 0 0 24 42 -0.044 -6.849 -6.257 -6.897 [ MATP 29 ] 18 27 G C - - MP 101 100 1 105 6 2 2 24 42 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.803 -3.123 -4.908 0.159 -5.319 -4.718 -0.668 -5.155 -4.368 3.653 -4.700 -0.824 -1.052 -4.508 -2.709 -3.784 ML 102 100 1 105 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 1 105 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 1 105 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 19 26 G C - - MP 107 106 6 111 6 2 2 22 40 -9.120 -9.059 -0.021 -7.835 -8.115 -8.510 -4.803 -3.123 -4.908 0.159 -5.319 -4.718 -0.668 -5.155 -4.368 3.653 -4.700 -0.824 -1.052 -4.508 -2.709 -3.784 ML 108 106 6 111 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 25 u g - - MP 113 112 6 117 4 2 2 20 38 -6.979 -7.186 -0.052 -5.600 -3.588 -3.579 -3.475 0.040 -2.473 -4.039 1.801 -3.178 -3.506 0.255 -3.894 -1.671 2.041 -3.741 2.275 -2.417 ML 114 112 6 117 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 117 117 5 117 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 21 - A - - - ML 119 118 6 121 3 1 1 16 35 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 120 118 6 121 3 0 0 16 34 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 22 - G - - - ML 122 121 3 124 3 1 1 15 33 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 123 121 3 124 3 0 0 15 33 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 23 - C - - - ML 125 124 3 127 3 1 1 13 31 -7.993 -0.020 -6.648 -1.812 1.643 -2.638 -1.212 D 126 124 3 127 3 0 0 13 32 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 24 - U - - - ML 128 127 3 130 2 1 1 1 1 * 0.000 -1.540 -1.527 -2.276 1.634 D 129 127 3 130 2 0 0 0 0 * 0.000 IL 130 130 3 130 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 131 130 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 132 99 1 133 3 0 0 30 49 -7.993 -0.020 -6.648 IL 133 133 2 133 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - G - - - ML 134 133 2 136 3 1 1 30 49 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 135 133 2 136 3 0 0 29 48 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - A - - - ML 137 136 3 139 5 1 1 29 48 -3.583 -0.284 -6.934 -3.590 -8.038 1.731 -2.431 -2.057 -1.979 D 138 136 3 139 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 139 139 3 139 5 1 1 29 48 -2.693 -0.394 -4.371 -6.204 -5.477 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 44 G C - - MP 140 139 3 144 6 2 2 28 47 -9.066 -9.006 -0.022 -7.782 -8.062 -8.457 -4.546 -3.001 -4.629 0.329 -4.957 -4.616 -0.370 -4.856 -4.197 3.588 -4.549 -0.694 -0.761 -4.339 -2.397 -3.509 ML 141 139 3 144 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 27 46 -7.494 -6.223 -0.931 -6.202 -1.335 -4.415 -0.155 0.604 -0.865 0.047 D 143 139 3 144 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 32 43 c g - - MP 146 145 6 150 6 2 2 26 45 -9.120 -9.059 -0.073 -7.835 -4.691 -8.510 -2.537 -2.600 -2.643 0.642 -2.194 -3.390 2.202 -2.711 -2.678 0.752 -0.332 -0.953 1.271 -2.811 1.521 -1.747 ML 147 145 6 150 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 33 42 u a - - MP 152 151 6 156 4 2 2 24 43 -6.842 -7.049 -0.057 -5.463 -3.042 -3.084 -3.065 0.399 0.034 -3.761 1.814 -2.959 -3.092 0.549 -3.561 -1.280 2.644 -3.271 -0.135 -2.070 ML 153 151 6 156 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 24 43 -5.367 -4.396 -0.920 -1.324 1.036 -0.904 -0.649 -0.364 D 155 151 6 156 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 34 - G - - - ML 158 157 6 160 3 1 1 21 40 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 159 157 6 160 3 0 0 20 39 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 35 - A - - - ML 161 160 3 163 3 1 1 20 39 -7.993 -0.020 -6.648 1.731 -2.431 -2.057 -1.979 D 162 160 3 163 3 0 0 19 38 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 36 - U - - - ML 164 163 3 166 3 1 1 19 37 -7.993 -0.020 -6.648 -1.540 -1.527 -2.276 1.634 D 165 163 3 166 3 0 0 18 37 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 37 - G - - - ML 167 166 3 169 3 1 1 17 36 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 168 166 3 169 3 0 0 17 36 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - A - - - ML 170 169 3 172 3 1 1 16 35 -7.993 -0.020 -6.648 1.259 -1.272 -1.276 -0.359 D 171 169 3 172 3 0 0 16 34 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - G - - - ML 173 172 3 175 3 1 1 15 33 -7.993 -0.020 -6.648 -0.592 -0.898 1.165 -0.844 D 174 172 3 175 3 0 0 15 33 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 40 - G - - - ML 176 175 3 178 3 1 1 13 31 -7.993 -0.020 -6.648 -1.643 -2.873 1.737 -2.260 D 177 175 3 178 3 0 0 13 32 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - A - - - ML 179 178 3 181 2 1 1 1 1 * 0.000 1.731 -2.431 -2.057 -1.979 D 180 178 3 181 2 0 0 0 0 * 0.000 IL 181 181 3 181 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 182 181 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR22 ACC RF01275 DESC Small nucleolar RNA sR22 LENG 58 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 20:51:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01275/CM NSEQ 6 EFFN 2.493164 CKSUM 1607452680 STATS LOCAL MSV -8.1852 0.71924 STATS LOCAL VITERBI -8.4579 0.71924 STATS LOCAL FORWARD -3.5020 0.71924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39413 1.50639 1.09427 1.63241 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 0.00000 * 1 1.16592 1.41932 1.71383 1.32308 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 2 3.27920 0.22213 3.05795 2.16678 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 3 3.27620 0.22243 3.05650 2.16626 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 4 2.77422 3.66203 0.13622 3.23730 4 G - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 5 0.14331 3.31148 3.02852 3.02281 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 6 2.67784 2.63030 3.19791 0.20042 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 7 2.77422 3.66203 0.13622 3.23730 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 8 0.14331 3.31148 3.02852 3.02281 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 9 2.67784 2.63030 3.19791 0.20042 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 10 2.77422 3.66203 0.13622 3.23730 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 11 2.35286 2.29249 0.30718 2.68282 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 12 1.79270 0.85603 1.50009 1.68453 12 c - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 13 0.31332 2.86088 1.89527 2.78896 13 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 14 0.31320 2.86136 1.89537 2.78965 14 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 15 3.27156 0.22290 3.05424 2.16544 15 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 16 0.14331 3.31148 3.02852 3.02281 16 A - - , 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 17 2.77422 3.66203 0.13622 3.23730 17 G - - , 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 18 2.63826 3.32122 0.15767 3.26298 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 19 2.63542 3.31773 0.15827 3.25814 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 20 2.66464 1.51962 2.44364 0.47043 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 21 0.14331 3.31148 3.02852 3.02281 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 22 2.77422 3.66203 0.13622 3.23730 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 23 2.93390 0.18458 3.51020 2.45963 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 24 2.67784 2.63030 3.19791 0.20042 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 25 1.24950 2.60457 0.59531 2.43015 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 26 3.43981 0.18966 3.14413 2.32708 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 27 3.42834 0.19063 3.13895 2.32487 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 28 2.77422 3.66203 0.13622 3.23730 28 G - - , 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 29 0.14331 3.31148 3.02852 3.02281 29 A - - , 1.38629 1.38629 1.38629 1.38629 0.26381 2.15334 2.15603 0.30413 1.33852 1.09861 0.40547 30 2.48947 3.09077 0.19463 3.02740 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04358 3.84805 3.84805 1.46634 0.26236 0.28724 1.38762 31 2.15127 1.12972 1.66461 0.99081 32 u - - < 1.38629 1.38629 1.38629 1.38629 0.14195 3.94955 2.17970 1.46634 0.26236 1.09861 0.40547 32 2.33119 1.22081 2.14517 0.71176 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.04345 3.85104 3.85104 1.46634 0.26236 0.29320 1.36991 33 2.77422 3.66203 0.13622 3.23730 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 34 0.14331 3.31148 3.02852 3.02281 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 35 2.67784 2.63030 3.19791 0.20042 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 36 2.77422 3.66203 0.13622 3.23730 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 37 0.46879 2.35782 2.37098 1.68079 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 38 1.91663 2.05363 0.50501 2.11088 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 39 2.77422 3.66203 0.13622 3.23730 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 40 0.14331 3.31148 3.02852 3.02281 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 41 0.67021 2.30478 1.32388 2.09949 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 42 1.73326 2.14591 0.57719 1.93202 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 43 2.94677 0.26611 2.83458 2.10055 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 44 2.93390 0.18458 3.51020 2.45963 45 C - - , 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 45 2.44553 3.22392 0.19195 3.03302 46 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 46 3.02222 2.19872 2.67470 0.25950 47 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 47 3.02648 2.19927 2.67635 0.25901 48 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 48 2.93390 0.18458 3.51020 2.45963 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 49 2.92244 0.28974 2.60743 2.08735 50 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 50 0.14331 3.31148 3.02852 3.02281 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 51 2.77422 3.66203 0.13622 3.23730 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 52 0.97796 2.04220 2.18812 0.96220 53 u - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 53 2.93390 0.18458 3.51020 2.45963 54 C - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 54 2.67784 2.63030 3.19791 0.20042 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 55 2.77422 3.66203 0.13622 3.23730 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 56 0.14331 3.31148 3.02852 3.02281 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 57 2.44419 3.22205 0.19231 3.03079 58 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03929 3.94955 3.94955 1.46634 0.26236 1.09861 0.40547 58 2.44388 3.22162 0.19239 3.03028 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01984 3.93010 * 1.46634 0.26236 0.00000 * //