INFERNAL1/a [1.1.5 | Sep 2023] NAME sR45 ACC RF01274 DESC Small nucleolar RNA sR45 STATES 169 NODES 43 CLEN 55 W 101 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:20:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01274/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 3.141113 CKSUM 3758128046 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 42.80 NC 36.00 EFP7GF -10.7146 0.71934 ECMLC 0.66891 -5.65538 2.87644 1600000 361167 0.003323 ECMGC 0.49386 -15.40000 -3.37813 1600000 151534 0.002640 ECMLI 0.69296 -3.58591 3.80294 1600000 200846 0.005975 ECMGI 0.54017 -11.11329 -0.92851 1600000 98024 0.004081 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 101 160 -7.375 -7.582 -0.039 -5.996 IL 1 1 2 1 4 1 14 104 162 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 103 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 13 102 160 -8.364 -0.016 -7.018 0.584 0.072 -0.528 -0.402 D 4 2 3 5 3 0 8 99 158 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 102 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 12 101 159 -8.364 -0.016 -7.018 -1.193 -2.082 1.471 -0.852 D 7 5 3 8 3 0 7 98 157 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 12 101 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 12 100 158 -8.364 -0.016 -7.018 -0.163 -0.860 1.000 -0.848 D 10 8 3 11 3 0 6 97 156 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 100 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 11 99 157 -8.364 -0.016 -7.018 -0.072 -0.309 0.651 -0.574 D 13 11 3 14 3 0 5 97 155 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 99 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 98 156 -8.732 -0.014 -7.049 1.503 -2.064 -0.745 -1.601 D 16 14 3 17 3 0 5 96 154 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 9 98 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - c - - MR 18 17 3 20 3 1 9 97 155 -8.732 -0.014 -7.049 -0.601 0.569 -0.770 0.346 D 19 17 3 20 3 0 3 95 153 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 97 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 64 - c - - MR 21 20 3 23 3 1 8 96 154 -8.732 -0.014 -7.049 -0.751 0.912 -0.866 -0.035 D 22 20 3 23 3 0 2 94 152 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 96 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 63 - A - - MR 24 23 3 26 5 1 8 95 153 -7.448 -0.030 -7.264 -7.476 -8.367 1.846 -3.179 -2.734 -2.805 D 25 23 3 26 5 0 2 93 151 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 5 95 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 U G - - MP 27 26 3 31 6 2 7 94 152 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -4.888 -4.840 -4.412 -1.109 -2.963 -4.717 1.335 -3.797 -4.463 -1.047 -4.677 -2.824 0.390 -4.895 3.393 -3.299 ML 28 26 3 31 6 1 3 92 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 2 92 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 89 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 93 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 93 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 g c - - MP 33 32 6 37 4 2 5 92 150 -7.375 -7.582 -0.039 -5.996 -4.086 -2.775 -4.155 0.766 -5.120 -5.091 -0.530 -4.424 -3.987 2.841 -4.449 2.331 -0.779 -4.381 -2.495 -2.959 ML 34 32 6 37 4 1 2 91 149 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 1 90 148 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 89 147 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 4 92 150 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 3 91 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - A - - - ML 39 38 6 41 3 1 4 90 148 -8.364 -0.016 -7.018 1.846 -3.179 -2.734 -2.805 D 40 38 6 41 3 0 0 88 146 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 3 90 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - u - - - ML 42 41 3 44 3 1 3 89 147 -8.732 -0.014 -7.049 -0.611 -1.132 0.166 0.821 D 43 41 3 44 3 0 0 87 145 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 2 89 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 60 - C - - MR 45 44 3 47 3 1 3 88 146 -8.732 -0.014 -7.049 -2.716 1.808 -3.538 -1.944 D 46 44 3 47 3 0 0 86 144 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 88 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 59 - G - - MR 48 47 3 50 5 1 3 87 145 -7.448 -0.030 -7.264 -7.476 -8.367 -2.403 -3.732 1.856 -3.113 D 49 47 3 50 5 0 0 85 143 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 87 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 58 G C - - MP 51 50 3 55 6 2 4 86 144 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -5.518 -3.473 -5.734 -0.343 -6.313 -4.983 -1.485 -6.000 -4.798 3.780 -5.087 -1.213 -1.853 -4.966 -3.571 -4.600 ML 52 50 3 55 6 1 1 84 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 83 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 80 138 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 85 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 85 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 57 A U - - MP 57 56 6 61 6 2 3 84 142 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -4.558 -3.419 -4.491 3.666 -5.255 -6.417 -0.902 -4.479 -4.386 0.245 -4.969 -0.792 -1.313 -5.453 -2.839 -3.304 ML 58 56 6 61 6 1 1 82 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 81 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 78 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 83 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 83 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 56 a u - - MP 63 62 6 67 6 2 3 82 140 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -2.120 -1.927 -2.326 1.853 -2.350 -3.092 1.113 -0.519 -2.322 1.308 -2.824 0.986 0.913 -2.442 -0.463 -0.105 ML 64 62 6 67 6 1 1 80 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 80 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 77 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 81 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 81 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 55 G C - - MP 69 68 6 73 6 2 3 80 138 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -5.518 -3.473 -5.734 -0.343 -6.313 -4.983 -1.485 -6.000 -4.798 3.780 -5.087 -1.213 -1.853 -4.966 -3.571 -4.600 ML 70 68 6 73 6 1 1 78 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 78 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 75 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 79 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 79 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 54 C G - - MP 75 74 6 79 4 2 2 78 136 -7.375 -7.582 -0.039 -5.996 -5.441 -5.421 -4.971 -1.597 -3.524 -5.265 3.753 -4.423 -5.065 -1.454 -5.215 -3.396 -0.118 -5.447 -1.267 -3.881 ML 76 74 6 79 4 1 1 77 135 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 76 134 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 75 133 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 78 136 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 77 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - C - - - ML 81 80 6 83 5 1 1 76 134 -7.448 -0.030 -7.264 -7.476 -8.367 -2.716 1.808 -3.538 -1.944 D 82 80 6 83 5 0 0 74 132 -4.959 -0.803 -4.221 -2.596 -2.508 IL 83 83 3 83 5 1 1 76 134 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 53 G C - - MP 84 83 3 88 6 2 2 75 133 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -5.518 -3.473 -5.734 -0.343 -6.313 -4.983 -1.485 -6.000 -4.798 3.780 -5.087 -1.213 -1.853 -4.966 -3.571 -4.600 ML 85 83 3 88 6 1 1 73 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 72 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 69 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 74 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 74 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 52 A U - - MP 90 89 6 94 6 2 2 73 131 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -4.558 -3.419 -4.491 3.666 -5.255 -6.417 -0.902 -4.479 -4.386 0.245 -4.969 -0.792 -1.313 -5.453 -2.839 -3.304 ML 91 89 6 94 6 1 1 71 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 71 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 67 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 72 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 72 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 51 G U - - MP 96 95 6 100 6 2 2 71 129 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -4.129 -2.794 -4.322 0.766 -5.430 -6.239 -0.965 -4.300 -3.892 0.666 -4.452 3.466 -1.297 -5.270 -2.898 -2.947 ML 97 95 6 100 6 1 1 69 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 69 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 65 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 70 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 70 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 50 G C - - MP 102 101 6 106 6 2 2 69 127 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -5.518 -3.473 -5.734 -0.343 -6.313 -4.983 -1.485 -6.000 -4.798 3.780 -5.087 -1.213 -1.853 -4.966 -3.571 -4.600 ML 103 101 6 106 6 1 1 67 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 67 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 64 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 68 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 68 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 49 A U - - MP 108 107 6 112 4 2 2 67 125 -7.261 -8.506 -0.061 -4.960 -4.558 -3.419 -4.491 3.666 -5.255 -6.417 -0.902 -4.479 -4.386 0.245 -4.969 -0.792 -1.313 -5.453 -2.839 -3.304 ML 109 107 6 112 4 1 1 66 124 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 66 124 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 63 122 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 66 124 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 66 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 48 - c - - MR 114 113 6 116 3 1 1 65 123 -8.732 -0.014 -7.049 0.556 0.560 -1.441 -0.540 D 115 113 6 116 3 0 0 63 121 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 65 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 47 - A - - MR 117 116 3 119 3 1 1 64 122 -8.732 -0.014 -7.049 1.846 -3.179 -2.734 -2.805 D 118 116 3 119 3 0 0 62 120 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 64 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 46 - G - - MR 120 119 3 122 3 1 1 63 121 -8.732 -0.014 -7.049 -2.403 -3.732 1.856 -3.113 D 121 119 3 122 3 0 0 61 119 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 63 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 45 - u - - MR 123 122 3 125 3 1 1 62 120 -8.732 -0.014 -7.049 -0.596 -1.148 0.306 0.724 D 124 122 3 125 3 0 0 60 118 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 62 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 44 - A - - MR 126 125 3 128 5 1 1 61 119 -7.448 -0.030 -7.264 -7.476 -8.367 1.846 -3.179 -2.734 -2.805 D 127 125 3 128 5 0 0 59 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 61 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 43 C G - - MP 129 128 3 133 6 2 2 60 118 -9.285 -9.225 -0.019 -8.001 -8.281 -8.676 -5.441 -5.421 -4.971 -1.597 -3.524 -5.265 3.753 -4.423 -5.065 -1.454 -5.215 -3.396 -0.118 -5.447 -1.267 -3.881 ML 130 128 3 133 6 1 1 57 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 57 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 54 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 59 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 59 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 42 A U - - MP 135 134 6 139 4 2 2 58 116 -7.375 -2.288 -0.370 -5.996 -4.558 -3.419 -4.491 3.666 -5.255 -6.417 -0.902 -4.479 -4.386 0.245 -4.969 -0.792 -1.313 -5.453 -2.839 -3.304 ML 136 134 6 139 4 1 1 55 113 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 54 112 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 53 111 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 58 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 61 119 -0.456 -1.954 -6.302 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - C - - - ML 141 140 6 143 3 1 1 34 67 -8.364 -0.016 -7.018 -2.716 1.808 -3.538 -1.944 D 142 140 6 143 3 0 0 32 65 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 35 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 24 - C - - - ML 144 143 3 146 3 1 1 33 66 -8.364 -0.016 -7.018 -2.716 1.808 -3.538 -1.944 D 145 143 3 146 3 0 0 31 64 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 34 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 25 - u - - - ML 147 146 3 149 3 1 1 32 65 -8.364 -0.016 -7.018 -1.056 0.476 -1.864 0.890 D 148 146 3 149 3 0 0 30 63 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 26 - G - - - ML 150 149 3 152 3 1 1 31 64 -8.364 -0.016 -7.018 -2.403 -3.732 1.856 -3.113 D 151 149 3 152 3 0 0 29 61 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 32 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 27 - A - - - ML 153 152 3 155 3 1 1 30 63 -3.371 -0.159 -7.018 1.846 -3.179 -2.734 -2.805 D 154 152 3 155 3 0 0 26 59 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 33 66 -0.805 -1.317 -5.245 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - a - - - ML 156 155 3 158 3 1 1 16 34 -8.364 -0.016 -7.018 0.517 -1.206 0.374 -0.252 D 157 155 3 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - c - - - ML 159 158 3 161 3 1 1 14 33 -8.364 -0.016 -7.018 -0.460 0.227 0.167 -0.030 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - G - - - ML 162 161 3 164 3 1 1 13 31 -8.364 -0.016 -7.018 -0.200 -1.471 1.032 -0.465 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - g - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 0.583 -1.837 0.853 -1.266 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR45 ACC RF01274 DESC Small nucleolar RNA sR45 LENG 55 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 21:20:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01274/CM NSEQ 7 EFFN 3.961426 CKSUM 3758128046 STATS LOCAL MSV -7.6826 0.71934 STATS LOCAL VITERBI -8.3799 0.71934 STATS LOCAL FORWARD -3.9053 0.71934 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40804 1.38121 1.20135 1.59299 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 0.00000 * 1 0.96183 1.30480 1.76662 1.73915 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 2 2.39312 3.02466 0.31259 2.05161 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 3 1.55428 2.01177 0.62870 2.10684 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 4 1.47995 1.59000 0.87491 1.88699 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 5 0.30372 3.00526 1.92469 2.71081 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 6 3.48484 1.91777 3.34201 0.23948 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 7 2.21499 3.22745 0.21900 3.03944 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 8 0.07814 3.88411 3.55116 3.65320 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 9 1.91453 2.27769 1.23801 0.77629 9 u - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 10 3.01665 3.87601 0.09610 3.82006 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 11 0.15625 3.60640 2.43939 3.49680 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 12 1.25057 1.66659 1.19281 1.50777 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 13 3.01283 3.87039 0.09662 3.81245 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 14 3.88194 0.12120 3.73316 2.66480 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 15 3.61157 0.09575 4.15837 3.02285 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 16 3.01829 3.87842 0.09588 3.82333 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 17 0.15627 3.60626 2.43935 3.49661 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 18 2.24369 3.51399 0.18844 3.32693 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 19 3.01184 3.86892 0.09675 3.81047 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 20 0.15677 3.60136 2.43812 3.49029 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 21 3.88306 0.12114 3.73378 2.66502 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 22 0.15655 3.60356 2.43868 3.49313 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 23 3.61157 0.09575 4.15837 3.02285 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 24 3.61157 0.09575 4.15837 3.02285 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 25 2.27011 1.01454 2.84463 0.74240 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 26 3.33157 4.28134 0.07369 3.84078 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 27 0.07814 3.88411 3.55116 3.65320 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.13849 2.17286 4.16856 1.39346 0.28531 1.09861 0.40547 28 1.01743 2.30584 1.09057 1.59565 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 29 1.78675 1.18910 1.23125 1.44362 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 30 1.57468 2.52216 0.61377 1.76414 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 31 0.96267 2.83468 0.74815 2.45169 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.26029 1.54321 4.16856 1.77925 0.18484 1.09861 0.40547 32 3.72149 2.80787 3.41501 0.12489 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 33 2.95732 3.91555 0.10228 3.67541 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 34 0.07814 3.88411 3.55116 3.65320 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 35 1.90241 2.28815 1.13323 0.85016 45 u - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 36 3.33157 4.28134 0.07369 3.84078 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 37 0.07814 3.88411 3.55116 3.65320 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 38 0.97774 0.94424 2.51746 1.86949 48 c - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 39 3.70020 2.80409 3.40518 0.12611 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 40 3.96596 0.11717 3.71741 2.69836 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 41 3.51499 2.41892 3.29526 0.16939 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 42 3.69747 2.80360 3.40391 0.12627 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 43 3.95215 0.11785 3.71048 2.69579 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 44 2.94653 3.89779 0.10386 3.65576 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 45 3.97951 0.11651 3.72416 2.70085 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 46 1.96744 1.75385 1.72826 0.67435 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 47 3.72446 2.80839 3.41637 0.12472 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 48 4.01333 0.11490 3.74082 2.70695 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 49 3.33157 4.28134 0.07369 3.84078 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 50 3.61157 0.09575 4.15837 3.02285 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 51 3.26650 0.78345 3.03149 0.78353 61 c - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 52 2.52057 3.53652 0.16169 3.22465 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 53 0.07814 3.88411 3.55116 3.65320 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 54 2.02426 0.69196 2.01749 1.45104 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.03144 4.16856 4.16856 1.46634 0.26236 1.09861 0.40547 55 1.89431 0.94013 1.94135 1.15362 65 c - - : 1.38629 1.38629 1.38629 1.38629 0.01584 4.15296 * 1.46634 0.26236 0.00000 * //