INFERNAL1/a [1.1.5 | Sep 2023] NAME sR34 ACC RF01273 DESC Small nucleolar RNA sR34 STATES 166 NODES 47 CLEN 54 W 70 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 21:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01273/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.222656 CKSUM 674949940 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 62.80 NC 37.50 EFP7GF -9.6811 0.71927 ECMLC 0.55514 -9.81581 1.63494 1600000 691650 0.001735 ECMGC 0.43491 -19.21455 -4.64782 1600000 225634 0.001773 ECMLI 0.54558 -8.26138 2.59185 1600000 447472 0.002682 ECMGI 0.44342 -15.53816 -2.18406 1600000 149183 0.002681 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 70 90 -7.063 -7.270 -0.049 -5.684 IL 1 1 2 1 4 1 13 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 13 70 90 -8.072 -0.019 -6.726 0.071 -1.754 1.143 -1.167 D 4 2 3 5 3 0 7 69 89 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 12 69 89 -8.072 -0.019 -6.726 -2.005 1.688 -2.835 -1.365 D 7 5 3 8 3 0 6 68 88 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 11 68 88 -8.072 -0.019 -6.726 -2.005 1.688 -2.835 -1.365 D 10 8 3 11 3 0 5 67 87 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 10 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 11 67 87 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 13 11 3 14 3 0 5 66 85 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 66 86 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 16 14 3 17 3 0 4 65 84 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 9 65 85 -8.072 -0.019 -6.726 -1.687 -1.648 -2.430 1.671 D 19 17 3 20 3 0 3 64 83 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 8 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 9 64 83 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 22 20 3 23 3 0 3 63 82 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 8 63 82 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 25 23 3 26 3 0 2 61 81 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 7 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - g - - - ML 27 26 3 29 3 1 7 62 81 -8.072 -0.019 -6.726 -0.527 -0.522 0.995 -0.698 D 28 26 3 29 3 0 1 60 80 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 6 61 80 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 31 29 3 32 3 0 1 59 79 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 6 60 79 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 34 32 3 35 3 0 0 58 78 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - g - - - ML 36 35 3 38 3 1 5 59 78 -8.072 -0.019 -6.726 -0.298 -0.288 0.308 0.176 D 37 35 3 38 3 0 0 57 77 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 4 58 77 -8.455 -0.017 -6.773 -2.005 1.688 -2.835 -1.365 D 40 38 3 41 3 0 0 56 76 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 3 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - G - - MR 42 41 3 44 3 1 4 57 76 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 43 41 3 44 3 0 0 55 74 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 54 - G - - MR 45 44 3 47 3 1 3 56 75 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 46 44 3 47 3 0 0 54 73 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 53 - A - - MR 48 47 3 50 3 1 3 55 74 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 49 47 3 50 3 0 0 53 72 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 52 - G - - MR 51 50 3 53 3 1 2 54 73 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 52 50 3 53 3 0 0 52 71 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 51 - C - - MR 54 53 3 56 5 1 2 53 72 -7.188 -0.037 -7.003 -7.215 -8.107 -2.005 1.688 -2.835 -1.365 D 55 53 3 56 5 0 0 51 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 50 G C - - MP 57 56 3 61 6 2 3 52 71 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.956 -3.197 -5.078 0.056 -5.534 -4.776 -0.845 -5.334 -4.465 3.686 -4.787 -0.905 -1.224 -4.607 -2.894 -3.951 ML 58 56 3 61 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 49 U G - - MP 63 62 6 67 6 2 3 50 69 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.316 -4.245 -3.966 -0.558 -2.657 -4.354 1.635 -3.450 -4.009 -0.403 -4.278 -2.239 0.755 -4.379 3.137 -2.869 ML 64 62 6 67 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 48 U A - - MP 69 68 6 73 6 2 2 48 67 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.447 -4.278 -4.257 -0.555 -3.145 -4.797 1.188 -3.858 -4.259 -0.336 -4.619 -2.169 3.438 -4.588 -0.815 -3.056 ML 70 68 6 73 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 47 A U - - MP 75 74 6 79 6 2 2 46 65 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -3.989 -2.971 -3.992 3.446 -4.430 -5.513 -0.117 -4.021 -3.877 0.865 -4.434 -0.416 -0.534 -4.667 -2.057 -2.815 ML 76 74 6 79 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 46 G U - - MP 81 80 6 85 6 2 2 44 63 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -3.756 -2.484 -3.933 1.043 -4.764 -5.493 -0.343 -3.939 -3.561 1.167 -4.090 3.216 -0.698 -4.667 -2.285 -2.607 ML 82 80 6 85 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 45 C G - - MP 87 86 6 91 6 2 2 42 61 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 44 C G - - MP 93 92 6 97 4 2 2 40 59 -7.063 -7.270 -0.049 -5.684 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 94 92 6 97 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - A - - - ML 99 98 6 101 3 1 1 37 56 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 100 98 6 101 3 0 0 36 55 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - C - - - ML 102 101 3 104 3 1 1 36 55 -8.072 -0.019 -6.726 -2.005 1.688 -2.835 -1.365 D 103 101 3 104 3 0 0 35 54 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - G - - - ML 105 104 3 107 3 1 1 35 54 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 106 104 3 107 3 0 0 34 53 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 43 - G - - MR 108 107 3 110 3 1 1 34 53 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 109 107 3 110 3 0 0 32 52 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 42 - A - - MR 111 110 3 113 5 1 1 33 52 -7.188 -0.037 -7.003 -7.215 -8.107 1.762 -2.590 -2.200 -2.154 D 112 110 3 113 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 41 C G - - MP 114 113 3 118 6 2 2 32 51 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 115 113 3 118 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 40 U A - - MP 120 119 6 124 4 2 2 30 49 -7.063 -7.270 -0.049 -5.684 -4.447 -4.278 -4.257 -0.555 -3.145 -4.797 1.188 -3.858 -4.259 -0.336 -4.619 -2.169 3.438 -4.588 -0.815 -3.056 ML 121 119 6 124 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - G - - - ML 126 125 6 128 3 1 1 27 46 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 127 125 6 128 3 0 0 26 45 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - A - - - ML 129 128 3 131 3 1 1 26 45 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 130 128 3 131 3 0 0 25 44 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - g - - - ML 132 131 3 134 3 1 1 25 44 -2.788 -0.242 -6.726 0.224 -0.378 0.364 -0.367 D 133 131 3 134 3 0 0 23 42 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 25 44 -1.878 -0.544 -4.578 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - G - - - ML 135 134 3 137 3 1 1 23 42 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 136 134 3 137 3 0 0 22 41 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - A - - - ML 138 137 3 140 3 1 1 22 41 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 139 137 3 140 3 0 0 21 40 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - U - - - ML 141 140 3 143 3 1 1 21 40 -8.072 -0.019 -6.726 -1.687 -1.648 -2.430 1.671 D 142 140 3 143 3 0 0 20 39 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - G - - - ML 144 143 3 146 3 1 1 20 39 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 145 143 3 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - A - - - ML 147 146 3 149 3 1 1 19 37 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - U - - - ML 150 149 3 152 3 1 1 17 36 -8.072 -0.019 -6.726 -0.551 -0.955 -0.389 1.027 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - G - - - ML 153 152 3 155 3 1 1 16 35 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 37 - A - - - ML 156 155 3 158 3 1 1 15 33 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 38 - u - - - ML 159 158 3 161 3 1 1 13 31 -8.072 -0.019 -6.726 0.087 -0.123 -1.116 0.640 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 39 - A - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 1.762 -2.590 -2.200 -2.154 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR34 ACC RF01273 DESC Small nucleolar RNA sR34 LENG 54 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 21:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01273/CM NSEQ 4 EFFN 2.582031 CKSUM 674949940 STATS LOCAL MSV -8.5173 0.71927 STATS LOCAL VITERBI -8.5098 0.71927 STATS LOCAL FORWARD -3.5205 0.71927 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27826 1.62561 1.06058 1.72355 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 0.00000 * 1 1.35321 2.69619 0.55610 2.29574 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 2 2.98350 0.17575 3.55959 2.49972 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 3 2.98350 0.17575 3.55959 2.49972 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 4 2.81576 3.70895 0.12993 3.28395 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 5 0.13713 3.35241 3.06551 3.06801 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 6 2.71655 2.66250 3.23805 0.19251 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 7 2.81576 3.70895 0.12993 3.28395 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 8 0.13713 3.35241 3.06551 3.06801 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 9 1.82483 1.75778 0.64490 1.95468 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 10 2.81576 3.70895 0.12993 3.28395 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 11 0.13713 3.35241 3.06551 3.06801 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 12 1.62866 1.58357 1.14261 1.27446 12 g - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 13 2.98350 0.17575 3.55959 2.49972 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 14 2.65714 3.35305 0.15356 3.29086 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 15 3.04256 1.63256 2.84723 0.35831 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 16 3.09983 2.00022 2.86368 0.27105 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 17 0.29813 2.91188 1.93198 2.83771 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 18 1.97148 3.01367 0.28074 2.87503 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 19 3.30998 0.21400 3.09959 2.19765 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 20 3.30897 0.21409 3.09910 2.19747 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 21 0.13713 3.35241 3.06551 3.06801 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 22 2.98350 0.17575 3.55959 2.49972 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 23 2.81576 3.70895 0.12993 3.28395 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 24 3.31138 0.21386 3.10028 2.19790 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 25 3.10030 2.00025 2.86390 0.27100 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 26 2.81576 3.70895 0.12993 3.28395 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 27 0.13713 3.35241 3.06551 3.06801 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 28 1.23922 1.64587 1.10381 1.68234 28 g - - _ 1.38629 1.38629 1.38629 1.38629 0.20992 1.76919 3.96985 0.20841 1.67062 1.09861 0.40547 29 2.81576 3.70895 0.12993 3.28395 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 30 0.13713 3.35241 3.06551 3.06801 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 31 2.71655 2.66250 3.23805 0.19251 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 32 2.81576 3.70895 0.12993 3.28395 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 33 0.13713 3.35241 3.06551 3.06801 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 34 1.82745 2.10499 1.66011 0.64015 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 35 2.81576 3.70895 0.12993 3.28395 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 36 0.13713 3.35241 3.06551 3.06801 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 37 1.33002 1.46412 2.19815 0.93334 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 38 0.13713 3.35241 3.06551 3.06801 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 39 0.30676 3.05370 1.83748 2.85122 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 40 2.48249 3.27639 0.18292 3.08204 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 41 0.13713 3.35241 3.06551 3.06801 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 42 2.81576 3.70895 0.12993 3.28395 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 43 2.47538 3.26630 0.18476 3.07011 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 44 2.47592 3.26707 0.18462 3.07102 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 45 3.08331 2.00216 2.81025 0.27581 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 46 3.06472 2.23951 2.72316 0.24698 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 47 0.30710 3.05189 1.83726 2.84907 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 48 2.18998 3.02993 0.25088 2.78640 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 49 3.50943 0.18059 3.20003 2.35867 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 50 2.98350 0.17575 3.55959 2.49972 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 51 2.81576 3.70895 0.12993 3.28395 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 52 0.13713 3.35241 3.06551 3.06801 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 53 2.81576 3.70895 0.12993 3.28395 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03848 3.96985 3.96985 1.46634 0.26236 1.09861 0.40547 54 2.81576 3.70895 0.12993 3.28395 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.01943 3.95079 * 1.46634 0.26236 0.00000 * //