# STOCKHOLM 1.0
#=GF ID snR30
#=GF AC RF01271
#=GF DE Small nucleolar RNA snR30
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 80.0
#=GF NC 74.6
#=GF TC 96.6
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Published; PMID:14749391; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 17.51 -Z 2958934 CM SEQDB
#=GF CL CL00078
#=GF DR snornadb; snR30;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 7744794
#=GF RT Isolation and characterization of the small nucleolar ribonucleoprotein
#=GF RT particle snR30 from Saccharomyces cerevisiae.
#=GF RA Lubben B, Fabrizio P, Kastner B, Luhrmann R
#=GF RL J Biol Chem. 1995;270:11549-11554.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

X07673.1/425-1032          AACCAUAGUCUCGUGCUAGUUCGGUACUAUACAGGGAAGGGAAGUCACUCGCAUACGUGUGUGUGCAUUUCUUGCUAUUGCUGCUUAGCUUCUCUAAA-ACACUGGGCUA-CGUUUUUCAACGCUCGAGAGGCAGAGUCUCAAGGAGCCUCCAAUGGGCCUCACGUAUU-CA--UCUAGAUGGCGCUUCGGACAACGGCA
AABY01000047.1/17961-17352 AACCAUAGUCUCGUGCUAGUUCGGUACUAUACAGGGAAGGGAAGUCACUCGCAUACGUGUGUGUGCACUUCUUGCUAUUGCUGCUUAGCUUCUCUAAA-ACACUGGGCUAGCG-UUUUCAACGCUCGAGAGGCAGAGUCUCAAGGAGCCCCCAAUGGGCCUCACGUAUU-CACAUCUAGAUGGCGCUUCGGACAACGGCA
AACH01000215.1/7327-6713   AACCAUAGACUCGUGCUAGUUCAGUACUAUACAGGGAAGGGAAGUCACGCGCAUACGUGUGUGUGCAUUUCUUGCUAUUGCUGCUUAGCUUCUCUAAAAACACUGGGCUAGCGUUUUUCAGCGCUCGAGAGGCAAAGUCUCAAGGAGUCCCCAAUGGGCCUCACGUAUUUCACAUCUAGAUGGCAUUUUGGACAUCGGCA
AACI02000330.1/3807-4421   AACCAUAGUCUCGUGCUAGUUCGGUACUAUACAGGGAAGGGAAGUCACGCGCAUACGUGUGUGUGCACUUCUUGCUAUUGCUGCUUAGCUUCUCUAAAAACACUGGGCUAGCGUUUUUCAGCGCUCGAGAGGCAGAGUCUCAAGGAGCCCUCAAUGGGCCUCACGUAUUUCACGUCUAGAUGGCGCUUCGGACAUCGGCA
AACA01000009.1/17253-17860 AACCAUAGUCUCGUGCUAGUUCGGUACCAUACAGGAAAGGGAAGACACGCACAUACGUGUGUGUGCGCUUCUUGCUAUUGUUGCUUAGCUUUCCUAAA-ACACUGGGCUAGCGUUUCUCAACGCUCGAGAGGCAGAGUCUCAAGGAGCCCCCAGUGGGCCCCAUGCAUC---CAUCUAGAUGGCACUUCGGACAGUGGCA
#=GC SS_cons               ::::::::<<<<<<<-<<<<_____>>>>>>>->>>>::::{{{{-{{-{{{{-{{{,<<<<-----------<<<<________>>>>---------.>>>>,[[[[[[,,<<<<<<<_______>>>>>>>,,,((((((,,,<<<<<<<---<<<<<<<--<<<<-.----------------<<-<<-<<<<<<<<
#=GC RF                    AACCAUAGucuCGugCuaGuUCgGUaCuauaCAGggaAGGGaaGuCaCgCGCaUaCGUGuGuGUGCauUUCUUGCuaUUGcUGCUuaGCUUcuCUAAA.aCaCUGGGCuaGCGcuucuCAaCGCUCGagaggCAgAGuCuCaAGGaGcCccCAaUGggCCcCAcGcauu.cAcaUCUAGAUGGCacuucGGACagcggCa

X07673.1/425-1032          UCACAUAAGAGAUGCAGCUCCUGACUUCUCCUCUGAUCUUCGUGAUCAGAGUUUU-GAGUCGUCAGACUACGAGCAGUUUCUCUUAGUCGUUGCAUCGGGUGCUGUUGCCUU-AAGCAUGUGUAUAUGGGGUUCGGGGGCUGUUGCCAUGAUAUAUAUGGAUGAGACAGAAGUGGCCCCGUUGACGAGUUUAACUUAGAU
AABY01000047.1/17961-17352 UCACAUAAGGGAUGCAGCUCCUGACUUCUCCUCUGAUCUUCGUGACCAGGGUUUU-GAGUCGUCGGACAACGGGCAGUUUCUCUUAGUCGUUGCGUCGGGUGCUGUUGCUUU-AACGAUGUGUACGAGAGGUUCGGGGGCUGUUGCCAUGAUAUAUAUGGAUGAGACAGAAGUAGCCCCGUUGACGAGUUUAACUUAGAU
AACH01000215.1/7327-6713   CUAAAUAAGAGAUUCAGCUCCUGACUUCUCCUCUGGUCUUCAUGAACAGGGUUUUUGAGUCGUCGGAUCAUGGGCGGUUUCUCUUAGUCGUUGCACCGGGUGCCAUUGUCUU-AACGUUGUGUGCGGGUGGUUCGGGGGCUGUUGCCAUGAUUUAUAUGGAUGAGACAGAAGUAGCCCCGUUGACGAGUUUAACUUAGAU
AACI02000330.1/3807-4421   UUAUAUGAGGGAUUCGGCUCCCAACUUCUCCUCUGGUCUUCGUGACCGGGGUUUUUGAGUCGUUGGGUCAUGGGUUGUUUCUCUCAGUCGUUGCAUCGGGCGUCGUUGCCUU-AACGAUGUGUGCGAGAGGUUCGGGGGCUGUUGCCAUGAUUUAUAUGGAUGAGACAGAAGUGGCCCCGUUGACGAGUUUAACUUAGAU
AACA01000009.1/17253-17860 CUAUAUAGGGGAUUCGGCUUCCAACUUCUCCUCCGGCCUUCGCGGCCGGGGUUUU-GAGUCGUUGGAUCACGGGCCGUUUCCCUUAGUCGUUGUCUUGGGUGUUGUUGCCUUUAACGAUGUGUGCGAGGGGUUCGGGGGCUGUUGCCAUGAUUUAUAUGGAUGAGACAGAAGUAGCCCCGUUGACGAGUC-AACUUAGAU
#=GC SS_cons               <<<<-<<<<<<<--<-<<<<<<<<<--<<<<<<<<<<<_____>>>>>>>>----.>>>-->>>>>----->>>>->-->>>>>>>>>---------->>>>>>>>>>>>--.>>------>>>>-->>>>>>>>>>>>>>,,,,<<<<<_____>>>>>,)))))),,,,,]]]]]]}}}}}-}}-}}---}}}}::::
#=GC RF                    ccacAugaGgGaUuCaGCccCcgaCUUCuCCcCcGguCUUCguGacCgGgGUUUU.GaGUCGucgGAucAuggGCaGUUuCcCucaguCGUUGcaucGgguGccgcuGCCUU.aacgaUGUgugCgaGgGGuuCGggGgCuGUUGCCaugAUuUAuauGGAuGaGaCAGAAGuaGCCCCGuuGACGAGuuUAaCuuAGAU

X07673.1/425-1032          UAAGUAGGACGCAUGAUCUUGAGCUCUUUUCCUAUACUUUGUCCUAUGGCCAGCUUUCUCCUUAUUACGAAGAGAUUGCGGGAUGUGGGUGCAGAGUGGGAAAAUCUGAGUUCGGUCAUCUUUGUUGUUCGUCCUACCGCAGUAUAUUCCUAAACACUAUGAAAUGACCCUAGUU-GGUCCAUGAUCAUUUGGGUAAAAC
AABY01000047.1/17961-17352 CAAGUAGGAUGCAUGACCUUGAGCUCUUUUCCUAUACUUUGUCCUAUGUCCGGCUUUCUCCUUAUUACGAAGAGAUUGCAUGAUGAAGGUGCAGAGUGGGAAAAUCUGAGUUCGGUCGUCUUUGUUGUUCGUCCUACCGCAGUAUAUUCCUAAACACUAUGAAAUGACCCUAGUU-GGUCCAUGAUCAUUUGGGUAAAAC
AACH01000215.1/7327-6713   CAAGUAGGAUGCAUGAUCUUGAGCUCUUUUCCUAUACUUUGUUCCAUGCUCUGCUUUCUCCUUAUUACGAAGAGAUGGCAGGACGUGUGUGCCGAGUGGGAAAAUCUGAGUUCGGUCAUCUUCGUUGUUCAUCCUACCGCAGUAUAUUCCUAAACACUAUGAAAUGACCCUAGUUUGGUCCAUGAUCAUUUGGGUAAAAC
AACI02000330.1/3807-4421   CAAGUAGGAUGCAUGAUCUUGAGCUCUUUUCCUAUACUUUGUCCCAUGCCCGGCUUUCUCCUUAUUACGAAGAGAUAGCAGGAUGUGGGUGCAAAGUGGGAAAAUCUGAGUUCGGUCAUCUUUGUUGUUCAUCCUACCGCAGUAUAUUCCUAAACACUAUGAAAUGGCCCUAGUUUGGUCGAUGAUCAUUUGGGUAAAAC
AACA01000009.1/17253-17860 CAAGUAGGAUGCAUGAUCUUGAGCUCUUUUCCUAUACUUUCUCCCACACCGGGCUUUCUCCUUAUUACGAAGAGAGAGCAAGGCGCGAGGGC-GAGUGGGAAAAUCUGAGUUCGGUCAUCUUUGUUGU-CAUCCUACUGCAGUAUAUUCCUAAACACUAUGAAACGGCCCUAGUUUGGUCAAUGAUCAUUUGGGUAAAAC
#=GC SS_cons               :::<<<<<<<<--<<<<--<<<<<<<<<<<<<<--<<<<<<<<<<<<<-<<-<<--<<<<___________>>>>-->>->>->>>>>>->>>>>>>>>>>>>>--->>>>>>>>>>>----------->>>>>>>>:<<<<<<<----------<<<---<<<<<<-<-<-<______>->->->>>>>>->>>-----
#=GC RF                    cAAGuaGGacGCAuGacCUuGagCuCuuuuCCuAUaCucugucccgcgcccgGCUUuCuCCUUAUUACGAAGaGauaGCAggacgcgggugcagaGugGGaaaaUCUGaGuuCgguCaUCUUuGUUGUUCguCCuaCcGCaGuauAUUCCUAAACaCuAUGaaauGaCCCuAGUUUGGUCaaUGAuCauuuGgGuAAAAC

X07673.1/425-1032          CAUACUGCAGACAUCU
AABY01000047.1/17961-17352 CAUACUGCAGAUAUCU
AACH01000215.1/7327-6713   CAUACUGCAGACAUCU
AACI02000330.1/3807-4421   CAUACUGCAGACAUCU
AACA01000009.1/17253-17860 CAUACUGCAGACAUCU
#=GC SS_cons               ->>>>>>>::::::::
#=GC RF                    CauaCuGCAGAcAUCU
//
