# STOCKHOLM 1.0
#=GF ID snR83
#=GF AC RF01264
#=GF DE Small nucleolar RNA snR83
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 75.0
#=GF NC 73.0
#=GF TC 77.5
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 22.42 -Z 2958934 CM SEQDB
#=GF CL CL00023
#=GF DR snornadb; snR83;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Saccharomyces_cerevisiae300038;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15306656
#=GF RT Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the
#=GF RT Saccharomyces cerevisiae genome.
#=GF RA Schattner P, Decatur WA, Davis CA, Ares M Jr, Fournier MJ, Lowe TM
#=GF RL Nucleic Acids Res. 2004;32:4281-4296.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

Z49808.1/21552-21857       ACCCAAAAACAUCAAGAAAAGCCUUUCAAUAAAUUGCUCUUCUCUUGGCGAAAGAAAGCGGG----GG--GCAAAAAGAAUCACGGGACUUAUGUUUCGGGAUCUCUUUG------UUU------CUUCUUUUUUUCCCGGAGAAUAAUUUUUUAGGACCAAUUACCGUAGUUGCGACUACAACAAUUGUUGUUCAUACC
AABY01000043.1/27193-26893 ACCCAAAAACAUCAAGAAAAGCCUUUCAAUAAAUUGCUUUUUUCUUGGCGAAAGAAAGCAGC----GG--UAAAGAGGGAGCUCGGGACUUAUGAUCCGGG-UCUCUUUG------UUC------CUUUUUUUUUUCCCAGAAAAUAA-UUUUUAGGACCAAUUACCGUAGUUGCGACUACAACAAUUGUUGUUCAUACC
AACH01000838.1/496-192     ACCCAAAAACAUCAAGAAAAGCCUUUCAUUAAAUUGCUUUUCUCUUGGCGAGAGAGAGAGGU----GGCGACAAGA-GGGCUCCGGGACUUAUGUUUCGGAGUCUUUUUU---CUUUCG------CUUCUUUUUUUCCCGGAGAAC-ACCUUUCAGGACCAAUUACCGUAGUUGCGACUACAACAAUUGUUGUUCAUACC
AACI02000694.1/1595-1913   ACCCAAAAACAUCAAGAAAAGCCUUUCAAUAAAUUGCUUUUUUCUUGGCGGAAAAGAGGGAAAAAUGGUGGGGAGAAGGGUCCCGGAACUUAUGUUUCAGGCCCUUCUUUUUCCUUUUUUUUUUACUUUUUUCC-UCCCGGAAAAUAAUUUUUCAGGACCAAUUACCGUAGUUGCGACUACACCAAUUGUUGUUCAUACC
AACA01000157.1/9531-9834   ACCCAAAAACAUCAAGAAAAGCCUUUCAAUAAAUUGCUUUUUUCUUGGCGAGGAGGAGAGGGAA--GG--UGAGAAUGGGGCCUGAGACUUCGGUUGCGGGUUCUCUUUUUUUCUUUCU------CUUUUUUUU-UCCCGGAAAAUAACUUUUCAGGACCGAUUACCGUAGUUGCGACUACACCAAUUGUUGUUCACACC
#=GC SS_cons               ::((((((((--------------((((((((((((,,,<<<<<<-<<-<<<<<<<<<<<<-....--..---<<<-<<<<<<<<<<<<____>>>>>>>>>>>>->>>-...------......>>>>>>>>>>>>>>>>>>>>,,,,,,,,,,<<<<<<<<<---<<<<<____>>>>>--->>>>>-->>>>,,,,,
#=GC RF                    ACCCaaaaaCAUCAAGAAAAGCCUuuCaauaaauuGCUuuucuCcUGGCGagggagagagGa....GG..uaAagaagGggcccGggaCUUauGuccCgggccCuuucuu...cUUUuu......CcucucucccuCCCgGagaauAAuuUUUuAGgaCCaauuACCGuaGuUGCGaCuaCAaCaauuGUUGuuCAuACC

Z49808.1/21552-21857       CCCACGAUUUACUUUUUGAAAACUAGUUUUUGGAAUAAUAAUGUUGUAAAAUUUCCCUUUUUCCACCCCGAUUUGUAUUUUAUUUUUCGUUACAAAAUUGGGACUAAUAUUAAGGGCGACAGUU
AABY01000043.1/27193-26893 CCCACGAUUUACUUUUUGAAAACUAGUUUUUGGAAUAAUAAUGU---AAAAUUUCCCUUUUUCCACCCCAAUUUGUAUUUAAUUUUUCGUUACAAAAUUGGGACUAAUAUUAAGGGCGACAGUU
AACH01000838.1/496-192     CCCACGAUUUACUUUUUGAAAACUAGUUUUUGGAAUAAUAAUGUUGU-AAAAUUCCCUUUUUCCACCCCAAUUUGUAUUUUA---UUCGUUACAAAAUUGGGACUAAUAUUAAGGGCGACAGUU
AACI02000694.1/1595-1913   CCUACGAUUUACUUUUUGAAAACUAGUUUUUGGGAUAAUAAAGUUGU-AAAAUUCCCUUUUUCCACCCCAAUUUGUAUUUCA---UUCGUUACAAAAUUGGGACUAACAUUAAGGGCGACAGUU
AACA01000157.1/9531-9834   CCCACGA-----UUUUUGAAAACUAGUUUUUGGCAUAAUAACGUU---UAGAUUUCCCUUUUCCACCCUAAUUUGUAUUUAAUUGUUCGUUACAAAAUUGGGACU-AUAUUAGGGGCGACAUUU
#=GC SS_cons               ,,,,)))))))----)))))-----))))))))::::::::::::::.::::::<<<<<-------<<<<<<<<<<<_____________>>>->>>>>>>>--------->>>>>::::::::
#=GC RF                    CCcACgauuuaCUUUuuGaaAACUAGuuuuuGGaAUAAUAAuGUUGU.aAAaUUcCCuuUUUCCACCCcaauuuGuaUUUuAUUuUUCGUuaCAaaauugGGACUAAuAUUaaGGgCGACAgUU
//
