# STOCKHOLM 1.0
#=GF ID snR10
#=GF AC RF01258
#=GF DE Small nucleolar RNA snR10
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 70.0
#=GF NC 66.5
#=GF TC 72.3
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.48 -Z 2958934 CM SEQDB
#=GF CL CL00031
#=GF DR snornadb; snR10;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 6197183
#=GF RT Yeast contains small nuclear RNAs encoded by single copy genes.
#=GF RA Wise JA, Tollervey D, Maloney D, Swerdlow H, Dunn EJ, Guthrie C
#=GF RL Cell. 1983;35:743-751.
#=GF WK Small_nucleolar_RNA
#=GF SQ 15

Z72610.1/833-1077              AACGCAAAUUUAACAGCCAUUCGUAACAC-GU-ACA-GUAUCUCGUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGAAGAAUGUGGAUUG-GUGUUGCA----AUAUA----------UUUAU-U-AUUGGCU--------------------UGGACUGGAGA-ACAA-----A------U-UUAUCGAUC
AABZ01000003.1/45202-44958     AACGCAAAUUUAACGGCCAUUCGCAACAU-AU-ACA-GUAUCUCAUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGAAGAAUGUGGAUUU-GUGUUGUA----AUAUA----------UUUAU-U-AUUAGCU--------------------UGGACCGGAGA-ACAA-----A------U-UUAUCGAUC
AACA01000537.1/2766-2521       AACGCAAAUUUAACAGCCAUUCGCAGCAC-GU-ACA-GUAUCUCAUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGAAGAAUGUGGAUUU-GUGUUGCA----GUAUA----------UUUAC-U-ACUGGCU--------------------UGGACUGGAGA-ACAA-----A------G-UUAUCGAUC
AADM01000052.1/7763-8010       AACGCAAAUUCA-CAGCCAUUCGCAGUGCAUA-ACA-GCAUCUCCUUGAGGUCGAACCCC--UCCGGGGCGUUCUUGGCCCAUGACAAGUGUAGAUAGUGUGCUGCC----UUUUU----------AUUAA-GCUAUAGCU--------------------UGGACUGGAGA-AGAA-----A------U-UUACUGAUC
CR382125.1/1700339-1700595     AACGCAAAACUCACAGACAUUCGCAGCGC-AU-AAAAGCAUCCUCUUGAGGUUGAACCCC--UCCGGGGCGUUCUUGGCCCAUGAAAAGUUGGGAUAU-GUGUUGCA----GUUUG----------CAUAA-C-UAUUUUCG-----------------GAUGUACUGGAGA-ACGAAUCCCA------U-CGAAUGGUC
AACF01000138.1/19155-18890     AACGCAAAAACA-CAGCCAUUCACAACAU-AUAACA-GUAUCUCAUUGAGGUUGAACCCC--UCCGGGGCGUUCCGGUCCCAUGACAAAUGUAGAAUU-GUGUUGUAAACUAAAAA----------UUCAU-U-UUUUUGUUUUAU---------UUUGCCUGUGCUGGAGA-AUAA-----ACUUUUCU-UUAUUGGUC
AAFM01000016.1/250023-249797   AACGCAAAUUCA-CAGCCAUUCGCAAC-G-CU-AAU-GCAUUCCUUUGAGGUUGAACCCU--UA--UGGCGUUCU-GACCCAUGACCAUA--GGAGUA-UAGUUGUC----GAAAG----------------U-GUCAGAA--------------------UGGACUGGAGA-ACAA------------U-UGGUUGAUC
AAVQ01000002.1/1147703-1147933 AACGCAAAUUUCACAGCCAUUAGCAACGC--U-AAA-GCAUUCCUUUGAGGUUGAGCCCA--UUAC-GGCGCUCU-GACCCAUGACCAU--UGGGAUA-UUGUUGU-------GGA-----------UACU-U-CCGUCGG--------------------UGGACUGGAGA-ACAA------------U-CGGUUGAUC
AAFT01000001.1/74020-74263     AACGCAAAUUCA-CAGACGUCCACAACGU--U-ACA-GCAUCCCGUAGAGGCUGAACCCA--UUAC-GGCGUUCU-GGCCCAUGACCACUGGGGUAUU---GUUGUA----UUGGAGGGCGCAAGCUCUCC-U-CUUGCGG--------------------CGGACUGGAGA-ACAA-----C--------UGGUUGAUC
AAZN01000229.1/53179-53449     AACGCAAAUUUCACAGCCAAUCGCAACAUAUA-ACA-GUAUCACAUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGACAUUUGUUGAUUU-GUGUUGCA----ACGAU----------UCUGAUA-UUUUUUAAUGUUAGAGUUGUCUUUGCUUGGACUGGAGA-AUAA-----ACU--AUA-UAAAUGAUC
AACE03000009.1/471521-471264   AACGCAAAUUUCACGGCCAUUCGCAACAUAUA-ACA-GCAUCCCCUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGACAAGCGUGGAUAUUGUGUUGCC----UUUCG----------CUUUUGC-GAAGUCUGU---------------GCCUGGACCGGAGA-GCAA-----AC----CG-UUACUGAUC
CR382136.2/435988-436222       AACGCAAAACCA-CAGCCAUUCACAAC-G-UU-AAU-GCAUUCCCUUGAGGUUGAACCCA--UUA-UGGCGUUCUUGACCCA--UGACCAUCGGAAUA-UAGUUGU-------GUU----------UUUUU-C-ACUGGA---------------------UGGACUGGAGA-AAAA-----U------U-UGGUUGAUC
AE016819.5/317647-317411       AACGCAAAUUCA-CAGCCACUCGUAGCAC-AU-ACA-GCAUCCCCUUGAGGUUGAACCCC--CCCGGGGCGUUCUUGACCCAUGACAAGCGCGGAUAU-GUGUUGC---------C----------UUUAU-G-C-UUGCU--------------------UGGACUGGAGA-ACAA-----A------UCCAACUGGUC
AAFN02000069.1/73765-74015     AACGCAAAAUUCACAGCCAUUAACAACGU--C-AAA-GCGUUCCUUCGAGGUUGAACCCAAUUAUUUGGCGUUCUUGACCCA--UGACCUUUGGAAUA-UUGUUGUA----CUUUA----------UGUUU-U-AUUUGA---------------------UGGACUGGAGAAAAAA-----A------U-UCAUUGAUC
X03372.1/207-451               AACGCAAAUUUAACAGCCAUUCGUAACAC-GU-ACA-GUAUCUCGUCGAGGUUGAACCCC--UCCGGGGCGUUCUUGACCCAUGAAGAAUGUGGAUUG-GUGUUGCA----AUAUA----------UUUAU-U-AUUGGCU--------------------UGGACUGGAGA-ACAA-----A------U-UUAUCGAUC
#=GC SS_cons                   :::::::::::::((((((,,,<<<<<<<.-<.<<<.----------<-<<<<<<<<<<<..____>>>->>>>-->>>>>-------->>>>-----.>>>>>>>,....,,<<<.........._____.>.>>,,,,,....................)))-)))::::.::::.....:......:.(((((((((
#=GC RF                        AACGCAAAuUuaACaGcCaUUcgCAaCac.uc.aca.GcAUcuCuUuGAGGuuGAaCCCc..UccggGGCGuUCUUgaCCCAUGAaaaaugugGAuuu.guGuUGca....auggg..........uuUau.c.ccuugau....................uGgACuGGAGA.AcAA.....A......u.uggcuGaUC

Z72610.1/833-1077              UUGGGUGCAACAGUCUUUCUGUC--GUCUGUUUUU-----UAGCAGAUCUAAGGG--UUUACCUUCGUGUGCCCGGAUGAGGACCGUUGCAAGGAUUGAUAAUACAACU
AABZ01000003.1/45202-44958     UUGGGUGCAACAGUCCUUCUGUC--GUCUGCUUUA-----UAGCAGAUCUAAGGG--UUUACCUUCGUGUGCCCGGAUGAGGACCGUUGCAAGGAUUGAUAAUACAUUU
AACA01000537.1/2766-2521       UUGGGUGCAACAAUCUUUCUGUC--GUCUGUUUUU----AUAGCAGAUCUAAGGG--UUUACCUUCGUGUGCCCGGAUGAGGACCGUUGCAAGGAUUGAUACGACAUCU
AADM01000052.1/7763-8010       UUGGGUGCGACGGCUCAUGUGUU--GCUUGUCUUC----GUGGCAGGUCUAAGGG--AUUGCCUUCGUGCGCCCGUAUGGGAGUUGUUGCAAUGAUCACUAAUACAAAU
CR382125.1/1700339-1700595     UUGGGUGCAGCGACUCAUCUGUU--GCUUGGUCUUA--GUUACCAGGUCUAAGGG--UUUACCUUCGUGUGCCCGUAUGAGAGUGGCUGCAAGGAUCAGUCGAACAAAC
AACF01000138.1/19155-18890     UCGGGUGCAACAAUUCUUCUGUC--GUUUGCCUUC-----GUGCAAAUCUAAGGG--UUUACCUUCGUGUGCCCGUAUGGGAGUCGUUGCAAGGAUCACUAAUACAUUU
AAFM01000016.1/250023-249797   UUGGGUGCAGCACCUCAUCGGUA---AAUACU---------UGUAUUUCUAAGGG--UUUACCUUCGUGUGCCCGUAUGGGAGGUGGUGCAAUGAUCAGCUGUACAUUU
AAVQ01000002.1/1147703-1147933 UUGGGUGCAGCAUUCCAUCUGUA--A----AUACU-----UGUUAUUUCUAAGGG--AUUACCUUCGUGUGCCCGUAUGGGGUUUGGUGCAAUGAUCAGCUGUACAUCG
AAFT01000001.1/74020-74263     UUGGGUGCGAUAUUCCAUCGGCG---AAUAC--UU-----U-GUAUUUCUAAGGG--ACUGCCUUCGUGCGCCCGUAUGGGGAGUGUUGCAAUGAUCAGCUAUACAUGU
AAZN01000229.1/53179-53449     UUGGGUGCAACGAUUCAUCUGUU--GUCUGUCUUU-----GUGCAGAUCUAAGAG--UUUACCUUCGUGUGCUCGUAUGGGAGUGGUUGCAAGGAUCAUUAAUACAUCU
AACE03000009.1/471521-471264   UUGGGUGCAACGUUCCAUCUGUU--GUUUGUCCUU----GUGGCAGAUCUAAGGGAUUUUACCUUCGUGUGCCCGUAUGGGGAUCGUUGCAAUGAUCGUUAAUACAUCU
CR382136.2/435988-436222       UUGGGUGCAGCACUCCAUCUGUU--GAAUAAUUUA-----U-UUGUUUCUAAGGG--AUUACCUUCGUGUGCCCGUAUGGGGAGUGGUGCAAUGAUCAGCUGGACAUAU
AE016819.5/317647-317411       UUGGGUGCAGCGGCCCAUCCGUG---CCUGGCCUU------GCCAGGCCUAAGGG--ACUGCCUUCGUGCCCCCGUAUGGGGGCUGCUGCAAGGAUCAGUUGAACAUUA
AAFN02000069.1/73765-74015     UUGGGUGCAGCAUCUCAUCUGUUUUGAGAUUAACUUUGUUUUAAUUUCCUAAGGG--UUAACCUUCGUGUGCCCGUAUGGGAGAUGGUGCAAUGAUCAGUGAGACAUUU
X03372.1/207-451               UUGGGUGCAACAGUCUUUCUGUC--GUCUGUUUUU-----UAGCAGAUCUAAGGG--UUUACCUUCGUGUGCCCGGAUGAGGACCGUUGCAAGGAUUGAUAAUACAACU
#=GC SS_cons                   -------((((-((((((--(((..,<<<<<<___....._>>>>>>,,,,,<<<..<____________>>>>,)))))))))-))))----))))))))):::::::
#=GC RF                        UUGGGUGCagCagccCcuCuguc..GccugccuUu.....uggcaggUCUAAGGG..cUUACCUUCGUGUgCCCGgauggGggcuGcuGCAAuGAuCagccauACAuuu
//
