# STOCKHOLM 1.0
#=GF ID snR32
#=GF AC RF01247
#=GF DE Small nucleolar RNA snR32
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 45.0
#=GF NC 44.9
#=GF TC 45.0
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.00 -Z 2958934 CM SEQDB
#=GF DR snornadb; snR32;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Saccharomyces_cerevisiae300006;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 8265354
#=GF RT SnR31, snR32, and snR33: three novel, non-essential snRNAs from
#=GF RT Saccharomyces cerevisiae.
#=GF RA Balakin AG, Schneider GS, Corbett MS, Ni J, Fournier MJ
#=GF RL Nucleic Acids Res. 1993;21:5391-5397.
#=GF WK Small_nucleolar_RNA
#=GF SQ 11

U10398.3/28338-28525           AACAUCAUAAUUA-UAUCGC-GAAUGUACUACUAGUAUAUGCA-G-----UUU--UCUU-------AAAAUUGCA---GGG--AA--UGACUAAA-AGC-CCACGUUU------------UUCCCACUUU---UAGU----AGUAC-UGAAGCGUAGAUAGAUU-----GAACGUUGCUGGGCGCCUGGUGUUGAUCAUU
AABY01000073.1/24549-24361     AACAUCAUAAUUA-UAUCGC-GAAUGUACCACUACUCUAUGCA-GU----UUU--UCUU-------AAAAUUGCA---GGG--AA--UGGCUAAACAAU-CCAUACUU------------UUCCCACUUU---UAGU----AGUAC-UGAAGCGUAGAUAGAUU-----GAACGUUGCUGGGCGCCUGAUGUUGAUCAUU
AACH01000131.1/10994-11183     AACAUCAUAAUUA-UAUCGC-GAUUGUACCACUAGUAUAUGCAAC-----UUU--UCUU-------AAGAUUGUA---GGG--AA--AGGCUAAC-CGAACCAUACUU------------UUCCCAUUUU---AAGU----GGUAC-UAAAGCGUAGAUAGAAU-----GAACGUUGCUGGGCGCCUGAUGUUGAUUAUU
AACI02000057.1/7740-7551       AACAUCAUAAUUA-UAUCGC-GAAUGUACUACCACUACAUGCA-GCU---UUU--UCAU-------AAGGUUGCA---GGG--AA--UGGCUAAA-UGUUCUAUGUUU------------UUCCCAUUUU---UGGU----AGUGC-UGAAGCGUAGAUAGAUU-----GAACGUUGCUGGGCGCCUGAUGUUGAUCAUU
AACA01000258.1/7199-7388       AACAUCAUAAUAA-UAUCGC-GAAUGUACCACUAACAUAUGCA-GCU---UUU--UCUU-------AAAGUUGUA---GGG--AA--UGGCUAAAUAUU-CUAUGCUU------------UUCCCAUUUU---UAGU----AGUGC-UCAAGCGUAGAUAAAUU-----GAACGUUGCUGGGCGCCUGAUGUUGAUCGUU
AAZN01000029.1/18837-18636     AACAUCAUUUUUA-UAUCGCAGAUGCACUACCAAUUUAACUGA-UCUCACUUC--UUAU-------GAGUUUCAG---GAGAUGA--ACUCGAUUUUGU-UUCAAGGU------------UCCUCUUGGU---UUGG----UACUG-UUAAGCGUAGAUCAAAUAA---GAACGUUGCUGGGCGCCUGGUGCUGACCAUA
CR380953.1/573348-573145       AACAUCAUUUUUAUUAUCGC-CUGUGACAGUACUAUCAGGAGA-UU----GUGAUUCUUUAUGAAUUGCUUUUUCCAUGUG--GA---AAUAAUC-UUU-CAAUGUUU----------UUUCCCCAUAUC---GGUA----CUGUU-CGAAGCGUAGAUAGACUUAAA-GAACGUUGCUGGGCGCCUGGUGUUGA---UA
CR382124.1/668790-668986       AACAUCAAUAUUA-U--CGC----UCCACGGUUAUCCCUGUGU-A-----AGA--UUUC-------GUUCUGCGC---GGG--GACCGGGUUAUG-UGUUGUUCACUA-----------UUUCCUGGUUU---UAAUAAUUUGUGU-UGAAGCGUAGAUUUAAUACCAAGUACGUUGCUGGGCGCCUGAUAUUGAGUCAA
AACF01000039.1/56929-56724     AACAUCAUUUUUA-AAUCGC-CAAUGCAAUACCAUGAUAAGGG-UC----UUUUUUCUU----AAUUAAGAACCU---GAG--AG--AGAUUCAU-UUA-CUAUGUCUCUUUGAAAAAUACUUUCUUCUCGUUUGGU----AUUUG-UUUAGCGUAGAUUAAUA-----GAACGUUGCUGGGCGCCUGAUGUUGAUUCAA
AADM01000200.1/18092-17904     AACAUCAUUUUAA-C-UCGC-UCACACUGGUCCUAACUUUUAA-C------------AU------------UCAG---UGG--GG--AGAGACAC-UUC-ACGAGUCU------------CCUCAGGUUUUGCAGGG----CCGGUAAGAAGCGUAGAGAGAAUUCAA-GAGCGUUGCUGGGCGCCUGGCGUUGAUUUUC
AACE03000003.1/1021105-1021294 AACAUCAU--UUU-UAUCGC-UCACACUGACCCCAUACUC----------UUU--UUUU-------AGA-----G---AGG--GA--AGACGCAA-UUU-UCGAGUUC------------CUUCUGGUUU-UCGGGG----UCGGUAAGAAGCGUAGACAGAAUCUCAAGACCGUUGCUGGGCGCCUGAUGUUGAUUUUU
#=GC SS_cons                   :::::::::::::.:::(((.----(((((((((,,,,,<<<<.--....<<<..____.......>>>-->>>>...<<<..<<..-<<<____.___.____>>>-............>>>>>,,,,,...))))....))))).----)))::::::::::::...<<<<<----------<<--<<<<<--<<<<<
#=GC RF                        AACAUCAUuaUUA.UAUCGC.gaaugcacccccaauauacgga.uc....uuu..UcuU.......aaauUuccg...ggG..gg..aggcuaaa.uuu.cuaugccU............ccCccauuUU...uggg....ggugc.ugAAGCGUAGAUagAaUua...GAaCGUUGCUGGGCGCCUGguguuGAucauu

U10398.3/28338-28525           UCUGAAAUGA-----GAU--AUUGGGAAUCAGCUGUAUCUACAUUU
AABY01000073.1/24549-24361     U-UGAAAUGA-----GAU--AUUGGGAAUCAGCUGUAUCUACAUUU
AACH01000131.1/10994-11183     UUUAAAAUGA-----GAC--AUUGGGAAUCAGCUGUAUCUACAUUU
AACI02000057.1/7740-7551       U-UGAAAUGA-----GGU--AUUGGGAAUCAGCUGUAUCUACAUUU
AACA01000258.1/7199-7388       UC-GAAAUGA-----AAU--AUUGGGAAUCAGCUGUAUCUACAUUU
AAZN01000029.1/18837-18636     U--UGUAUGGGUUGAGGC--AUUGGGAAUCAGCUGUAUCUAUAUCU
CR380953.1/573348-573145       UCUUACAUGA-----GAU--ACUGGGAAUCAGCUGUAUCUACAUCU
CR382124.1/668790-668986       UUUGAUU-AU-----GAUCUAUUGGGAAUCAGCUGUAUCUACAUUU
AACF01000039.1/56929-56724     UAUAU---GA-----GAC--AUUGGGAAUCAGCUGUAUCCACAUUU
AADM01000200.1/18092-17904     U-UCGGAAAAGAUGAGAC--UCUGGGAAUCAGCUGUUUCUACAUAU
AACE03000003.1/1021105-1021294 UUCAUAAAAAGAGGAUAC--AUUUGGAAUCAGCUGUUUCUACAAUU
#=GC SS_cons                   _____>>>>>.....>>>..>>-->>------->>>->>:::::::
#=GC RF                        UuUaaaauga.....gac..acUGGGAAUCAGCUGuAUCUACAUuU
//
