# STOCKHOLM 1.0
#=GF ID snoR111
#=GF AC RF01228
#=GF DE Small nucleolar RNA snoR111
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 38.0
#=GF NC 37.9
#=GF TC 38.3
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.87 -Z 2958934 CM SEQDB
#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300017;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 12477388
#=GF RT Experimental RNomics: identification of 140 candidates for small
#=GF RT non-messenger RNAs in the plant Arabidopsis thaliana.
#=GF RA Marker C, Zemann A, Terhorst T, Kiefmann M, Kastenmayer JP, Green P,
#=GF RA Bachellerie JP, Brosius J, Huttenhofer A
#=GF RL Curr Biol. 2002;12:2002-2013.
#=GF WK Small_nucleolar_RNA
#=GF SQ 6

AJ505682.1/1-130             AAAAUGGGGCAAGAGA-GAGUAACGGUGUCUCUGAGUCCUUGAUGAACCGGCGAGGGAAAUCAAUCU-----GGCCGAGAUAUCGUUUCAGUCGUUCUUUGUUUUGGUUUACGAUCUGAUUGUUGCUCGUCCACAU
AARH01010739.1/167276-167404 UCAAUGGGAUGAGAGACGGAUAC-AGUGUCUCUUUCGCUCGAAAGAA---CAGAGGUAGAACAAAUGUAA-UGGCCGAGAUAUCGUUUCAGUCGUCAUUCUUU--GAUUGACGAUUCGAUUGUUGCUCGUCCACAU
AASG02008398.1/9109-8983     ---AUGAAGGGACAGG-AAUUAGGAAUGUCUCUUUGUCUGGAACAGA---GGGAGGUAUAUCAAUUUCGGUAGGCCGAGAUAUCGUUUCAGUCGUCAUU--CUUCCAUUGACGAUUCGAUUGUUGCUCGUCCACAU
AM485814.2/5099-4974         --AA---AAUGAGAGACGAAUGUGAAUGUCUCGUCAUUGAUAACAAG---AGGAGGUAGAGAGAACGGAA-AGGC-GAGAUAUCGUUUCAGUCGUCAUUUCUCUGGAUUGGCGAUUCGAUUGUUGCUCGUCUACAU
AC162440.26/27224-27101      CAGAAUGAUGAAGAGACCAUUAA-UUUGUCUCCGCCGUCGUUUUAACA--UUGAGGUAUAACAA--------CGCCGAGUCAUCGUUUCGAUCGUCAUUUGUUUCG-UUGGCGAUACGAUUGUUUCUCGUCUACAA
AP008240.1/7403-7525         GUGUUAAUGGU-GAGACUGUUGAAAGUGUCUU--ACCGUUGUGAAUA---UUGAGGCAUAUCGAAUC-----GGC-GAGUCAUCGUUUCGGUCGUCCUUUGUUU-GGUUGGCGAUACGAUUGUUACUCUUCUACAU
#=GC SS_cons                 :::::<<<<<<-<<<<<<________>>>>>>-->>>>>>:::::::...:::::::::::::::::.....<<-<<<<--<<<<-----<<<<<<<-<<_____>>->>>>>>>->>>>----->>>>->>::::
#=GC RF                      uaaAuggggggAgAGaCgauUaaaagcGuCUcuuccccccuaauaaa...uuGAGGuAuAucaAauu.....gGCCGAGauAUCGUUUCagUCGucaUuugUUUugaUugaCGAuuCGAUUGUUgCUCGUCcACAU
//
