# STOCKHOLM 1.0
#=GF ID snoU6-47
#=GF AC RF01221
#=GF DE Small nucleolar RNA U6-47
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 54.0
#=GF NC 52.5
#=GF TC 56.5
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 2958934 CM SEQDB
#=GF DR URL; http://snoopy.med.miyazaki-u.ac.jp/view.cgi?id=CEL30005;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 16714446
#=GF RT Evolution of small nucleolar RNAs in nematodes.
#=GF RA Zemann A, op de Bekke A, Kiefmann M, Brosius J, Schmitz J
#=GF RL Nucleic Acids Res. 2006;34:2676-2685.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

AAGD02011855.1/9652-9519 AAGCAAUGAAGAGUAAUUUGA-CACGAAA-------------UGGCGUCAUAUCGUUGACACUCCAAAAAAGACUGCAAAUUCCAAU---UCGUUUCGGAAUACAGUCCGUCGACGAG-AUGGGCGAUCGUCUAAUCUUCUCUCUGAGCUUU
FO080775.1/3726-3608     CAGCUAUGACGAGUUCUUG----ACGACA-------------UGACGUCA--UCACUGACAAUUAAAGAUAG---------UUCCCU---UCGUUCGGGUUGACUAUC-GUCGGAGAU-GUGGACGAGCGCCUAAUCUUCUCUCUGAGCUGU
ABEG02000242.1/3587-3450 AUGCGAUGAAGAGACUGAUGAUCACGAAAAC---------CCUGACGUCUUAUCAUUGACACCUAAAGAC--CCAUCGGAUUCCGAA---UCGUUAGGAAAACGGGGUCGUCGAUGAGUGUGGGCGAGCGACUAAUCUUCUCUCUGAGCAUU
DQ789438.1/2-142         GAGCAAUGACGAUUUUCGAUU-CACAAAACGGUUUAGCAUCAGGACACAAAGUGCUCGUCACUUUGUAACAG--------UUUCCAGUCGUCGUUUGGCAGAAACCGU-UUUGAUGAU-GUGACCGAGCGACUAAUCUUCUCUCUGAGCUCA
DQ789550.1/1-116         GAGCAAUGACGAUUCUUGU---CACGA-------------------GUCGUAUCAUCGAAGCGCAUAGUU----UUUGGCUGUCGUU---UAGAGC----UGAAAAUGUUUCGACGGC-GUGAUCGAUUGACUAAUCUUCUCUCUGAGCU--
#=GC SS_cons             <<<<_________________._______.............______________________________.._____________...____________________________.____________________________>>>>:
#=GC RF                  gaGCaAUGAcGAgUuuuuuga.CACGAAA.............uGACGUCaUAUCaUuGACACuuaaAgAuAG..uucggaUUuCgau...UCGUUugGgAaaAaaauucgUCGAuGAu.GUGguCGAgCGaCUAAUCUUCUCUCUGAGCucu
//
