# STOCKHOLM 1.0
#=GF ID snoR20a
#=GF AC RF01193
#=GF DE Small nucleolar RNA snoR20a
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 42.0
#=GF NC 41.9
#=GF TC 42.0
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 2958934 CM SEQDB
#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 12520043
#=GF RT Plant snoRNA database.
#=GF RA Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A,
#=GF RA Kastenmayer JP, Green PJ, Shaw P, Marshall DF
#=GF RL Nucleic Acids Res. 2003;31:432-435.
#=GF RN [2]
#=GF RM 12736310
#=GF RT The high diversity of snoRNAs in plants: identification and comparative
#=GF RT study of 120 snoRNA genes from Oryza sativa.
#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
#=GF RL Nucleic Acids Res. 2003;31:2601-2613.
#=GF CC This family is based on the Oryza sativum homolog of Arabidposis thaliana
#=GF CC snoR20 (which is included in model RF00351). The O.sativum sequence was
#=GF CC obtained from the plant snoRNA database. The name originally given to the
#=GF CC O.sativum homolog in PMID:12736310 is Z160a.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

AJ490367.1/4-94            GCCUUU-GAUGACAUGAUGGUUUCAGAACUGGCACACA-UCGUUGUUGCCAGAGCUAUGUUGAUAUUGCU-CAUGAACUAGGACGGUCUGAGGC
AARH01002868.1/80604-80517 GCCUAU-GAUGACAAACUUGAGUUUCACUGAAAGCAAG-UCAAUGAAUUUGCAUAAUUGUUGAAAUU----CAUGAACUAGGACGGUCUGAGGC
AM450475.1/12728-12644     GCCUAU-GAUGAUA-GUUUGAAUAUUAACUGAAAUGCA-AAAGCAUUUGCA--UUCAUGUUGAAAUU----CAUGAACUAGGACGGUCUGAGGC
AASG02000099.1/88593-88520 GCCAUU-GAUGACU-GUUUGUUUUUCAACUGAAAC------------------UAAAUGUUGAAAUUAUUAUACGAACUAGGACGGUCUGAGGC
AAAA02009241.1/11429-11518 GCCAACACAUGAUA---AGGUUUCAGAAUUAGCAUACAGUUGUUGUUUCUGGAGCUUUGUUGAUACUAAU-UAUGAACUAGGAUGGUCUGAGGC
#=GC SS_cons               <<<___._______._______________________._______________________________.____________________>>>
#=GC RF                    GCCuaU.GAUGAcA.GuUuGuuUuuuAAcUgaaAcAcA.UcauUGuuUuuagAuauaUGUUGAaAUUauU.cAUGAACUAGGACGGUCUGAGGC
//
