INFERNAL1/a [1.1.5 | Sep 2023] NAME snoU43 ACC RF01174 DESC Small nucleolar RNA U43 STATES 241 NODES 81 CLEN 79 W 162 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 18:48:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01174/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 3.612061 CKSUM 3451105893 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.10 NC 44.70 EFP7GF -7.8470 0.71859 ECMLC 0.56658 -10.48771 0.10089 1600000 483782 0.002480 ECMGC 0.40491 -14.76208 -2.15890 1600000 65819 0.006077 ECMLI 0.46174 -8.98712 3.23617 1600000 339107 0.003539 ECMGI 0.48279 -5.18659 4.72992 1600000 48005 0.008332 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 162 246 -7.511 -7.718 -0.036 -6.133 IL 1 1 2 1 4 5 35 164 248 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 35 163 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 5 34 162 246 -5.861 -0.051 -5.861 1.432 -1.844 -0.571 -1.517 D 4 2 3 5 3 1 30 159 243 -11.551 -1.585 -0.585 IL 5 5 3 5 3 6 36 168 253 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 5 34 161 244 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 7 5 3 8 3 1 29 158 241 -11.551 -1.585 -0.585 IL 8 8 3 8 3 6 35 167 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 4 33 159 243 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 10 8 3 11 3 1 29 156 240 -11.551 -1.585 -0.585 IL 11 11 3 11 3 6 35 166 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 4 32 158 242 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 13 11 3 14 3 0 28 155 238 -11.551 -1.585 -0.585 IL 14 14 3 14 3 5 34 165 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 4 31 157 240 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 16 14 3 17 3 0 27 154 237 -11.551 -1.585 -0.585 IL 17 17 3 17 3 5 33 163 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 3 30 156 239 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 19 17 3 20 3 0 26 153 236 -11.551 -1.585 -0.585 IL 20 20 3 20 3 4 32 162 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 3 29 154 237 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 22 20 3 23 3 0 26 151 234 -11.551 -1.585 -0.585 IL 23 23 3 23 3 4 31 161 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 2 29 153 236 -5.861 -0.051 -5.861 -0.352 -0.955 0.373 0.492 D 25 23 3 26 3 0 25 150 233 -11.551 -1.585 -0.585 IL 26 26 3 26 3 3 30 159 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 28 152 235 -5.861 -0.216 -3.035 -0.184 -0.909 -0.260 0.809 D 28 26 3 29 3 0 25 149 232 -11.551 -1.585 -0.585 IL 29 29 3 29 3 3 30 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - a - - - ML 30 29 3 32 3 2 28 151 233 -2.909 -0.239 -5.701 0.917 -1.011 -1.032 0.172 D 31 29 3 32 3 0 24 148 231 -13.150 -1.265 -0.777 IL 32 32 3 32 3 3 28 151 233 -4.952 -0.048 -12.596 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - a - - - ML 33 32 3 35 3 2 27 150 232 -5.776 -0.054 -5.776 0.306 0.060 -0.871 0.233 D 34 32 3 35 3 0 23 146 229 -12.623 -2.657 -0.249 IL 35 35 3 35 3 3 28 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - a - - - ML 36 35 3 38 3 2 26 148 231 -3.718 -0.143 -5.776 0.906 -0.568 -0.325 -0.615 D 37 35 3 38 3 0 23 146 228 -12.623 -2.657 -0.249 IL 38 38 3 38 3 3 27 149 232 -0.970 -1.031 -12.686 0.000 0.000 0.000 0.000 [ MATL 13 ] 16 - g - - - ML 39 38 3 41 3 1 25 147 230 -2.758 -0.262 -5.776 -0.279 -0.124 0.293 0.047 D 40 38 3 41 3 0 22 145 228 -12.623 -0.550 -1.657 IL 41 41 3 41 3 2 25 147 230 -5.203 -0.040 -12.846 0.000 0.000 0.000 0.000 [ MATL 14 ] 18 - U - - - ML 42 41 3 44 3 1 24 146 229 -5.861 -0.163 -3.484 -2.250 -1.821 -2.432 1.732 D 43 41 3 44 3 0 21 143 226 -11.551 -1.585 -0.585 IL 44 44 3 44 3 2 26 153 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 19 - a - - - ML 45 44 3 47 3 1 24 145 227 -5.753 -0.055 -5.753 0.653 -0.995 -1.028 0.522 D 46 44 3 47 3 0 20 143 225 -12.813 -0.470 -1.847 IL 47 47 3 47 3 1 25 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 20 - a - - - ML 48 47 3 50 3 1 23 143 226 -5.861 -0.051 -5.861 0.367 -0.942 0.230 0.024 D 49 47 3 50 3 0 18 140 222 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 24 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 21 - A - - - ML 51 50 3 53 3 1 22 142 224 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 52 50 3 53 3 0 17 139 221 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 24 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 22 - A - - - ML 54 53 3 56 3 1 21 141 223 -5.861 -0.051 -5.861 1.332 -1.392 -1.457 -0.439 D 55 53 3 56 3 0 17 138 220 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 23 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - a - - - ML 57 56 3 59 3 1 21 140 221 -5.861 -0.051 -5.861 0.375 -0.455 -0.267 0.192 D 58 56 3 59 3 0 16 136 218 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 22 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - a - - - ML 60 59 3 62 3 1 20 138 220 -5.861 -0.051 -5.861 0.506 -0.911 -0.036 0.101 D 61 59 3 62 3 0 15 135 217 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 21 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - U - - - ML 63 62 3 65 3 1 19 137 219 -5.861 -0.051 -5.861 -0.183 -1.176 -1.325 1.188 D 64 62 3 65 3 0 15 134 215 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 21 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - U - - - ML 66 65 3 68 3 1 18 136 217 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 67 65 3 68 3 0 14 132 214 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 20 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - U - - - ML 69 68 3 71 3 1 18 134 216 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 70 68 3 71 3 0 13 131 212 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 19 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - A - - - ML 72 71 3 74 3 1 17 133 214 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 73 71 3 74 3 0 13 130 211 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 18 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - U - - - ML 75 74 3 77 3 1 16 132 213 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 76 74 3 77 3 0 12 129 209 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 18 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - G - - - ML 78 77 3 80 3 1 15 130 211 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 79 77 3 80 3 0 11 127 208 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 17 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - G - - - ML 81 80 3 83 3 1 15 129 210 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 82 80 3 83 3 0 11 126 206 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 16 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - U - - - ML 84 83 3 86 3 1 14 128 208 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 85 83 3 86 3 0 10 124 205 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 15 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - U - - - ML 87 86 3 89 3 1 13 126 207 -5.861 -0.158 -3.530 -2.250 -1.821 -2.432 1.732 D 88 86 3 89 3 0 9 123 203 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 15 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - A - - - ML 90 89 3 92 3 1 13 125 206 -5.757 -0.054 -5.757 1.250 -1.247 -1.285 -0.340 D 91 89 3 92 3 0 9 121 201 -12.780 -2.814 -0.222 IL 92 92 3 92 3 1 14 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - G - - - ML 93 92 3 95 3 1 12 124 204 -5.757 -0.054 -5.757 -1.232 -1.715 1.413 -0.722 D 94 92 3 95 3 0 9 120 200 -12.780 -2.814 -0.222 IL 95 95 3 95 3 1 13 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - A - - - ML 96 95 3 98 3 1 11 123 203 -5.757 -0.054 -5.757 1.793 -2.659 -2.389 -2.428 D 97 95 3 98 3 0 8 120 199 -12.780 -2.814 -0.222 IL 98 98 3 98 3 1 13 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - A - - - ML 99 98 3 101 3 1 10 121 201 -5.757 -0.149 -3.650 1.311 -1.310 -1.349 -0.469 D 100 98 3 101 3 0 8 119 199 -12.780 -0.483 -1.814 IL 101 101 3 101 3 1 12 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - c - - - ML 102 101 3 104 3 1 9 120 200 -5.776 -0.054 -5.776 -0.119 0.799 -1.080 -0.207 D 103 101 3 104 3 0 7 118 197 -12.623 -0.550 -1.657 IL 104 104 3 104 3 1 11 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - A - - - ML 105 104 3 107 3 1 9 119 198 -5.861 -0.159 -3.525 1.024 -0.593 -1.072 -0.273 D 106 104 3 107 3 0 5 115 195 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 11 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - c - - - ML 108 107 3 110 3 1 8 117 197 -5.757 -0.054 -5.757 -0.400 0.827 -1.111 0.007 D 109 107 3 110 3 0 5 114 193 -12.783 -2.817 -0.221 IL 110 110 3 110 3 1 10 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - A - - - ML 111 110 3 113 3 1 8 116 195 -5.757 -0.236 -2.920 1.110 -1.477 0.037 -1.129 D 112 110 3 113 3 0 5 113 192 -12.783 -2.817 -0.221 IL 113 113 3 113 3 1 9 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - u - - - ML 114 113 3 116 3 1 7 115 194 -5.583 -0.061 -5.583 -0.056 -0.259 -0.809 0.706 D 115 113 3 116 3 0 4 113 192 -13.688 -0.237 -2.722 IL 116 116 3 116 3 1 9 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - a - - - ML 117 116 3 119 3 1 7 113 192 -5.861 -0.051 -5.861 0.806 0.371 -1.280 -0.870 D 118 116 3 119 3 0 2 110 189 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 8 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - U - - - ML 120 119 3 122 3 1 6 112 191 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 121 119 3 122 3 0 1 109 187 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - G - - - ML 123 122 3 125 3 1 5 111 189 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 124 122 3 125 3 0 1 107 186 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 6 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - A - - - ML 126 125 3 128 3 1 4 109 188 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 127 125 3 128 3 0 0 106 184 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - u - - - ML 129 128 3 131 3 1 4 108 186 -5.861 -0.051 -5.861 0.359 -1.085 -1.151 0.845 D 130 128 3 131 3 0 0 105 183 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 5 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - - - ML 132 131 3 134 3 1 3 106 184 -5.861 -0.051 -5.861 -0.604 -0.250 -1.186 1.044 D 133 131 3 134 3 0 0 104 181 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 4 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 135 134 3 137 3 1 2 105 183 -5.861 -0.163 -3.484 1.332 -1.392 -1.457 -0.439 D 136 134 3 137 3 0 0 103 180 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - A - - - ML 138 137 3 140 3 1 2 104 181 -3.724 -0.143 -5.753 1.791 -2.647 -2.378 -2.417 D 139 137 3 140 3 0 0 102 180 -12.813 -0.470 -1.847 IL 140 140 3 140 3 1 3 104 181 -4.063 -0.089 -11.707 0.000 0.000 0.000 0.000 [ MATL 47 ] 52 - C - - - ML 141 140 3 143 3 1 2 103 180 -5.861 -0.051 -5.861 -1.938 1.486 -2.164 -0.485 D 142 140 3 143 3 0 0 99 177 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 53 - C - - - ML 144 143 3 146 3 1 2 101 179 -5.861 -0.051 -5.861 -2.010 1.535 -2.242 -0.640 D 145 143 3 146 3 0 0 98 175 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 3 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 54 - g - - - ML 147 146 3 149 3 1 1 100 177 -5.861 -0.051 -5.861 -0.432 -1.130 0.835 0.027 D 148 146 3 149 3 0 0 96 173 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - U - - - ML 150 149 3 152 3 1 1 98 175 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 151 149 3 152 3 0 0 95 172 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - G - - - ML 153 152 3 155 3 1 1 97 174 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 154 152 3 155 3 0 0 94 170 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - A - - - ML 156 155 3 158 3 1 1 95 172 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 157 155 3 158 3 0 0 92 168 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - U - - - ML 159 158 3 161 3 1 1 94 170 -5.861 -0.051 -5.861 -0.959 -0.474 -0.559 1.061 D 160 158 3 161 3 0 0 91 167 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 59 - u - - - ML 162 161 3 164 3 1 1 93 169 -5.861 -0.051 -5.861 -1.041 -1.141 0.164 0.956 D 163 161 3 164 3 0 0 89 165 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - - - ML 165 164 3 167 3 1 1 91 167 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 166 164 3 167 3 0 0 88 163 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - U - - - ML 168 167 3 170 3 1 1 90 165 -3.009 -0.220 -5.861 -0.313 -1.208 -1.385 1.250 D 169 167 3 170 3 0 0 86 162 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 2 91 166 -0.984 -1.016 -13.633 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - c - - - ML 171 170 3 173 3 1 1 88 164 -1.654 -0.588 -5.861 0.117 0.742 -1.118 -0.355 D 172 170 3 173 3 0 0 84 160 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 2 89 165 -0.953 -1.048 -15.145 0.000 0.000 0.000 0.000 [ MATL 58 ] 69 - U - - - ML 174 173 3 176 3 1 1 86 162 -5.861 -0.051 -5.861 -0.087 -1.154 -1.284 1.136 D 175 173 3 176 3 0 0 83 158 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 70 - u - - - ML 177 176 3 179 3 1 1 85 160 -5.861 -0.051 -5.861 0.150 -0.328 -0.945 0.655 D 178 176 3 179 3 0 0 81 157 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 71 - a - - - ML 180 179 3 182 3 1 1 83 159 -5.861 -0.051 -5.861 0.762 -1.094 -1.137 0.465 D 181 179 3 182 3 0 0 80 155 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 72 - a - - - ML 183 182 3 185 3 1 1 82 157 -5.861 -0.051 -5.861 0.916 -1.127 -1.171 0.277 D 184 182 3 185 3 0 0 78 153 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 73 - C - - - ML 186 185 3 188 3 1 1 80 155 -5.861 -0.051 -5.861 -2.516 1.761 -2.746 -1.806 D 187 185 3 188 3 0 0 77 151 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 74 - U - - - ML 189 188 3 191 3 1 1 79 153 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 190 188 3 191 3 0 0 75 149 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 75 - A - - - ML 192 191 3 194 3 1 1 77 152 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 193 191 3 194 3 0 0 73 147 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 76 - G - - - ML 195 194 3 197 3 1 1 76 150 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 196 194 3 197 3 0 0 72 146 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 77 - G - - - ML 198 197 3 200 3 1 1 74 148 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 199 197 3 200 3 0 0 70 144 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 78 - G - - - ML 201 200 3 203 3 1 1 72 146 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 202 200 3 203 3 0 0 68 142 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 79 - C - - - ML 204 203 3 206 3 1 1 71 144 -5.861 -0.051 -5.861 -2.516 1.761 -2.746 -1.806 D 205 203 3 206 3 0 0 67 139 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 79 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 80 - G - - - ML 207 206 3 209 3 1 1 69 142 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 208 206 3 209 3 0 0 65 137 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 81 - G - - - ML 210 209 3 212 3 1 1 67 140 -5.861 -0.051 -5.861 -0.746 -2.330 1.563 -1.998 D 211 209 3 212 3 0 0 63 135 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 82 - a - - - ML 213 212 3 215 3 1 1 65 138 -5.861 -0.051 -5.861 0.916 -1.127 -1.171 0.277 D 214 212 3 215 3 0 0 61 133 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 83 - C - - - ML 216 215 3 218 3 1 1 63 135 -5.861 -0.051 -5.861 -2.516 1.761 -2.746 -1.806 D 217 215 3 218 3 0 0 59 130 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 84 - U - - - ML 219 218 3 221 3 1 1 61 133 -5.861 -0.051 -5.861 -2.250 -1.821 -2.432 1.732 D 220 218 3 221 3 0 0 57 128 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 85 - G - - - ML 222 221 3 224 3 1 1 59 131 -5.861 -0.051 -5.861 -2.177 -3.108 1.817 -2.832 D 223 221 3 224 3 0 0 55 125 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 86 - A - - - ML 225 224 3 227 3 1 1 57 128 -5.861 -0.051 -5.861 1.830 -2.931 -2.647 -2.710 D 226 224 3 227 3 0 0 52 122 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 87 - u - - - ML 228 227 3 230 3 1 1 55 125 -5.861 -0.051 -5.861 -1.430 0.555 -1.618 0.875 D 229 227 3 230 3 0 0 49 118 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 88 - U - - - ML 231 230 3 233 3 1 1 52 122 -5.861 -0.051 -5.861 -0.470 -0.311 -1.132 1.011 D 232 230 3 233 3 0 0 44 113 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 89 - u - - - ML 234 233 3 236 3 1 1 48 117 -5.861 -0.051 -5.861 0.392 -0.584 -0.952 0.589 D 235 233 3 236 3 0 0 32 101 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 90 - a - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 0.354 -0.902 0.026 0.225 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoU43 ACC RF01174 DESC Small nucleolar RNA U43 LENG 79 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 18:48:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01174/CM NSEQ 11 EFFN 3.612061 CKSUM 3451105893 STATS LOCAL MSV -9.1969 0.71859 STATS LOCAL VITERBI -9.6616 0.71859 STATS LOCAL FORWARD -3.2288 0.71859 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19566 1.80585 1.44321 1.21405 1.38629 1.38629 1.38629 1.38629 0.02036 5.20655 4.22137 0.39730 1.11515 0.00000 * 1 0.39343 2.66467 1.78194 2.43812 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 2 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 3 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 4 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 5 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 6 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 7 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 8 1.63037 2.04847 1.12787 1.04557 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 9 1.51385 2.01616 1.56667 0.82546 - u - - : 1.38629 1.38629 1.38629 1.38629 0.14991 4.06252 2.10367 1.46634 0.26236 1.09861 0.40547 10 0.75087 2.08720 2.10132 1.26686 - a - - : 1.38629 1.38629 1.38629 1.38629 0.16533 2.01613 3.95181 0.03285 3.43217 0.87658 0.53820 11 1.17450 1.34500 1.99013 1.22482 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03717 4.00393 4.00393 1.46634 0.26236 1.84173 0.17262 12 0.75810 1.78003 1.61176 1.81232 - a - - : 1.38629 1.38629 1.38629 1.38629 0.09897 2.57719 4.00393 0.71462 0.67213 1.84173 0.17262 13 1.57981 1.47193 1.18337 1.35379 - g - - : 1.38629 1.38629 1.38629 1.38629 0.18162 1.91162 4.00393 0.02754 3.60599 0.38139 1.14858 14 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.11272 4.06252 2.41474 1.46634 0.26236 1.09861 0.40547 15 0.93388 2.07603 2.09869 1.02463 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03779 3.98760 3.98760 1.46634 0.26236 0.32567 1.28030 16 1.13195 2.03907 1.22699 1.36935 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 17 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 18 0.46312 2.35093 2.39647 1.69084 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 19 1.12641 1.70183 1.57105 1.25307 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 20 1.03531 2.01782 1.41110 1.31653 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 21 1.51335 2.20127 2.30488 0.56318 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 22 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 23 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 24 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 25 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 26 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 27 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 28 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 29 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.10954 4.06252 2.44702 1.46634 0.26236 1.09861 0.40547 30 0.51994 2.25045 2.27694 1.62206 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03768 3.99065 3.99065 1.46634 0.26236 1.95024 0.15343 31 2.24005 2.57528 0.40666 1.88686 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03768 3.99065 3.99065 1.46634 0.26236 1.95024 0.15343 32 0.14357 3.22933 3.04256 3.06959 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03768 3.99065 3.99065 1.46634 0.26236 1.95024 0.15343 33 0.47746 2.29413 2.32101 1.71137 - A - - : 1.38629 1.38629 1.38629 1.38629 0.10328 3.99065 2.53032 1.46634 0.26236 0.33475 1.25709 34 1.46881 0.83240 2.13504 1.52991 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03717 4.00393 4.00393 1.46634 0.26236 0.38139 1.14858 35 0.67650 1.79704 2.12936 1.57550 - A - - : 1.38629 1.38629 1.38629 1.38629 0.10989 4.06252 2.44348 1.46634 0.26236 1.09861 0.40547 36 1.66387 0.81274 2.15671 1.38131 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03769 3.99032 3.99032 1.46634 0.26236 1.95278 0.15301 37 0.61722 2.40982 1.36090 2.16896 - A - - : 1.38629 1.38629 1.38629 1.38629 0.16328 3.99032 2.02379 1.46634 0.26236 1.95278 0.15301 38 1.42537 1.56580 1.94678 0.89667 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04263 3.86967 3.86967 1.46634 0.26236 0.16438 1.88662 39 0.82769 1.12938 2.27333 1.98968 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 40 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 41 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 42 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 43 1.13767 2.13809 2.18400 0.80081 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 44 1.80487 1.55924 2.20850 0.66292 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 45 0.46312 2.35093 2.39647 1.69084 - A - - : 1.38629 1.38629 1.38629 1.38629 0.11272 4.06252 2.41474 1.46634 0.26236 1.09861 0.40547 46 0.14480 3.22137 3.03493 3.06136 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09896 2.58124 3.98760 0.06173 2.81573 0.32567 1.28030 47 2.72986 0.35622 2.88638 1.72217 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 48 2.77976 0.32210 2.94022 1.82968 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 49 1.68590 2.16957 0.80778 1.36787 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 50 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 51 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 52 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 53 2.05133 1.71490 1.77352 0.65062 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 54 2.10755 2.17719 1.27261 0.72360 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 55 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 56 1.60295 2.22382 2.34658 0.51952 - U - - : 1.38629 1.38629 1.38629 1.38629 0.15250 2.08560 4.06252 0.70423 0.68218 1.09861 0.40547 57 1.30522 0.87185 2.16094 1.63224 - c - - : 1.38629 1.38629 1.38629 1.38629 0.40775 1.14681 4.06252 0.72662 0.66075 1.09861 0.40547 58 1.44630 2.18587 2.27636 0.59871 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 59 1.28243 1.61348 2.04146 0.93241 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 60 0.85786 2.14447 2.17426 1.06390 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 61 0.75166 2.16765 2.19774 1.19430 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 62 3.13053 0.16538 3.28996 2.63841 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 63 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 64 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 65 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 66 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 67 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 68 3.13053 0.16538 3.28996 2.63841 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 69 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 70 1.90368 3.00113 0.30294 2.77086 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 71 0.75166 2.16765 2.19774 1.19430 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 72 3.13053 0.16538 3.28996 2.63841 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 73 2.94565 2.64862 3.07176 0.18592 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 74 2.89549 3.54044 0.12714 3.34912 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 75 0.11755 3.41790 3.22108 3.26473 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 76 2.37775 1.00130 2.50801 0.78000 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 77 1.71216 1.60200 2.17089 0.68527 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 78 1.11491 1.79100 2.04585 0.97819 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03502 4.06252 4.06252 1.46634 0.26236 1.09861 0.40547 79 1.14107 2.01162 1.36810 1.23045 - a - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //