INFERNAL1/a [1.1.5 | Sep 2023] NAME sn2317 ACC RF01165 DESC Small nucleolar RNA sn2317 STATES 214 NODES 69 CLEN 70 W 101 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 17:44:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01165/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.972656 CKSUM 1491642965 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.20 NC 44.20 EFP7GF -8.3706 0.71883 ECMLC 0.64909 -5.79731 3.09043 1600000 384232 0.003123 ECMGC 0.40970 -13.53422 -0.04430 1600000 100538 0.003979 ECMLI 0.59596 -3.98547 4.96870 1600000 249290 0.004814 ECMGI 0.43669 -7.87408 3.88789 1600000 68039 0.005879 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 101 141 -6.966 -7.173 -0.053 -5.587 IL 1 1 2 1 4 1 29 104 143 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 103 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 28 101 141 -8.370 -0.018 -6.688 -0.321 -0.194 -0.381 0.639 D 4 2 3 5 3 0 23 100 139 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 27 102 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - A - - MR 6 5 3 8 5 1 27 100 140 -7.108 -0.039 -6.923 -7.135 -8.027 1.075 -1.084 -1.149 -0.044 D 7 5 3 8 5 0 21 99 138 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 25 100 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 78 G C - - MP 9 8 3 13 6 2 27 99 139 -9.114 -9.053 -0.021 -7.830 -8.110 -8.505 -4.778 -3.111 -4.880 0.176 -5.283 -4.708 -0.639 -5.126 -4.351 3.647 -4.686 -0.811 -1.023 -4.491 -2.678 -3.756 ML 10 8 3 13 6 1 23 98 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 21 97 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 18 94 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 24 99 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 24 98 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 77 U A - - MP 15 14 6 19 6 2 25 97 137 -9.114 -9.053 -0.021 -7.830 -8.110 -8.505 -4.233 -4.059 -4.067 -0.351 -3.000 -4.627 1.330 -3.698 -4.071 -0.104 -4.442 -1.957 3.348 -4.383 -0.675 -2.891 ML 16 14 6 19 6 1 22 96 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 20 95 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 18 93 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 23 97 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 23 96 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 76 C G - - MP 21 20 6 25 4 2 24 95 135 -6.966 -7.173 -0.053 -5.587 -4.591 -4.500 -4.274 -0.728 -2.982 -4.680 3.564 -3.797 -4.324 -0.494 -4.581 -2.448 0.528 -4.657 -0.690 -3.163 ML 22 20 6 25 4 1 21 94 134 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 18 94 133 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 17 93 132 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 22 96 135 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 22 95 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - A - - - ML 27 26 6 29 3 1 22 93 133 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 28 26 6 29 3 0 16 91 131 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 21 94 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 30 29 3 32 3 1 21 92 132 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 31 29 3 32 3 0 16 90 130 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 20 93 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - U - - - ML 33 32 3 35 3 1 21 91 131 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 34 32 3 35 3 0 15 89 129 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 20 92 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 36 35 3 38 3 1 20 90 130 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 37 35 3 38 3 0 14 88 128 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 19 91 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 39 38 3 41 3 1 19 89 129 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 40 38 3 41 3 0 14 87 127 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 18 90 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 42 41 3 44 3 1 19 88 128 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 43 41 3 44 3 0 13 86 126 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 17 89 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 45 44 3 47 3 1 18 87 127 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 46 44 3 47 3 0 12 85 125 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 17 88 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 48 47 3 50 3 1 17 86 126 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 49 47 3 50 3 0 11 84 124 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 16 87 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - C - - - ML 51 50 3 53 3 1 16 85 125 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 52 50 3 53 3 0 11 83 123 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 15 86 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - C - - - ML 54 53 3 56 3 1 16 84 124 -7.981 -0.020 -6.635 -0.880 1.003 -1.691 0.192 D 55 53 3 56 3 0 10 82 122 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 15 85 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - U - - - ML 57 56 3 59 3 1 15 83 123 -7.981 -0.020 -6.635 -0.025 -0.881 -1.252 1.039 D 58 56 3 59 3 0 9 81 120 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 84 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 60 59 3 62 3 1 14 82 122 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 61 59 3 62 3 0 9 79 119 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 83 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - A - - - ML 63 62 3 65 3 1 14 81 121 -2.916 -0.222 -6.635 1.726 -2.405 -2.033 -1.950 D 64 62 3 65 3 0 8 75 115 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 85 124 -0.671 -1.517 -5.469 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - u - - - ML 66 65 3 68 3 1 13 68 91 -7.981 -0.020 -6.635 0.563 -0.855 -1.060 0.576 D 67 65 3 68 3 0 8 67 89 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 70 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - C - - - ML 69 68 3 71 3 1 12 67 90 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 70 68 3 71 3 0 7 66 88 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 69 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - U - - - ML 72 71 3 74 3 1 12 66 89 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 73 71 3 74 3 0 6 65 87 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - A - - - ML 75 74 3 77 3 1 11 65 88 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 76 74 3 77 3 0 6 64 86 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 67 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - C - - - ML 78 77 3 80 3 1 11 64 87 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 79 77 3 80 3 0 5 63 85 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 66 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - G - - - ML 81 80 3 83 3 1 10 63 86 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 82 80 3 83 3 0 4 62 84 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 65 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - A - - - ML 84 83 3 86 3 1 9 62 85 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 85 83 3 86 3 0 4 61 83 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 64 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 87 86 3 89 3 1 9 61 84 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 88 86 3 89 3 0 4 60 82 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 63 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - U - - - ML 90 89 3 92 3 1 8 60 83 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 91 89 3 92 3 0 3 59 81 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 62 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - U - - - ML 93 92 3 95 3 1 8 59 82 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 94 92 3 95 3 0 2 58 80 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 61 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - A - - - ML 96 95 3 98 3 1 7 58 81 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 97 95 3 98 3 0 2 57 79 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 6 60 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - A - - - ML 99 98 3 101 3 1 7 57 80 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 100 98 3 101 3 0 1 56 78 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 59 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - U - - - ML 102 101 3 104 3 1 6 56 79 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 103 101 3 104 3 0 1 55 77 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 58 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - U - - - ML 105 104 3 107 3 1 6 55 78 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 106 104 3 107 3 0 0 53 76 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 4 57 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - C - - - ML 108 107 3 110 3 1 5 54 77 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 109 107 3 110 3 0 0 52 75 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 56 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - G - - - ML 111 110 3 113 3 1 5 53 76 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 112 110 3 113 3 0 0 51 74 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 55 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - A - - - ML 114 113 3 116 3 1 4 52 75 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 115 113 3 116 3 0 0 50 73 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 54 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - A - - - ML 117 116 3 119 3 1 4 51 74 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 118 116 3 119 3 0 0 49 72 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 2 53 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - - - ML 120 119 3 122 3 1 3 50 72 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 121 119 3 122 3 0 0 48 71 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 52 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - U - - - ML 123 122 3 125 3 1 3 49 71 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 124 122 3 125 3 0 0 47 70 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 51 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - G - - - ML 126 125 3 128 3 1 2 48 70 -7.981 -0.020 -6.635 0.090 -1.654 1.096 -1.061 D 127 125 3 128 3 0 0 46 69 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - c - - - ML 129 128 3 131 3 1 2 47 69 -7.981 -0.020 -6.635 0.009 0.864 -1.363 -0.349 D 130 128 3 131 3 0 0 45 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - U - - - ML 132 131 3 134 3 1 2 46 68 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 133 131 3 134 3 0 0 44 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 47 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - G - - - ML 135 134 3 137 3 1 2 45 67 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 136 134 3 137 3 0 0 43 66 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 46 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 138 137 3 140 3 1 1 44 66 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 139 137 3 140 3 0 0 42 65 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 45 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 141 140 3 143 3 1 1 43 65 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 142 140 3 143 3 0 0 41 64 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 44 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - A - - - ML 144 143 3 146 3 1 1 42 64 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 145 143 3 146 3 0 0 40 63 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 43 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - G - - - ML 147 146 3 149 3 1 1 41 63 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 148 146 3 149 3 0 0 39 62 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 42 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - A - - - ML 150 149 3 152 3 1 1 40 62 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 151 149 3 152 3 0 0 38 61 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 41 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - U - - - ML 153 152 3 155 3 1 1 39 61 -7.981 -0.219 -2.870 -1.516 -1.507 -2.251 1.627 D 154 152 3 155 3 0 0 37 60 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 40 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - a - - - ML 156 155 3 158 3 1 1 38 60 -2.701 -0.261 -6.439 0.372 -0.212 -0.063 -0.176 D 157 155 3 158 3 0 0 36 59 -7.302 -0.547 -1.694 IL 158 158 3 158 3 1 1 38 61 -1.827 -0.567 -4.527 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - A - - - ML 159 158 3 161 3 1 1 36 59 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 160 158 3 161 3 0 0 35 57 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 38 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - A - - - ML 162 161 3 164 3 1 1 35 58 -7.981 -0.020 -6.635 1.726 -2.405 -2.033 -1.950 D 163 161 3 164 3 0 0 34 56 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 37 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - U - - - ML 165 164 3 167 3 1 1 34 57 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 166 164 3 167 3 0 0 33 55 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 36 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - C - - - ML 168 167 3 170 3 1 1 33 56 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 169 167 3 170 3 0 0 32 54 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 35 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 59 - u - - - ML 171 170 3 173 3 1 1 32 55 -7.981 -0.020 -6.635 0.563 -0.855 -1.060 0.576 D 172 170 3 173 3 0 0 31 53 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 34 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - u - - - ML 174 173 3 176 3 1 1 31 54 -7.981 -0.020 -6.635 -0.325 -0.185 -0.401 0.646 D 175 173 3 176 3 0 0 30 52 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 33 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - A - - - ML 177 176 3 179 3 1 1 30 53 -7.981 -0.020 -6.635 1.067 -1.078 -1.145 -0.031 D 178 176 3 179 3 0 0 29 51 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 32 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - U - - - ML 180 179 3 182 3 1 1 29 52 -7.981 -0.020 -6.635 -0.501 -0.898 -0.414 1.005 D 181 179 3 182 3 0 0 28 50 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 31 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - A - - - ML 183 182 3 185 3 1 1 28 51 -7.981 -0.222 -2.850 1.170 -1.471 -0.214 -0.923 D 184 182 3 185 3 0 0 27 49 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 30 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - c - - - ML 186 185 3 188 3 1 1 27 50 -7.782 -0.023 -6.436 -0.612 0.704 -1.388 0.417 D 187 185 3 188 3 0 0 26 48 -7.314 -0.542 -1.705 IL 188 188 3 188 3 1 1 29 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - A - - - ML 189 188 3 191 3 1 1 26 49 -7.981 -0.020 -6.635 1.157 -1.465 -0.189 -0.915 D 190 188 3 191 3 0 0 24 47 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 28 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - - - ML 192 191 3 194 3 1 1 25 48 -1.947 -0.453 -6.635 1.086 -0.410 -1.160 -0.563 D 193 191 3 194 3 0 0 21 43 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 26 48 -1.188 -1.330 -2.613 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - a - - - ML 195 194 3 197 3 1 1 19 37 -7.782 -0.023 -6.436 0.833 -0.866 -0.970 0.213 D 196 194 3 197 3 0 0 17 36 -7.314 -2.827 -0.230 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 71 - a - - - ML 198 197 3 200 3 1 1 18 36 -7.782 -0.023 -6.436 0.833 -0.866 -0.970 0.213 D 199 197 3 200 3 0 0 17 35 -7.314 -0.542 -1.705 IL 200 200 3 200 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 72 - C - - - ML 201 200 3 203 3 1 1 16 35 -7.981 -0.020 -6.635 -1.781 1.635 -2.606 -1.187 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 73 - U - - - ML 204 203 3 206 3 1 1 15 33 -7.981 -0.020 -6.635 -1.516 -1.507 -2.251 1.627 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 74 - G - - - ML 207 206 3 209 3 1 1 13 31 -7.981 -0.020 -6.635 -1.616 -2.841 1.732 -2.228 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 75 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.726 -2.405 -2.033 -1.950 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sn2317 ACC RF01165 DESC Small nucleolar RNA sn2317 LENG 70 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 17:44:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01165/CM NSEQ 4 EFFN 2.074219 CKSUM 1491642965 STATS LOCAL MSV -8.6430 0.71883 STATS LOCAL VITERBI -9.0343 0.71883 STATS LOCAL FORWARD -3.4331 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13505 1.68918 1.60587 1.22687 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 0.00000 * 1 1.61893 1.51952 1.64917 0.93940 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 2 2.50097 3.10333 0.19175 3.04537 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 3 2.82690 1.79695 2.55917 0.36007 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 4 3.06430 0.27521 2.82077 2.00739 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 5 0.17917 3.10610 2.84336 2.79642 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 6 0.17917 3.10610 2.84336 2.79642 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 7 2.48599 2.47126 2.99796 0.24540 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 8 2.56192 3.41995 0.17423 2.99526 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 9 0.17917 3.10610 2.84336 2.79642 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 10 2.48599 2.47126 2.99796 0.24540 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 11 2.56192 3.41995 0.17423 2.99526 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 12 2.48599 2.47126 2.99796 0.24540 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 13 2.68489 0.23704 3.25842 2.25986 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 14 2.02379 0.67591 2.58933 1.25849 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 15 1.40878 2.01370 2.27287 0.65576 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 16 0.17917 3.10610 2.84336 2.79642 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 17 0.17917 3.10610 2.84336 2.79642 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19804 1.83528 3.90748 1.59877 0.22583 1.09861 0.40547 18 0.99208 1.99140 2.13465 0.98242 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 19 2.68489 0.23704 3.25842 2.25986 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 20 2.48599 2.47126 2.99796 0.24540 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 21 0.17917 3.10610 2.84336 2.79642 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 22 2.68489 0.23704 3.25842 2.25986 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 23 2.56192 3.41995 0.17423 2.99526 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 24 0.17917 3.10610 2.84336 2.79642 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 25 2.48599 2.47126 2.99796 0.24540 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 26 2.48599 2.47126 2.99796 0.24540 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 27 2.48599 2.47126 2.99796 0.24540 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 28 0.17917 3.10610 2.84336 2.79642 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 29 0.17917 3.10610 2.84336 2.79642 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 30 2.48599 2.47126 2.99796 0.24540 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 31 2.48599 2.47126 2.99796 0.24540 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 32 2.68489 0.23704 3.25842 2.25986 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 33 2.56192 3.41995 0.17423 2.99526 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 34 0.17917 3.10610 2.84336 2.79642 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 35 0.17917 3.10610 2.84336 2.79642 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 36 2.48599 2.47126 2.99796 0.24540 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 37 2.48599 2.47126 2.99796 0.24540 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 38 1.32906 2.56085 0.61298 2.15157 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 39 1.38622 0.77174 2.35592 1.64523 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 40 2.48599 2.47126 2.99796 0.24540 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 41 2.56192 3.41995 0.17423 2.99526 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 42 2.48599 2.47126 2.99796 0.24540 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 43 2.56192 3.41995 0.17423 2.99526 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 44 0.17917 3.10610 2.84336 2.79642 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 45 2.56192 3.41995 0.17423 2.99526 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 46 0.17917 3.10610 2.84336 2.79642 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 47 2.48599 2.47126 2.99796 0.24540 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19564 3.90748 1.84767 1.46634 0.26236 1.09861 0.40547 48 1.12799 1.53058 1.42491 1.51696 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.23646 1.67511 3.75955 0.23252 1.57278 0.22710 1.59376 49 0.17917 3.10610 2.84336 2.79642 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 50 0.17917 3.10610 2.84336 2.79642 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 51 2.48599 2.47126 2.99796 0.24540 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 52 2.68489 0.23704 3.25842 2.25986 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 53 0.99185 1.99143 2.13462 0.98264 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 54 1.62159 1.51300 1.66310 0.93492 60 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 55 0.63740 2.14904 2.19723 1.41210 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 56 1.75105 2.02578 1.67591 0.67849 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 57 0.56586 2.43085 1.53344 2.05279 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19814 3.90748 1.83473 1.46634 0.26236 1.09861 0.40547 58 1.82992 0.88538 2.37040 1.09789 64 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04783 3.75716 3.75716 1.46634 0.26236 0.22449 1.60409 59 0.57471 2.42623 1.51583 2.04686 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 60 0.62301 1.67064 2.21052 1.79635 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19564 1.84767 3.90748 1.13381 0.38832 1.09861 0.40547 61 0.80202 1.99719 2.07082 1.23864 70 a - - _ 1.38629 1.38629 1.38629 1.38629 0.19814 3.90748 1.83473 1.46634 0.26236 1.09861 0.40547 62 0.80202 1.99719 2.07082 1.23864 71 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04783 3.75716 3.75716 1.46634 0.26236 0.22449 1.60409 63 2.68489 0.23704 3.25842 2.25986 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 64 2.48599 2.47126 2.99796 0.24540 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 65 2.56192 3.41995 0.17423 2.99526 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 66 0.17917 3.10610 2.84336 2.79642 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 67 2.28518 2.98966 0.23761 2.82297 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 68 0.40854 2.74278 1.63393 2.57930 77 A - - > 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 69 3.26921 0.22451 2.94188 2.20463 78 C - - > 1.38629 1.38629 1.38629 1.38629 0.04101 3.90748 3.90748 1.46634 0.26236 1.09861 0.40547 70 0.63178 2.15364 2.20014 1.42086 79 A - - : 1.38629 1.38629 1.38629 1.38629 0.02072 3.88719 * 1.46634 0.26236 0.00000 * //