INFERNAL1/a [1.1.5 | Sep 2023] NAME sn668 ACC RF01162 DESC Small nucleolar RNA sn668 STATES 199 NODES 63 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 06:31:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01162/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.760742 CKSUM 363515914 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.60 NC 38.60 EFP7GF -8.7764 0.71890 ECMLC 0.66337 -5.11926 3.46477 1600000 356639 0.003365 ECMGC 0.41503 -17.25221 -3.30907 1600000 130385 0.003068 ECMLI 0.65733 -3.16694 5.13204 1600000 280760 0.004274 ECMGI 0.44757 -11.91049 0.34880 1600000 96597 0.004141 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 82 102 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 IL 1 1 2 1 6 1 21 84 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 21 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 65 A U - - MP 3 2 3 7 6 2 24 82 102 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 4 2 3 7 6 1 18 80 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 18 80 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 13 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 20 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 20 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 64 G C - - MP 9 8 6 13 6 2 22 80 100 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 10 8 6 13 6 1 18 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 16 78 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 13 76 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 19 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 19 79 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 63 U A - - MP 15 14 6 19 6 2 20 78 98 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 16 14 6 19 6 1 17 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 12 75 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 18 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 18 77 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 62 C G - - MP 21 20 6 25 4 2 18 76 96 -6.877 -7.084 -0.056 -5.498 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 22 20 6 25 4 1 16 76 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 13 75 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 12 74 95 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 17 77 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 27 26 6 29 3 1 17 74 94 -7.899 -0.022 -6.553 0.553 -0.817 -1.018 0.557 D 28 26 6 29 3 0 11 72 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 30 29 3 32 3 1 16 73 93 -7.899 -0.022 -6.553 0.982 -1.342 0.062 -0.771 D 31 29 3 32 3 0 11 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 15 72 92 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 34 32 3 35 3 0 10 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 15 70 91 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 37 35 3 38 3 0 9 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 14 69 90 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 40 38 3 41 3 0 8 68 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 13 68 89 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 43 41 3 44 3 0 8 67 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 13 67 87 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 46 44 3 47 3 0 7 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 48 47 3 50 3 1 12 66 86 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 49 47 3 50 3 0 6 65 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 51 50 3 53 3 1 11 65 85 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 52 50 3 53 3 0 5 64 84 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 54 53 3 56 3 1 10 64 84 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 55 53 3 56 3 0 5 63 83 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 57 56 3 59 3 1 10 63 83 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 58 56 3 59 3 0 4 62 82 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 60 59 3 62 3 1 9 62 82 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 61 59 3 62 3 0 3 61 81 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 63 62 3 65 3 1 8 61 81 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 64 62 3 65 3 0 2 60 80 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 66 65 3 68 3 1 8 60 80 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 67 65 3 68 3 0 2 59 79 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 69 68 3 71 3 1 7 59 79 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 70 68 3 71 3 0 1 58 78 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 72 71 3 74 3 1 6 58 78 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 73 71 3 74 3 0 0 56 77 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 75 74 3 77 3 1 6 57 77 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 76 74 3 77 3 0 0 55 75 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 78 77 3 80 3 1 5 56 76 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 79 77 3 80 3 0 0 54 74 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 81 80 3 83 3 1 5 55 75 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 82 80 3 83 3 0 0 53 73 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 84 83 3 86 3 1 4 54 74 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 85 83 3 86 3 0 0 52 72 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 87 86 3 89 3 1 4 53 72 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 88 86 3 89 3 0 0 51 71 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 90 89 3 92 3 1 3 52 71 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 91 89 3 92 3 0 0 50 70 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 93 92 3 95 3 1 3 51 70 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 94 92 3 95 3 0 0 49 69 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 96 95 3 98 3 1 2 50 69 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 97 95 3 98 3 0 0 48 68 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 99 98 3 101 3 1 2 48 68 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 100 98 3 101 3 0 0 47 67 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 102 101 3 104 3 1 2 47 67 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 103 101 3 104 3 0 0 46 66 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 105 104 3 107 3 1 1 46 66 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 106 104 3 107 3 0 0 45 65 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 108 107 3 110 3 1 1 45 65 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 109 107 3 110 3 0 0 44 64 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 111 110 3 113 3 1 1 44 64 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 112 110 3 113 3 0 0 43 63 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - u - - - ML 114 113 3 116 3 1 1 43 63 -7.899 -0.022 -6.553 -0.382 -0.844 -0.147 0.826 D 115 113 3 116 3 0 0 42 61 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 117 116 3 119 3 1 1 42 62 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 118 116 3 119 3 0 0 41 60 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 120 119 3 122 3 1 1 41 60 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 121 119 3 122 3 0 0 40 59 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 123 122 3 125 3 1 1 40 59 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 124 122 3 125 3 0 0 39 58 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 126 125 3 128 3 1 1 39 58 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 127 125 3 128 3 0 0 38 57 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 129 128 3 131 3 1 1 38 57 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 130 128 3 131 3 0 0 36 56 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 132 131 3 134 3 1 1 37 56 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 133 131 3 134 3 0 0 35 55 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 135 134 3 137 3 1 1 36 55 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 136 134 3 137 3 0 0 34 54 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 138 137 3 140 3 1 1 35 54 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 139 137 3 140 3 0 0 33 53 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 141 140 3 143 3 1 1 34 53 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 142 140 3 143 3 0 0 32 52 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 144 143 3 146 3 1 1 32 52 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 145 143 3 146 3 0 0 31 50 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 147 146 3 149 3 1 1 31 50 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 148 146 3 149 3 0 0 30 49 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 150 149 3 152 3 1 1 30 49 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 151 149 3 152 3 0 0 29 48 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 153 152 3 155 3 1 1 29 48 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 154 152 3 155 3 0 0 28 47 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - A - - - ML 156 155 3 158 3 1 1 28 47 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 157 155 3 158 3 0 0 27 46 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 159 158 3 161 3 1 1 27 46 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 160 158 3 161 3 0 0 26 45 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - c - - - ML 162 161 3 164 3 1 1 26 45 -7.899 -0.022 -6.553 0.257 0.277 -1.040 0.146 D 163 161 3 164 3 0 0 25 44 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - a - - - ML 165 164 3 167 3 1 1 25 44 -7.899 -0.022 -6.553 0.516 -0.350 -0.955 0.345 D 166 164 3 167 3 0 0 24 43 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 168 167 3 170 3 1 1 24 42 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 169 167 3 170 3 0 0 23 41 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 171 170 3 173 3 1 1 22 41 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 172 170 3 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 174 173 3 176 3 1 1 21 40 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - - - ML 177 176 3 179 3 1 1 20 39 -7.899 -0.022 -6.553 0.875 -0.926 -1.036 0.204 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 180 179 3 182 3 1 1 19 37 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - G - - - ML 183 182 3 185 3 1 1 18 36 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - C - - - ML 186 185 3 188 3 1 1 16 35 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 189 188 3 191 3 1 1 15 33 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 192 191 3 194 3 1 1 13 32 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.689 -2.240 -1.885 -1.769 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sn668 ACC RF01162 DESC Small nucleolar RNA sn668 LENG 65 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 06:31:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01162/CM NSEQ 6 EFFN 1.889648 CKSUM 363515914 STATS LOCAL MSV -7.9326 0.71890 STATS LOCAL VITERBI -8.8269 0.71890 STATS LOCAL FORWARD -3.6599 0.71890 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22969 1.72967 1.35287 1.30277 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 0.00000 * 1 0.44669 2.51244 1.64147 2.45931 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 2 2.44941 3.01148 0.20748 2.96018 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 3 2.73519 1.72600 2.45014 0.39922 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 4 2.97448 0.30292 2.71458 1.93768 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 5 0.99750 1.96885 2.10971 0.99342 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 6 0.69365 2.34649 1.33729 1.95200 6 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 7 2.39672 2.39762 2.90425 0.27016 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 8 2.45945 3.30169 0.19679 2.87651 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 9 0.19942 3.00893 2.75594 2.68970 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 10 2.39672 2.39762 2.90425 0.27016 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 11 2.45945 3.30169 0.19679 2.87651 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 12 2.39672 2.39762 2.90425 0.27016 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 13 2.39672 2.39762 2.90425 0.27016 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 14 2.39672 2.39762 2.90425 0.27016 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 15 2.39672 2.39762 2.90425 0.27016 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 16 2.39672 2.39762 2.90425 0.27016 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 17 2.39672 2.39762 2.90425 0.27016 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 18 2.56772 0.26743 3.13794 2.16652 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 19 0.19942 3.00893 2.75594 2.68970 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 20 0.19942 3.00893 2.75594 2.68970 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 21 2.45945 3.30169 0.19679 2.87651 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 22 0.19942 3.00893 2.75594 2.68970 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 23 2.56772 0.26743 3.13794 2.16652 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 24 2.45945 3.30169 0.19679 2.87651 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 25 2.45945 3.30169 0.19679 2.87651 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 26 2.45945 3.30169 0.19679 2.87651 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 27 0.19942 3.00893 2.75594 2.68970 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 28 2.56772 0.26743 3.13794 2.16652 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 29 2.56772 0.26743 3.13794 2.16652 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 30 2.45945 3.30169 0.19679 2.87651 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 31 0.19942 3.00893 2.75594 2.68970 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 32 2.56772 0.26743 3.13794 2.16652 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 33 2.39672 2.39762 2.90425 0.27016 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 34 1.67051 1.99059 1.48586 0.80090 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 35 2.45945 3.30169 0.19679 2.87651 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 36 2.39672 2.39762 2.90425 0.27016 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 37 2.45945 3.30169 0.19679 2.87651 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 38 0.19942 3.00893 2.75594 2.68970 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 39 0.19942 3.00893 2.75594 2.68970 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 40 2.39672 2.39762 2.90425 0.27016 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 41 2.45945 3.30169 0.19679 2.87651 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 42 0.19942 3.00893 2.75594 2.68970 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 43 2.39672 2.39762 2.90425 0.27016 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 44 2.45945 3.30169 0.19679 2.87651 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 45 2.56772 0.26743 3.13794 2.16652 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 46 0.19942 3.00893 2.75594 2.68970 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 47 2.39672 2.39762 2.90425 0.27016 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 48 0.19942 3.00893 2.75594 2.68970 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 49 0.19942 3.00893 2.75594 2.68970 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 50 1.20769 1.18233 2.12508 1.29053 50 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 51 1.02277 1.63036 2.06291 1.14741 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 52 2.45945 3.30169 0.19679 2.87651 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 53 0.19942 3.00893 2.75594 2.68970 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 54 0.19942 3.00893 2.75594 2.68970 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 55 0.76966 2.04534 2.12387 1.24506 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 56 2.39672 2.39762 2.90425 0.27016 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 57 2.45945 3.30169 0.19679 2.87651 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 58 2.56772 0.26743 3.13794 2.16652 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 59 2.39672 2.39762 2.90425 0.27016 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 60 2.45945 3.30169 0.19679 2.87651 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 61 0.19942 3.00893 2.75594 2.68970 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 62 2.21521 2.88263 0.26185 2.72945 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 63 0.45412 2.63086 1.56274 2.48394 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 64 3.18701 0.24366 2.84387 2.14773 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.04338 3.85243 3.85243 1.46634 0.26236 1.09861 0.40547 65 2.70159 1.91068 2.32662 0.37499 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.02193 3.83097 * 1.46634 0.26236 0.00000 * //