INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD5 ACC RF01161 DESC Small nucleolar RNA SNORD5 STATES 220 NODES 74 CLEN 72 W 151 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 15:17:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01161/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 4.291992 CKSUM 616141027 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.40 NC 54.90 EFP7GF -9.1002 0.71869 ECMLC 0.58087 -9.89366 0.52352 1600000 509472 0.002355 ECMGC 0.37270 -15.06710 -0.96041 1600000 76803 0.005208 ECMLI 0.46443 -9.42346 2.49120 1600000 303644 0.003952 ECMGI 0.42588 -7.47050 4.21242 1600000 57928 0.006905 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 233 -7.689 -7.896 -0.032 -6.310 IL 1 1 2 1 4 2 30 153 235 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 152 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 30 151 234 -6.021 -0.045 -6.021 -0.129 -2.214 1.376 -1.865 D 4 2 3 5 3 0 25 148 230 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 31 158 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 29 150 232 -6.021 -0.045 -6.021 -0.744 -0.926 -1.524 1.339 D 7 5 3 8 3 0 24 147 229 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 31 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 2 28 148 231 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 10 8 3 11 3 0 23 145 227 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 30 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 28 147 229 -6.021 -0.045 -6.021 -1.406 1.225 -0.871 -0.436 D 13 11 3 14 3 0 23 144 226 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 29 154 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 27 146 228 -6.021 -0.045 -6.021 1.022 -1.118 -0.708 -0.157 D 16 14 3 17 3 0 22 143 225 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 28 153 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 26 145 227 -6.021 -0.045 -6.021 -0.084 -0.222 0.323 -0.076 D 19 17 3 20 3 0 21 142 223 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 28 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 25 143 225 -6.021 -0.045 -6.021 1.185 -1.805 0.105 -1.456 D 22 20 3 23 3 0 21 140 222 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 27 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 25 142 224 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 25 23 3 26 3 0 20 139 221 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 26 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 24 141 222 -6.021 -0.045 -6.021 -1.578 -2.245 1.588 -1.162 D 28 26 3 29 3 0 19 138 219 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 25 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 23 140 221 -6.021 -0.045 -6.021 1.572 -1.156 -1.998 -1.610 D 31 29 3 32 3 0 18 136 218 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 22 138 220 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 34 32 3 35 3 0 18 135 216 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 21 137 218 -6.021 -0.045 -6.021 -1.578 -2.245 1.588 -1.162 D 37 35 3 38 3 0 17 134 215 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 23 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 21 136 217 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 40 38 3 41 3 0 16 133 213 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 22 143 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 20 134 215 -6.021 -0.045 -6.021 1.071 -0.444 -0.745 -0.816 D 43 41 3 44 3 0 16 131 212 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 21 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 19 133 214 -6.021 -0.045 -6.021 -0.504 -1.428 -1.664 1.383 D 46 44 3 47 3 0 15 130 211 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 21 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 18 132 213 -6.021 -0.045 -6.021 -0.772 -1.227 -0.890 1.291 D 49 47 3 50 3 0 14 129 209 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 20 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 17 131 211 -6.021 -0.045 -6.021 -1.058 -0.364 -1.555 1.264 D 52 50 3 53 3 0 14 128 208 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 19 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - a - - - ML 54 53 3 56 3 1 16 129 210 -6.021 -0.082 -4.647 0.823 -0.333 -1.080 -0.053 D 55 53 3 56 3 0 13 126 207 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 18 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - a - - - ML 57 56 3 59 3 1 16 128 208 -5.985 -0.155 -3.537 0.940 -0.667 -1.105 -0.019 D 58 56 3 59 3 0 13 125 205 -12.165 -2.199 -0.355 IL 59 59 3 59 3 1 18 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - c - - - ML 60 59 3 62 3 1 15 127 207 -5.880 -0.050 -5.880 -0.654 0.823 -0.549 -0.133 D 61 59 3 62 3 0 12 125 205 -13.143 -0.361 -2.177 IL 62 62 3 62 3 1 17 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 15 125 205 -6.021 -0.045 -6.021 -1.056 -1.603 -1.980 1.554 D 64 62 3 65 3 0 10 122 202 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 16 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 14 124 204 -6.021 -0.045 -6.021 -0.977 -2.679 1.651 -2.354 D 67 65 3 68 3 0 9 121 201 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 15 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 13 123 203 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 70 68 3 71 3 0 9 120 199 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 130 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 12 122 201 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 73 71 3 74 3 0 8 118 198 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 14 129 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 12 120 200 -6.021 -0.045 -6.021 -2.293 1.595 -2.541 -0.730 D 76 74 3 77 3 0 7 117 196 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 13 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 11 119 198 -6.021 -0.135 -3.758 1.874 -3.351 -3.032 -3.145 D 79 77 3 80 3 0 7 115 194 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 11 118 197 -5.934 -0.048 -5.934 1.852 -3.123 -2.824 -2.908 D 82 80 3 83 3 0 6 113 192 -12.732 -2.766 -0.230 IL 83 83 3 83 3 1 13 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 11 116 195 -5.934 -0.048 -5.934 -2.664 1.785 -2.901 -1.933 D 85 83 3 86 3 0 6 113 191 -12.732 -2.766 -0.230 IL 86 86 3 86 3 1 12 124 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 10 115 194 -5.934 -0.048 -5.934 -2.402 -1.947 -2.589 1.759 D 88 86 3 89 3 0 6 112 190 -12.732 -2.766 -0.230 IL 89 89 3 89 3 1 11 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 9 114 192 -5.934 -0.048 -5.934 -2.287 -3.260 1.834 -2.985 D 91 89 3 92 3 0 5 112 190 -12.732 -0.503 -1.766 IL 92 92 3 92 3 1 11 121 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 9 112 191 -6.021 -0.045 -6.021 -2.837 1.810 -3.081 -2.084 D 94 92 3 95 3 0 4 109 187 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 10 120 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 8 111 189 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 97 95 3 98 3 0 3 108 186 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 9 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 7 110 188 -6.021 -0.045 -6.021 -0.746 -2.557 1.595 -2.224 D 100 98 3 101 3 0 3 106 184 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 9 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 7 108 186 -6.021 -0.045 -6.021 1.100 -0.878 -1.232 -0.175 D 103 101 3 104 3 0 2 105 183 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 8 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - g - - - ML 105 104 3 107 3 1 6 107 185 -6.021 -0.045 -6.021 0.536 -0.972 0.587 -0.892 D 106 104 3 107 3 0 1 104 181 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 5 106 183 -6.021 -0.045 -6.021 -2.030 -0.949 -2.246 1.598 D 109 107 3 110 3 0 1 102 180 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 7 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 5 104 182 -6.021 -0.045 -6.021 -1.651 -1.637 1.644 -2.094 D 112 110 3 113 3 0 0 101 178 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 6 112 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 4 103 180 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 115 113 3 116 3 0 0 100 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 3 101 179 -2.071 -0.539 -3.758 -1.269 -0.474 -1.021 1.246 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 4 102 179 -1.946 -0.433 -14.259 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - a - - - ML 120 119 3 122 3 1 3 100 177 -5.934 -0.048 -5.934 0.660 -0.243 -0.376 -0.314 D 121 119 3 122 3 0 0 97 174 -12.732 -2.766 -0.230 IL 122 122 3 122 3 1 4 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - C - - - ML 123 122 3 125 3 1 2 99 176 -5.934 -0.048 -5.934 -0.773 1.095 -0.870 -0.450 D 124 122 3 125 3 0 0 97 173 -12.732 -0.503 -1.766 IL 125 125 3 125 3 1 3 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - A - - - ML 126 125 3 128 3 1 1 97 174 -6.021 -0.098 -4.321 1.571 -2.229 -0.860 -1.914 D 127 125 3 128 3 0 0 94 170 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 4 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - G - - - ML 129 128 3 131 3 1 2 96 173 -5.970 -0.047 -5.970 -0.553 -2.379 1.527 -2.040 D 130 128 3 131 3 0 0 92 168 -12.358 -2.392 -0.305 IL 131 131 3 131 3 1 3 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - - - ML 132 131 3 134 3 1 2 95 171 -5.970 -0.047 -5.970 1.703 -2.506 -1.502 -2.224 D 133 131 3 134 3 0 0 91 167 -12.358 -2.392 -0.305 IL 134 134 3 134 3 1 3 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - C - - - ML 135 134 3 137 3 1 1 93 169 -5.970 -0.047 -5.970 -0.429 1.070 -1.402 -0.359 D 136 134 3 137 3 0 0 91 167 -12.358 -0.692 -1.392 IL 137 137 3 137 3 1 2 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - A - - - ML 138 137 3 140 3 1 1 92 168 -6.021 -0.045 -6.021 1.663 -2.441 -1.240 -2.145 D 139 137 3 140 3 0 0 88 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 100 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - U - - - ML 141 140 3 143 3 1 1 90 166 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 142 140 3 143 3 0 0 87 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - G - - - ML 144 143 3 146 3 1 1 89 164 -6.021 -0.045 -6.021 -0.977 -2.679 1.651 -2.354 D 145 143 3 146 3 0 0 85 161 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 97 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - A - - - ML 147 146 3 149 3 1 1 87 163 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 148 146 3 149 3 0 0 84 159 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 86 161 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 151 149 3 152 3 0 0 82 157 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - C - - - ML 153 152 3 155 3 1 1 84 159 -6.021 -0.045 -6.021 -2.837 1.810 -3.081 -2.084 D 154 152 3 155 3 0 0 81 156 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 93 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - U - - - ML 156 155 3 158 3 1 1 83 158 -6.021 -0.045 -6.021 -0.667 -1.134 -0.571 1.164 D 157 155 3 158 3 0 0 79 154 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 159 158 3 161 3 1 1 81 156 -6.021 -0.045 -6.021 1.685 -2.503 -1.351 -2.212 D 160 158 3 161 3 0 0 78 152 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 90 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - A - - - ML 162 161 3 164 3 1 1 80 154 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 163 161 3 164 3 0 0 77 151 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 88 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - A - - - ML 165 164 3 167 3 1 1 78 152 -6.021 -0.045 -6.021 1.581 -1.189 -2.015 -1.630 D 166 164 3 167 3 0 0 75 149 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - A - - - ML 168 167 3 170 3 1 1 77 150 -4.607 -0.277 -2.902 1.101 -1.201 -0.446 -0.544 D 169 167 3 170 3 0 0 75 148 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 77 151 -3.267 -0.159 -10.911 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - C - - - ML 171 170 3 173 3 1 1 76 150 -5.839 -0.051 -5.839 -1.851 1.438 -2.071 -0.368 D 172 170 3 173 3 0 0 74 147 -13.383 -0.299 -2.417 IL 173 173 3 173 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - U - - - ML 174 173 3 176 3 1 1 74 148 -6.021 -0.045 -6.021 -0.859 -0.850 -0.804 1.215 D 175 173 3 176 3 0 0 71 144 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 83 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 63 - u - - - ML 177 176 3 179 3 1 1 73 146 -6.021 -0.045 -6.021 -0.545 -0.681 -0.447 0.969 D 178 176 3 179 3 0 0 69 142 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 64 - a - - - ML 180 179 3 182 3 1 1 71 144 -6.021 -0.045 -6.021 0.942 -0.830 -0.371 -0.428 D 181 179 3 182 3 0 0 67 140 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 65 - A - - - ML 183 182 3 185 3 1 1 69 142 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 184 182 3 185 3 0 0 65 138 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 66 - U - - - ML 186 185 3 188 3 1 1 68 140 -6.021 -0.045 -6.021 -2.040 -0.972 -2.256 1.603 D 187 185 3 188 3 0 0 64 136 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 67 - U - - - ML 189 188 3 191 3 1 1 66 138 -4.001 -0.117 -6.021 -1.056 -1.603 -1.980 1.554 D 190 188 3 191 3 0 0 62 134 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 67 139 -0.969 -1.032 -12.637 0.000 0.000 0.000 0.000 [ MATL 64 ] 70 - C - - - ML 192 191 3 194 3 1 1 65 137 -6.021 -0.045 -6.021 -2.837 1.810 -3.081 -2.084 D 193 191 3 194 3 0 0 60 132 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 71 - U - - - ML 195 194 3 197 3 1 1 63 134 -6.021 -0.045 -6.021 -2.587 -2.100 -2.777 1.788 D 196 194 3 197 3 0 0 58 130 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 72 - G - - - ML 198 197 3 200 3 1 1 61 132 -6.021 -0.045 -6.021 -2.417 -3.438 1.852 -3.165 D 199 197 3 200 3 0 0 56 127 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 73 - A - - - ML 201 200 3 203 3 1 1 59 130 -6.021 -0.045 -6.021 1.874 -3.351 -3.032 -3.145 D 202 200 3 203 3 0 0 54 124 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - c - - - ML 204 203 3 206 3 1 1 57 127 -6.021 -0.045 -6.021 -0.779 0.767 -0.751 0.165 D 205 203 3 206 3 0 0 51 121 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - a - - - ML 207 206 3 209 3 1 1 54 124 -6.021 -0.045 -6.021 0.789 -0.776 -0.454 -0.062 D 208 206 3 209 3 0 0 48 118 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 66 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - G - - - ML 210 209 3 212 3 1 1 51 121 -6.021 -0.117 -4.001 -1.160 -2.774 1.689 -2.457 D 211 209 3 212 3 0 0 44 113 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - a - - - ML 213 212 3 215 3 1 1 48 117 -5.951 -0.047 -5.951 0.652 -0.213 -0.298 -0.410 D 214 212 3 215 3 0 0 29 99 -12.564 -2.598 -0.261 IL 215 215 3 215 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 78 - g - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 0.156 -1.003 0.373 0.127 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD5 ACC RF01161 DESC Small nucleolar RNA SNORD5 LENG 72 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 15:17:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01161/CM NSEQ 20 EFFN 4.291992 CKSUM 616141027 STATS LOCAL MSV -8.2742 0.71869 STATS LOCAL VITERBI -9.0602 0.71869 STATS LOCAL FORWARD -3.5642 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14940 1.70391 1.56496 1.23064 1.38629 1.38629 1.38629 1.38629 0.01799 5.32936 4.34418 0.39730 1.11515 0.00000 * 1 1.47578 2.92106 0.43247 2.67917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 2 1.90208 2.02843 2.44266 0.45844 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 3 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 4 2.36094 0.53753 1.99020 1.68841 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 5 0.67785 2.16157 1.87732 1.49545 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 6 1.44464 1.54041 1.16248 1.43899 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 7 0.56466 2.63729 1.31382 2.39581 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 8 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 9 2.48012 2.94232 0.28531 2.19154 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 10 0.29656 2.18785 2.77106 2.50251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 11 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 12 2.48012 2.94232 0.28531 2.19154 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 13 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 14 0.64420 1.69407 1.90278 1.95198 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 15 1.73559 2.37588 2.53964 0.42790 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 16 1.92133 2.23705 2.00345 0.49111 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 17 2.11938 1.63828 2.46445 0.50995 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 18 0.81598 1.61682 2.13489 1.42293 - a - - : 1.38629 1.38629 1.38629 1.38629 0.05690 4.17315 3.22109 1.46634 0.26236 1.09861 0.40547 19 0.73492 1.84830 2.15199 1.39958 - a - - : 1.38629 1.38629 1.38629 1.38629 0.10750 4.14834 2.45189 1.46634 0.26236 1.52411 0.24566 20 1.83975 0.81567 1.76704 1.47857 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03456 4.07540 4.07540 1.46634 0.26236 0.24987 1.50913 21 2.11801 2.49718 2.75902 0.30917 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 22 2.06330 3.24301 0.24205 3.01785 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 23 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 24 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 25 2.97573 0.28068 3.14778 1.89200 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 26 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09359 4.17315 2.60454 1.46634 0.26236 1.09861 0.40547 27 0.10237 3.55065 3.34405 3.40214 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 1.91692 0.15906 28 3.23281 0.14894 3.39679 2.72649 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 1.91692 0.15906 29 3.05152 2.73614 3.18065 0.16684 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 1.91692 0.15906 30 2.97145 3.64571 0.11530 3.45545 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 0.34831 1.22377 31 3.35278 0.13183 3.52164 2.83068 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 32 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 33 1.90368 3.15888 0.28103 2.92803 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 34 0.62353 1.99477 2.24050 1.50733 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 35 1.01506 2.05985 0.97969 2.00456 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 36 2.79361 2.04420 2.94282 0.27892 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 37 2.53057 2.52123 0.24657 2.83796 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 38 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 39 2.26579 1.71485 2.09378 0.52249 - U - - : 1.38629 1.38629 1.38629 1.38629 0.37394 1.43531 2.60454 0.30038 1.34913 1.09861 0.40547 40 0.92871 1.55479 1.64696 1.60411 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 1.91692 0.15906 41 1.92243 0.62748 1.98914 1.69829 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03327 4.11284 4.11284 1.46634 0.26236 0.34831 1.22377 42 0.29766 2.93122 1.98210 2.71302 - A - - : 1.38629 1.38629 1.38629 1.38629 0.06769 4.17315 2.99488 1.46634 0.26236 1.09861 0.40547 43 1.76951 3.03515 0.32751 2.80014 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03243 4.13790 4.13790 1.46634 0.26236 1.65799 0.21137 44 0.20553 3.12330 2.42746 2.92786 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03243 4.13790 4.13790 1.46634 0.26236 1.65799 0.21137 45 1.68376 0.64472 2.35789 1.63529 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03243 4.13790 4.13790 1.46634 0.26236 0.47972 0.96484 46 0.23371 3.07808 2.24601 2.87275 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 47 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 48 2.06330 3.24301 0.24205 3.01785 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 49 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 50 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 51 3.35278 0.13183 3.52164 2.83068 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 52 1.84852 2.17211 1.78198 0.57930 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 53 0.21824 3.12105 2.32272 2.91971 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 54 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 55 0.29065 2.21075 2.78296 2.51644 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 56 0.62332 2.21844 1.69512 1.76326 - A - - : 1.38629 1.38629 1.38629 1.38629 0.19212 3.19325 2.01178 0.10975 2.26395 1.09861 0.40547 57 2.66922 0.38943 2.82152 1.64127 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04720 4.04720 1.46634 0.26236 0.20729 1.67551 58 1.98193 1.97514 1.94384 0.54421 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 59 1.76375 1.85812 1.69602 0.71494 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 60 0.73356 1.96137 1.64313 1.68328 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 61 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 62 2.80030 2.06010 2.94975 0.27521 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 63 2.11801 2.49718 2.75902 0.30917 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08104 2.77359 4.17315 0.71538 0.67140 1.09861 0.40547 64 3.35278 0.13183 3.52164 2.83068 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 65 3.17913 2.84199 3.31148 0.14664 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 66 3.06159 3.76904 0.10288 3.57982 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 67 0.08699 3.70930 3.48805 3.56632 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 68 1.92629 0.85475 1.90672 1.27169 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 69 0.83916 1.92396 1.70131 1.42939 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03129 4.17315 4.17315 1.46634 0.26236 1.09861 0.40547 70 2.19037 3.30928 0.21562 3.08916 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08104 4.17315 2.77359 1.46634 0.26236 1.09861 0.40547 71 0.93446 1.53374 1.59285 1.67062 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03286 4.12498 4.12498 1.46634 0.26236 1.80063 0.18056 72 1.27829 2.08125 1.12801 1.29816 - g - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //