INFERNAL1/a [1.1.4 | Dec 2020] NAME sn2841 ACC RF01160 DESC Small nucleolar RNA sn2841 STATES 220 NODES 70 CLEN 72 W 89 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:01:50 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.503906 CKSUM 2811479844 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 60.70 NC 38.60 EFP7GF -5.6976 0.72101 ECMLC 0.71192 -5.16913 2.92027 1600000 380431 0.003154 ECMGC 0.39291 -17.25926 -3.26235 1600000 97826 0.004089 ECMLI 0.65593 -3.53246 4.81349 1600000 286199 0.004193 ECMGI 0.43357 -10.96971 0.91931 1600000 69303 0.005772 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 89 110 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 IL 1 1 2 1 6 1 27 91 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 27 90 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 72 C G - - MP 3 2 3 7 6 2 29 89 110 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 4 2 3 7 6 1 24 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 24 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 19 85 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 26 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 26 88 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 71 U A - - MP 9 8 6 13 6 2 27 87 108 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.848 -3.659 -3.723 0.019 -2.742 -4.317 1.578 -3.412 -3.732 0.331 -4.121 -1.568 3.135 -4.011 -0.426 -2.587 ML 10 8 6 13 6 1 23 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 22 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 19 83 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 25 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 25 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 70 G C - - MP 15 14 6 19 6 2 25 85 106 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 16 14 6 19 6 1 22 84 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 21 84 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 18 82 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 24 85 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 23 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 69 C G - - MP 21 20 6 25 4 2 24 83 104 -6.762 -6.969 -0.061 -5.383 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 22 20 6 25 4 1 21 83 104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 19 83 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 18 82 103 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 23 84 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 22 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 27 26 6 29 3 1 22 81 101 -7.793 -0.023 -6.447 -0.283 -0.852 0.286 0.490 D 28 26 6 29 3 0 17 79 100 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 30 29 3 32 3 1 21 80 100 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 31 29 3 32 3 0 17 78 99 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 21 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 20 79 99 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 34 32 3 35 3 0 16 77 98 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 19 78 98 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 37 35 3 38 3 0 15 76 97 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 19 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 18 77 97 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 40 38 3 41 3 0 15 75 96 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 42 41 3 44 3 1 17 76 96 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 43 41 3 44 3 0 14 74 95 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 16 75 95 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 46 44 3 47 3 0 13 73 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 16 74 94 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 49 47 3 50 3 0 13 72 93 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 51 50 3 53 3 1 15 73 93 -7.793 -0.392 -2.100 -1.176 -1.228 -1.891 1.517 D 52 50 3 53 3 0 12 71 92 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 54 53 3 56 3 1 15 72 92 -7.431 -0.030 -6.085 -0.584 1.067 -1.336 -0.248 D 55 53 3 56 3 0 11 71 91 -7.670 -0.404 -2.062 IL 56 56 3 56 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 57 56 3 59 3 1 14 71 91 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 58 56 3 59 3 0 9 69 90 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 60 59 3 62 3 1 14 70 90 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 61 59 3 62 3 0 8 68 88 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 63 62 3 65 3 1 13 69 89 -7.793 -0.023 -6.447 -0.572 0.401 -1.333 0.687 D 64 62 3 65 3 0 7 67 87 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - u - - - ML 66 65 3 68 3 1 12 68 88 -7.793 -0.023 -6.447 -0.572 0.388 -1.332 0.697 D 67 65 3 68 3 0 7 66 86 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 11 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 69 68 3 71 3 1 12 66 87 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 70 68 3 71 3 0 6 65 85 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 72 71 3 74 3 1 11 65 86 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 73 71 3 74 3 0 5 64 84 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 10 64 85 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 76 74 3 77 3 0 4 63 83 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 78 77 3 80 3 1 10 63 83 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 79 77 3 80 3 0 4 62 82 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 8 65 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 81 80 3 83 3 1 9 62 82 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 82 80 3 83 3 0 3 61 81 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 84 83 3 86 3 1 8 61 81 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 85 83 3 86 3 0 2 60 80 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 87 86 3 89 3 1 8 60 80 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 88 86 3 89 3 0 2 59 79 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 90 89 3 92 3 1 7 59 79 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 91 89 3 92 3 0 1 58 78 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 93 92 3 95 3 1 6 58 78 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 94 92 3 95 3 0 0 57 77 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 96 95 3 98 3 1 6 57 77 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 97 95 3 98 3 0 0 56 76 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 99 98 3 101 3 1 5 56 76 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 100 98 3 101 3 0 0 55 75 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 102 101 3 104 3 1 5 55 75 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 103 101 3 104 3 0 0 53 73 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 105 104 3 107 3 1 4 54 74 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 106 104 3 107 3 0 0 52 72 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 108 107 3 110 3 1 4 53 73 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 109 107 3 110 3 0 0 51 71 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 111 110 3 113 3 1 3 52 72 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 112 110 3 113 3 0 0 50 70 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 114 113 3 116 3 1 3 51 71 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 115 113 3 116 3 0 0 49 69 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 117 116 3 119 3 1 2 50 69 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 118 116 3 119 3 0 0 48 68 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 120 119 3 122 3 1 2 49 68 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 121 119 3 122 3 0 0 47 67 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 123 122 3 125 3 1 2 48 67 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 124 122 3 125 3 0 0 46 66 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 126 125 3 128 3 1 1 46 66 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 127 125 3 128 3 0 0 45 65 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - - - ML 129 128 3 131 3 1 1 45 65 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 130 128 3 131 3 0 0 44 64 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 132 131 3 134 3 1 1 44 64 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 133 131 3 134 3 0 0 43 63 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 135 134 3 137 3 1 1 43 63 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 136 134 3 137 3 0 0 42 62 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 138 137 3 140 3 1 1 42 62 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 139 137 3 140 3 0 0 41 61 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 141 140 3 143 3 1 1 41 61 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 142 140 3 143 3 0 0 40 59 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 144 143 3 146 3 1 1 40 60 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 145 143 3 146 3 0 0 39 58 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - U - - - ML 147 146 3 149 3 1 1 39 58 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 148 146 3 149 3 0 0 38 57 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 150 149 3 152 3 1 1 38 57 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 151 149 3 152 3 0 0 37 56 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 153 152 3 155 3 1 1 37 56 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 154 152 3 155 3 0 0 36 55 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 156 155 3 158 3 1 1 36 55 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 157 155 3 158 3 0 0 34 54 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 159 158 3 161 3 1 1 35 54 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 160 158 3 161 3 0 0 33 53 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 162 161 3 164 3 1 1 34 53 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 163 161 3 164 3 0 0 32 52 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 165 164 3 167 3 1 1 33 52 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 166 164 3 167 3 0 0 31 51 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - U - - - ML 168 167 3 170 3 1 1 31 51 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 169 167 3 170 3 0 0 30 50 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - U - - - ML 171 170 3 173 3 1 1 30 49 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 172 170 3 173 3 0 0 29 48 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 174 173 3 176 3 1 1 29 48 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 175 173 3 176 3 0 0 28 47 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - C - - - ML 177 176 3 179 3 1 1 28 47 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 178 176 3 179 3 0 0 27 46 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 180 179 3 182 3 1 1 27 46 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 181 179 3 182 3 0 0 26 45 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - C - - - ML 183 182 3 185 3 1 1 26 45 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 184 182 3 185 3 0 0 25 44 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 186 185 3 188 3 1 1 25 44 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 187 185 3 188 3 0 0 24 43 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 189 188 3 191 3 1 1 24 43 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 190 188 3 191 3 0 0 23 42 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 192 191 3 194 3 1 1 22 41 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 193 191 3 194 3 0 0 21 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - C - - - ML 195 194 3 197 3 1 1 21 40 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 196 194 3 197 3 0 0 20 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - U - - - ML 198 197 3 200 3 1 1 20 39 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 199 197 3 200 3 0 0 19 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - G - - - ML 201 200 3 203 3 1 1 19 38 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - U - - - ML 204 203 3 206 3 1 1 18 36 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 205 203 3 206 3 0 0 17 36 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - C - - - ML 207 206 3 209 3 1 1 16 35 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - U - - - ML 210 209 3 212 3 1 1 15 33 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - G - - - ML 213 212 3 215 3 1 1 13 32 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - A - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 1.633 -2.029 -1.695 -1.539 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME sn2841 ACC RF01160 DESC Small nucleolar RNA sn2841 LENG 72 MAXL 163 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:01:50 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 2 EFFN 1.457031 CKSUM 2811479844 STATS LOCAL MSV -8.0438 0.72101 STATS LOCAL VITERBI -9.2434 0.72101 STATS LOCAL FORWARD -3.1354 0.72101 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21735 1.49973 1.53270 1.32861 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.76303 0.38337 2.45347 1.77582 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.51198 1.56977 2.18963 0.51276 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.29266 2.74145 0.26525 2.69542 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.74218 0.38706 2.44557 1.77288 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.57570 1.96937 1.19282 1.04917 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.19803 2.99562 0.27133 2.56907 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.17685 2.21775 2.67110 0.34450 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.19803 2.99562 0.27133 2.56907 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.26235 2.76493 2.53645 2.42327 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.27869 0.36405 2.83591 1.93753 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.19803 2.99562 0.27133 2.56907 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.26235 2.76493 2.53645 2.42327 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.17685 2.21775 2.67110 0.34450 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33418 3.73767 1.34606 1.46634 0.26236 1.09861 0.40547 14 1.77459 0.66068 2.29426 1.54594 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06440 3.46789 3.46789 1.46634 0.26236 0.16802 1.86648 15 0.26235 2.76493 2.53645 2.42327 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.26235 2.76493 2.53645 2.42327 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.77225 1.11385 2.29820 0.91300 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.77200 1.12315 2.29749 0.90574 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.27869 0.36405 2.83591 1.93753 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.17685 2.21775 2.67110 0.34450 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.17685 2.21775 2.67110 0.34450 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.26235 2.76493 2.53645 2.42327 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.27869 0.36405 2.83591 1.93753 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.27869 0.36405 2.83591 1.93753 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.17685 2.21775 2.67110 0.34450 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.26235 2.76493 2.53645 2.42327 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.27869 0.36405 2.83591 1.93753 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.17685 2.21775 2.67110 0.34450 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.26235 2.76493 2.53645 2.42327 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.17685 2.21775 2.67110 0.34450 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.19803 2.99562 0.27133 2.56907 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.26235 2.76493 2.53645 2.42327 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.27869 0.36405 2.83591 1.93753 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.26235 2.76493 2.53645 2.42327 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.26235 2.76493 2.53645 2.42327 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.26235 2.76493 2.53645 2.42327 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.26235 2.76493 2.53645 2.42327 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.26235 2.76493 2.53645 2.42327 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.27869 0.36405 2.83591 1.93753 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.26235 2.76493 2.53645 2.42327 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.26235 2.76493 2.53645 2.42327 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.17685 2.21775 2.67110 0.34450 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.19803 2.99562 0.27133 2.56907 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.19803 2.99562 0.27133 2.56907 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.17685 2.21775 2.67110 0.34450 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.17685 2.21775 2.67110 0.34450 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.26235 2.76493 2.53645 2.42327 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.19803 2.99562 0.27133 2.56907 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.26235 2.76493 2.53645 2.42327 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.27869 0.36405 2.83591 1.93753 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.19803 2.99562 0.27133 2.56907 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.17685 2.21775 2.67110 0.34450 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.17685 2.21775 2.67110 0.34450 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.26235 2.76493 2.53645 2.42327 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.27869 0.36405 2.83591 1.93753 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.17685 2.21775 2.67110 0.34450 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.27869 0.36405 2.83591 1.93753 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.19803 2.99562 0.27133 2.56907 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.17685 2.21775 2.67110 0.34450 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.26235 2.76493 2.53645 2.42327 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.27869 0.36405 2.83591 1.93753 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.17685 2.21775 2.67110 0.34450 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.19803 2.99562 0.27133 2.56907 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.17685 2.21775 2.67110 0.34450 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.27869 0.36405 2.83591 1.93753 65 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.17685 2.21775 2.67110 0.34450 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.19803 2.99562 0.27133 2.56907 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 0.26235 2.76493 2.53645 2.42327 68 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 69 2.04763 2.61163 0.33527 2.49618 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 70 2.92418 0.30901 2.57088 1.99767 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 71 0.58573 2.36509 1.40596 2.26117 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 72 2.05555 2.62011 0.33163 2.50801 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //