INFERNAL1/a [1.1.5 | Sep 2023] NAME sn1185 ACC RF01157 DESC Small nucleolar RNA sn1185 STATES 202 NODES 65 CLEN 66 W 83 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 09:40:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01157/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.928711 CKSUM 4177677021 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 67.20 NC 42.40 EFP7GF -9.6762 0.71882 ECMLC 0.64966 -6.17001 2.70911 1600000 384018 0.003125 ECMGC 0.43868 -17.02341 -3.98022 1600000 122174 0.003274 ECMLI 0.62145 -4.61260 4.28382 1600000 302161 0.003971 ECMGI 0.44247 -12.53983 -0.38004 1600000 86837 0.004606 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 83 103 -9.107 -9.047 -0.021 -7.823 -8.103 -8.498 IL 1 1 2 1 6 1 23 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 23 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 66 A U - - MP 3 2 3 7 6 2 24 83 103 -9.107 -9.047 -0.021 -7.823 -8.103 -8.498 -3.795 -2.826 -3.814 3.335 -4.154 -5.217 0.146 -3.856 -3.705 1.074 -4.253 -0.301 -0.271 -4.404 -1.795 -2.647 ML 4 2 3 7 6 1 20 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 81 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 15 79 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 22 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 22 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 65 U A - - MP 9 8 6 13 6 2 23 81 101 -9.107 -9.047 -0.021 -7.823 -8.103 -8.498 -4.196 -4.021 -4.034 -0.316 -2.974 -4.597 1.354 -3.671 -4.038 -0.063 -4.411 -1.920 3.331 -4.347 -0.650 -2.862 ML 10 8 6 13 6 1 19 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 18 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 15 78 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 20 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 20 80 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 64 C G - - MP 15 14 6 19 4 2 21 79 99 -6.948 -7.155 -0.053 -5.569 -4.556 -4.462 -4.244 -0.693 -2.961 -4.655 3.553 -3.772 -4.294 -0.454 -4.554 -2.409 0.553 -4.624 -0.667 -3.133 ML 16 14 6 19 4 1 18 79 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 16 79 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 14 77 98 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 20 80 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 21 20 6 23 3 1 19 77 97 -7.964 -0.021 -6.618 -0.028 -1.706 1.170 -1.112 D 22 20 6 23 3 0 14 75 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 24 23 3 26 3 1 19 76 96 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 25 23 3 26 3 0 13 74 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 27 26 3 29 3 1 18 75 95 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 28 26 3 29 3 0 12 73 93 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 30 29 3 32 3 1 17 74 94 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 31 29 3 32 3 0 11 72 92 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 33 32 3 35 3 1 16 72 93 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 34 32 3 35 3 0 11 71 91 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 36 35 3 38 3 1 16 71 92 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 37 35 3 38 3 0 10 70 90 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 39 38 3 41 3 1 15 70 91 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 40 38 3 41 3 0 9 69 89 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 42 41 3 44 3 1 14 69 89 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 43 41 3 44 3 0 8 68 88 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 45 44 3 47 3 1 13 68 88 -7.964 -0.021 -6.618 -0.596 -1.372 1.089 -0.278 D 46 44 3 47 3 0 8 67 87 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 48 47 3 50 3 1 13 67 87 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 49 47 3 50 3 0 7 66 86 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 51 50 3 53 3 1 12 66 86 -7.964 -0.021 -6.618 -0.828 -0.246 -1.573 1.175 D 52 50 3 53 3 0 6 65 85 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 54 53 3 56 3 1 11 65 85 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 55 53 3 56 3 0 5 64 84 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 57 56 3 59 3 1 11 64 84 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 58 56 3 59 3 0 5 63 83 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 60 59 3 62 3 1 10 63 83 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 61 59 3 62 3 0 4 62 82 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 63 62 3 65 3 1 9 62 82 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 64 62 3 65 3 0 3 61 81 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 66 65 3 68 3 1 8 61 81 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 67 65 3 68 3 0 2 60 80 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 69 68 3 71 3 1 8 60 80 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 70 68 3 71 3 0 2 58 79 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 72 71 3 74 3 1 7 59 79 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 73 71 3 74 3 0 1 57 77 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 75 74 3 77 3 1 7 58 78 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 76 74 3 77 3 0 0 56 76 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 78 77 3 80 3 1 6 57 77 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 79 77 3 80 3 0 0 55 75 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 81 80 3 83 3 1 5 56 76 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 82 80 3 83 3 0 0 54 74 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 84 83 3 86 3 1 5 55 74 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 85 83 3 86 3 0 0 53 73 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 87 86 3 89 3 1 4 54 73 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 88 86 3 89 3 0 0 52 72 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 90 89 3 92 3 1 4 53 72 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 91 89 3 92 3 0 0 51 71 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 93 92 3 95 3 1 3 52 71 -7.964 -0.021 -6.618 1.165 -1.161 -1.193 -0.197 D 94 92 3 95 3 0 0 50 70 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 96 95 3 98 3 1 3 51 70 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 97 95 3 98 3 0 0 49 69 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 99 98 3 101 3 1 2 49 69 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 100 98 3 101 3 0 0 48 68 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 102 101 3 104 3 1 2 48 68 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 103 101 3 104 3 0 0 47 67 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 105 104 3 107 3 1 2 47 67 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 106 104 3 107 3 0 0 46 66 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - a - - - ML 108 107 3 110 3 1 1 46 66 -7.964 -0.021 -6.618 0.865 -1.383 0.289 -0.803 D 109 107 3 110 3 0 0 45 65 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - u - - - ML 111 110 3 113 3 1 1 45 65 -7.964 -0.021 -6.618 -0.392 -0.887 0.001 0.762 D 112 110 3 113 3 0 0 44 64 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - u - - - ML 114 113 3 116 3 1 1 44 64 -7.964 -0.021 -6.618 -0.328 0.085 -0.518 0.530 D 115 113 3 116 3 0 0 43 62 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - G - - - ML 117 116 3 119 3 1 1 43 63 -7.964 -0.021 -6.618 -0.117 -1.760 1.225 -1.167 D 118 116 3 119 3 0 0 42 61 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 120 119 3 122 3 1 1 42 61 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 121 119 3 122 3 0 0 41 60 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 123 122 3 125 3 1 1 41 60 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 124 122 3 125 3 0 0 40 59 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 126 125 3 128 3 1 1 40 59 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 127 125 3 128 3 0 0 39 58 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 129 128 3 131 3 1 1 39 58 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 130 128 3 131 3 0 0 38 57 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 132 131 3 134 3 1 1 38 57 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 133 131 3 134 3 0 0 36 56 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 135 134 3 137 3 1 1 37 56 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 136 134 3 137 3 0 0 35 55 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 138 137 3 140 3 1 1 36 55 -7.964 -0.021 -6.618 1.242 -1.504 -0.377 -0.967 D 139 137 3 140 3 0 0 34 54 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 141 140 3 143 3 1 1 35 54 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 142 140 3 143 3 0 0 33 53 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 144 143 3 146 3 1 1 33 53 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 145 143 3 146 3 0 0 32 52 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 147 146 3 149 3 1 1 32 52 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 148 146 3 149 3 0 0 31 50 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 150 149 3 152 3 1 1 31 50 -7.964 -0.021 -6.618 -0.110 -0.889 -1.283 1.086 D 151 149 3 152 3 0 0 30 49 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - A - - - ML 153 152 3 155 3 1 1 30 49 -7.964 -0.021 -6.618 1.719 -2.371 -2.003 -1.914 D 154 152 3 155 3 0 0 29 48 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 156 155 3 158 3 1 1 29 48 -7.964 -0.021 -6.618 1.130 -1.127 -1.171 -0.137 D 157 155 3 158 3 0 0 28 47 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 159 158 3 161 3 1 1 28 47 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 160 158 3 161 3 0 0 27 46 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 162 161 3 164 3 1 1 27 46 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 163 161 3 164 3 0 0 26 45 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - U - - - ML 165 164 3 167 3 1 1 26 45 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - U - - - ML 168 167 3 170 3 1 1 25 44 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - C - - - ML 171 170 3 173 3 1 1 23 42 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - C - - - ML 174 173 3 176 3 1 1 22 41 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - C - - - ML 177 176 3 179 3 1 1 21 40 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - C - - - ML 180 179 3 182 3 1 1 20 39 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 183 182 3 185 3 1 1 19 37 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 186 185 3 188 3 1 1 18 36 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - C - - - ML 189 188 3 191 3 1 1 16 35 -7.964 -0.021 -6.618 -1.741 1.624 -2.565 -1.154 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 192 191 3 194 3 1 1 15 33 -7.964 -0.021 -6.618 -1.485 -1.482 -2.219 1.618 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - G - - - ML 195 194 3 197 3 1 1 13 31 -7.964 -0.021 -6.618 -1.580 -2.800 1.724 -2.187 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - A - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 1.719 -2.371 -2.003 -1.914 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sn1185 ACC RF01157 DESC Small nucleolar RNA sn1185 LENG 66 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 09:40:58 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01157/CM NSEQ 5 EFFN 2.036133 CKSUM 4177677021 STATS LOCAL MSV -8.1041 0.71882 STATS LOCAL VITERBI -8.8663 0.71882 STATS LOCAL FORWARD -3.6537 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42487 1.56296 1.44312 1.15915 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 0.00000 * 1 0.40747 2.60090 1.70392 2.54472 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 2 2.82085 1.78256 2.54195 0.36597 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 3 3.05597 0.27935 2.80365 1.99468 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 4 1.41443 2.60058 0.56052 2.19112 4 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 5 2.54123 3.39614 0.17853 2.97137 5 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 6 2.46780 2.45624 2.97891 0.25023 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 7 2.54123 3.39614 0.17853 2.97137 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 8 0.18309 3.08639 2.82562 2.77475 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 9 2.46780 2.45624 2.97891 0.25023 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 10 2.54123 3.39614 0.17853 2.97137 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 11 2.46780 2.45624 2.97891 0.25023 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 12 1.82359 2.36407 0.61481 1.59074 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 13 0.18309 3.08639 2.82562 2.77475 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 14 1.98671 1.55978 2.50525 0.56034 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 15 0.18309 3.08639 2.82562 2.77475 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 16 2.46780 2.45624 2.97891 0.25023 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 17 2.66106 0.24289 3.23402 2.24085 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 18 2.66106 0.24289 3.23402 2.24085 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 19 0.18309 3.08639 2.82562 2.77475 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 20 2.54123 3.39614 0.17853 2.97137 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 21 2.46780 2.45624 2.97891 0.25023 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 22 2.46780 2.45624 2.97891 0.25023 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 23 2.66106 0.24289 3.23402 2.24085 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 24 2.46780 2.45624 2.97891 0.25023 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 25 2.54123 3.39614 0.17853 2.97137 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 26 2.66106 0.24289 3.23402 2.24085 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 27 2.46780 2.45624 2.97891 0.25023 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 28 0.56794 2.20928 2.23368 1.53065 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 29 2.66106 0.24289 3.23402 2.24085 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 30 2.46780 2.45624 2.97891 0.25023 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 31 2.54123 3.39614 0.17853 2.97137 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 32 0.18309 3.08639 2.82562 2.77475 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 33 0.77878 2.36938 1.17828 1.96833 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 34 1.67265 2.01641 1.38074 0.84927 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 35 1.62528 1.32083 1.74619 1.01669 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 36 1.47833 2.63951 0.52241 2.23033 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 37 2.46780 2.45624 2.97891 0.25023 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 38 2.46780 2.45624 2.97891 0.25023 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 39 2.54123 3.39614 0.17853 2.97137 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 40 2.46780 2.45624 2.97891 0.25023 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 41 2.54123 3.39614 0.17853 2.97137 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 42 0.18309 3.08639 2.82562 2.77475 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 43 0.51431 2.45618 1.64939 2.08621 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 44 2.54123 3.39614 0.17853 2.97137 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 45 0.18309 3.08639 2.82562 2.77475 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 46 2.46780 2.45624 2.97891 0.25023 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 47 1.47046 2.02116 2.29740 0.62146 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 48 0.18309 3.08639 2.82562 2.77475 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 49 0.59287 2.18491 2.21754 1.48769 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 50 2.66106 0.24289 3.23402 2.24085 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 51 2.46780 2.45624 2.97891 0.25023 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 52 2.46780 2.45624 2.97891 0.25023 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 53 2.46780 2.45624 2.97891 0.25023 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 54 2.66106 0.24289 3.23402 2.24085 54 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 55 2.66106 0.24289 3.23402 2.24085 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 56 2.66106 0.24289 3.23402 2.24085 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 57 2.66106 0.24289 3.23402 2.24085 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 58 2.54123 3.39614 0.17853 2.97137 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 59 2.46780 2.45624 2.97891 0.25023 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 60 2.66106 0.24289 3.23402 2.24085 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 61 2.46780 2.45624 2.97891 0.25023 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 62 2.54123 3.39614 0.17853 2.97137 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 63 0.18309 3.08639 2.82562 2.77475 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 64 2.27441 2.97256 0.24112 2.80969 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 65 0.41617 2.72472 1.61937 2.56600 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.04184 3.88787 3.88787 1.46634 0.26236 1.09861 0.40547 66 2.78691 1.98186 2.41427 0.34088 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.02114 3.86716 * 1.46634 0.26236 0.00000 * //