# STOCKHOLM 1.0
#=GF ID sR1
#=GF AC RF01152
#=GF DE Small nucleolar RNA sR1
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 45.0
#=GF NC 44.1
#=GF TC 45.0
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 19.00 -Z 2958934 CM SEQDB
#=GF DR URL; http://lowelab.ucsc.edu/snoRNAdb/;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 10775111
#=GF RT Homologs of small nucleolar RNAs in Archaea.
#=GF RA Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP
#=GF RL Science. 2000;288:517-522.
#=GF WK Small_nucleolar_RNA
#=GF SQ 12

AJ248287.2/14879-14825     GGC-AAUGAUGAAGCCU-UCCGCACCUGAACG-GUGAGGAGUGGACG---GCUUCCUGA---GC
AE000782.1/711263-711211   GCC-GAUGAUGACUGAUGGGCGAC-CUGAGAA-AUGAUGAAAGGGAG---A--GUCUGA---GG
BA000001.2/762168-762222   GGC-GAUGAUGAAGCCU-UCCGCACCUGAAUG-AUGAGGAGUGGACG---GCUUCCUGA---GC
BA000002.3/143608-143554   GCC-GAUGAUGAGUUCUAGCCUUA-CGGACAC-GUGAAGACAGUGGC-CAG--GCCUGA---GG
L77117.1/29609-29554       GCA-GAUGAUGACGUUUAUCCCCGUCUGAGUU-AUGAUGA--GUAGC-AAGCCGGCUGA---UG
BA000001.2/1328943-1328887 GGC-GAUGAUGAGUGAUGGGCGAA-CUGAAAACAUGAUGAAGGUAGG-UGAUCU-CUGA---GC
CP000077.1/1175551-1175494 GGCUAAUGAUGAGGGUUAAAAGCG-CUUAUUG-AUGAUGA---ACCU-CUACCUACUGAAGAGC
AF254826.1/2-57            GGC-GAUGAUGAGUGAUGGGCGAA-CUGAGAA-GUGAUGAUGGUAGG-UGAUCU-CUGA---GC
AP006878.1/1626447-1626391 UGC-GAUGAUGAGUGAUGGGCGAA-CCGACCG-GUGAGGAAGGAAAGGUGAUCG-CUGA---GC
BA000023.2/1214437-1214490 CCC-GAUGAUGAUGGUUAAAAGCG-CUUAUCG-GUGACGA---GCCU-CUACCUGCUGA---GG
AE009950.1/1288110-1288166 GGC-AAUGAUGAGUGAUGGGCGAA-CUGAAAUAGUGAUGACGGUAGG-UGAUCU-CUGA---GC
AE009950.1/678049-678103   GGC-GAUGAUGAUGCCU-UCCGCACCUGAUUG-GUGAGGAGUGGACG---GCUUCCUGA---GC
#=GC SS_cons               :::.::::::::::::::::::::.:::::::.::::::::::::::.:::::::::::...::
#=GC RF                    GGC.GAUGAUGAgggaUggcCGcA.CUGAaag.GUGAuGAagGuAgG.ugACCUcCUGA...GC
//
