INFERNAL1/a [1.1.5 | Sep 2023] NAME sR19 ACC RF01142 DESC Small nucleolar RNA sR19 STATES 193 NODES 65 CLEN 63 W 145 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 23:55:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01142/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.657227 CKSUM 983804416 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 59.50 NC 37.20 EFP7GF -8.9372 0.71885 ECMLC 0.73856 -9.21387 -0.47940 1600000 759956 0.001579 ECMGC 0.42067 -19.04773 -5.57962 1600000 115501 0.003463 ECMLI 0.63064 -8.63049 0.54579 1600000 391227 0.003067 ECMGI 0.48829 -10.62057 0.06568 1600000 73823 0.005418 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 145 229 -7.219 -7.426 -0.044 -5.840 IL 1 1 2 1 4 1 20 147 231 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 147 231 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 20 145 229 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 4 2 3 5 3 0 15 142 226 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 21 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 144 228 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 7 5 3 8 3 0 14 141 224 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 21 150 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 18 143 226 -5.602 -0.061 -5.602 0.166 -0.887 -0.948 0.863 D 10 8 3 11 3 0 14 139 223 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 20 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 18 141 225 -5.602 -0.061 -5.602 -1.121 0.278 -1.295 0.941 D 13 11 3 14 3 0 13 138 221 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 19 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 17 140 223 -5.602 -0.061 -5.602 0.775 -1.264 0.422 -0.910 D 16 14 3 17 3 0 12 137 220 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 19 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 16 139 222 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 19 17 3 20 3 0 12 135 218 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 15 137 220 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 22 20 3 23 3 0 11 134 217 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 17 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 15 136 219 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 25 23 3 26 3 0 10 133 215 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 16 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 14 135 217 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 28 26 3 29 3 0 9 131 214 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 16 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 13 133 216 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 31 29 3 32 3 0 9 130 212 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 15 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 13 132 214 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 34 32 3 35 3 0 8 129 211 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 14 138 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 12 131 213 -5.602 -0.061 -5.602 0.064 -1.514 1.109 -1.160 D 37 35 3 38 3 0 7 127 209 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 11 129 211 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 40 38 3 41 3 0 7 126 208 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 13 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 11 128 210 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 43 41 3 44 3 0 6 125 206 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 12 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 10 127 208 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 46 44 3 47 3 0 5 123 205 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 12 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 9 125 207 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 49 47 3 50 3 0 5 122 203 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 9 124 205 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 52 50 3 53 3 0 4 121 202 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 10 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 8 122 204 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 55 53 3 56 3 0 4 119 200 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 8 121 202 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 58 56 3 59 3 0 3 118 198 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 7 120 200 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 61 59 3 62 3 0 2 116 197 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 9 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 6 118 199 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 64 62 3 65 3 0 2 115 195 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 6 117 197 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 67 65 3 68 3 0 1 114 194 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 7 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 5 116 196 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 70 68 3 71 3 0 1 112 192 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 5 114 194 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 73 71 3 74 3 0 0 111 191 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 4 113 193 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 76 74 3 77 3 0 0 109 189 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 4 111 191 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 79 77 3 80 3 0 0 108 187 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - c - - - ML 81 80 3 83 3 1 3 110 189 -5.602 -0.061 -5.602 -1.213 0.930 -1.393 0.359 D 82 80 3 83 3 0 0 107 186 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 3 108 188 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 85 83 3 86 3 0 0 105 184 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 87 86 3 89 3 1 2 107 186 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 88 86 3 89 3 0 0 104 183 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 2 106 185 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 91 89 3 92 3 0 0 102 181 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 2 104 183 -2.296 -0.366 -5.602 -1.979 1.648 -2.180 -1.349 D 94 92 3 95 3 0 0 101 180 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 104 183 -5.516 -0.032 -13.160 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 96 95 3 98 3 1 1 103 182 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 97 95 3 98 3 0 0 100 178 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - c - - - ML 99 98 3 101 3 1 1 102 180 -5.602 -0.061 -5.602 -1.210 0.923 -1.390 0.368 D 100 98 3 101 3 0 0 98 176 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 1 100 178 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 103 101 3 104 3 0 0 97 175 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - c - - - ML 105 104 3 107 3 1 1 99 177 -5.602 -0.061 -5.602 -0.945 0.776 0.200 -0.692 D 106 104 3 107 3 0 0 95 173 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - G - - - ML 108 107 3 110 3 1 1 97 175 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 109 107 3 110 3 0 0 94 171 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 111 110 3 113 3 1 1 96 173 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 112 110 3 113 3 0 0 92 170 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 1 94 172 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 115 113 3 116 3 0 0 91 168 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 1 93 170 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 118 116 3 119 3 0 0 89 166 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 120 119 3 122 3 1 1 91 168 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 121 119 3 122 3 0 0 88 164 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 123 122 3 125 3 1 1 90 167 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 124 122 3 125 3 0 0 86 163 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - A - - - ML 126 125 3 128 3 1 1 88 165 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 127 125 3 128 3 0 0 85 161 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 129 128 3 131 3 1 1 87 163 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 130 128 3 131 3 0 0 83 159 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 132 131 3 134 3 1 1 85 161 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 133 131 3 134 3 0 0 81 157 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 135 134 3 137 3 1 1 84 159 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 136 134 3 137 3 0 0 80 155 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - A - - - ML 138 137 3 140 3 1 1 82 157 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 139 137 3 140 3 0 0 78 153 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 141 140 3 143 3 1 1 80 156 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 142 140 3 143 3 0 0 77 151 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - A - - - ML 144 143 3 146 3 1 1 79 154 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 145 143 3 146 3 0 0 75 149 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 147 146 3 149 3 1 1 77 152 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 148 146 3 149 3 0 0 73 147 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - A - - - ML 150 149 3 152 3 1 1 75 150 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 151 149 3 152 3 0 0 72 145 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - G - - - ML 153 152 3 155 3 1 1 74 148 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 154 152 3 155 3 0 0 70 143 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - C - - - ML 156 155 3 158 3 1 1 72 146 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 157 155 3 158 3 0 0 68 141 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - C - - - ML 159 158 3 161 3 1 1 70 144 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 160 158 3 161 3 0 0 66 139 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - A - - - ML 162 161 3 164 3 1 1 68 141 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 163 161 3 164 3 0 0 64 137 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - G - - - ML 165 164 3 167 3 1 1 66 139 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 166 164 3 167 3 0 0 62 134 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - G - - - ML 168 167 3 170 3 1 1 65 137 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 169 167 3 170 3 0 0 60 132 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 171 170 3 173 3 1 1 62 134 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 172 170 3 173 3 0 0 58 129 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - C - - - ML 174 173 3 176 3 1 1 60 132 -5.602 -0.061 -5.602 -1.979 1.648 -2.180 -1.349 D 175 173 3 176 3 0 0 55 126 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - U - - - ML 177 176 3 179 3 1 1 58 129 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 178 176 3 179 3 0 0 53 123 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - G - - - ML 180 179 3 182 3 1 1 55 126 -5.602 -0.061 -5.602 -1.778 -2.546 1.735 -2.263 D 181 179 3 182 3 0 0 49 119 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - A - - - ML 183 182 3 185 3 1 1 53 122 -5.602 -0.061 -5.602 1.720 -2.262 -2.002 -2.018 D 184 182 3 185 3 0 0 45 114 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - U - - - ML 186 185 3 188 3 1 1 48 118 -5.602 -0.061 -5.602 -1.725 -1.388 -1.887 1.606 D 187 185 3 188 3 0 0 32 101 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - u - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -0.812 -0.926 0.191 0.817 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sR19 ACC RF01142 DESC Small nucleolar RNA sR19 LENG 63 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 23:55:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01142/CM NSEQ 3 EFFN 2.657227 CKSUM 983804416 STATS LOCAL MSV -8.2248 0.71885 STATS LOCAL VITERBI -8.6888 0.71885 STATS LOCAL FORWARD -3.7143 0.71885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41638 1.39698 1.24798 1.50067 1.38629 1.38629 1.38629 1.38629 0.02500 5.00382 4.01865 0.39730 1.11515 0.00000 * 1 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 2 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 3 1.27099 2.00143 2.04351 0.78805 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 4 2.16362 1.19367 2.28399 0.73375 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 5 0.84891 2.26276 1.09369 2.01681 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 6 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 7 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 8 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 9 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 10 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 11 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 12 1.34160 2.43577 0.61768 2.19060 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 13 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 14 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 15 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 16 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 17 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 18 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 19 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 20 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 21 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 22 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 23 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 24 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 25 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 26 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 27 2.22721 0.74165 2.35214 1.13731 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 28 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 29 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 30 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 31 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.25393 1.59127 3.88305 0.02209 3.82347 1.09861 0.40547 32 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 33 2.22515 0.74674 2.34995 1.13114 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 34 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 35 2.04108 0.84830 1.24735 1.86624 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 36 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 37 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 38 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 39 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 40 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 41 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 42 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 43 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 44 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 45 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 46 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 47 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 48 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 49 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 50 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 51 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 52 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 53 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 54 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 55 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 56 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 57 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 58 2.75781 0.24430 2.89747 2.32123 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 59 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 60 2.61844 3.15079 0.18372 2.95473 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 61 0.19389 2.95412 2.77401 2.78522 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 62 2.58172 2.34819 2.69432 0.27283 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88305 3.88305 1.46634 0.26236 1.09861 0.40547 63 1.94931 2.02793 1.25367 0.81970 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //