INFERNAL1/a [1.1.4 | Dec 2020] NAME sR42 ACC RF01127 DESC Small nucleolar RNA sR42 STATES 193 NODES 65 CLEN 63 W 144 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:01:01 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 3.000000 CKSUM 1393580191 NULL 0.000 0.000 0.000 0.000 GA 38.00 TC 38.50 NC 34.40 EFP7GF -8.7731 0.71984 ECMLC 0.69888 -9.18924 -0.36775 1600000 571044 0.002101 ECMGC 0.41627 -18.53113 -5.20446 1600000 102640 0.003897 ECMLI 0.61744 -8.61975 0.57830 1600000 351280 0.003416 ECMGI 0.47063 -11.12377 -0.09911 1600000 71680 0.005580 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 144 227 -7.331 -7.538 -0.041 -5.952 IL 1 1 2 1 4 1 21 146 230 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 146 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 144 228 -5.700 -0.057 -5.700 -1.231 0.366 -1.410 0.933 D 4 2 3 5 3 0 15 141 224 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 22 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 19 143 226 -5.700 -0.057 -5.700 0.121 -0.827 0.168 0.292 D 7 5 3 8 3 0 15 140 223 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 21 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 19 142 225 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 10 8 3 11 3 0 14 139 221 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 20 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 141 223 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 13 11 3 14 3 0 13 137 220 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 20 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 17 139 222 -5.700 -0.057 -5.700 0.866 -1.366 0.371 -1.012 D 16 14 3 17 3 0 13 136 218 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 19 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 16 138 220 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 19 17 3 20 3 0 12 135 217 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 18 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 16 137 219 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 22 20 3 23 3 0 11 133 216 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 17 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 15 135 217 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 25 23 3 26 3 0 10 132 214 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 17 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 14 134 216 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 28 26 3 29 3 0 10 131 213 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 16 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 14 133 215 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 31 29 3 32 3 0 9 129 211 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 15 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 13 131 213 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 34 32 3 35 3 0 8 128 210 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 12 130 212 -5.700 -0.057 -5.700 0.272 -0.956 -1.013 0.833 D 37 35 3 38 3 0 8 127 208 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 14 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 12 129 210 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 40 38 3 41 3 0 7 125 207 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 11 127 209 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 43 41 3 44 3 0 6 124 205 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 10 126 207 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 46 44 3 47 3 0 6 123 204 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 12 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 10 125 206 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 49 47 3 50 3 0 5 121 202 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 9 123 204 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 52 50 3 53 3 0 4 120 201 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 11 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 8 122 203 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 55 53 3 56 3 0 4 119 199 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 10 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 57 56 3 59 3 1 8 120 201 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 58 56 3 59 3 0 3 117 197 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 7 119 199 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 61 59 3 62 3 0 2 116 196 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 7 118 198 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 64 62 3 65 3 0 2 114 194 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 8 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 6 116 196 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 67 65 3 68 3 0 1 113 193 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 5 115 195 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 70 68 3 71 3 0 1 112 191 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 5 114 193 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 73 71 3 74 3 0 0 110 190 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 6 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 4 112 192 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 76 74 3 77 3 0 0 109 188 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 4 111 190 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 79 77 3 80 3 0 0 107 187 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 3 109 189 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 82 80 3 83 3 0 0 106 185 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 3 108 187 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 85 83 3 86 3 0 0 105 183 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 3 107 185 -2.109 -0.417 -5.700 -1.931 -2.762 1.770 -2.482 D 88 86 3 89 3 0 0 103 182 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 107 186 -0.991 -1.009 -14.449 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 90 89 3 92 3 1 2 105 184 -5.700 -0.057 -5.700 0.778 0.274 -1.096 -0.716 D 91 89 3 92 3 0 0 102 180 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - g - - - ML 93 92 3 95 3 1 2 104 182 -5.700 -0.057 -5.700 -0.921 -1.148 0.871 0.253 D 94 92 3 95 3 0 0 100 178 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 3 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - a - - - ML 96 95 3 98 3 1 2 102 181 -5.700 -0.057 -5.700 0.874 -1.366 0.360 -1.012 D 97 95 3 98 3 0 0 99 177 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - c - - - ML 99 98 3 101 3 1 1 101 179 -5.700 -0.057 -5.700 0.279 0.812 -1.189 -0.755 D 100 98 3 101 3 0 0 97 175 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - a - - - ML 102 101 3 104 3 1 1 99 177 -5.700 -0.057 -5.700 0.208 -0.007 0.179 -0.477 D 103 101 3 104 3 0 0 96 174 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - c - - - ML 105 104 3 107 3 1 1 98 176 -5.700 -0.057 -5.700 0.279 0.812 -1.189 -0.755 D 106 104 3 107 3 0 0 94 172 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - u - - - ML 108 107 3 110 3 1 1 96 174 -5.700 -0.057 -5.700 0.272 -0.956 -1.013 0.833 D 109 107 3 110 3 0 0 93 170 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - C - - - ML 111 110 3 113 3 1 1 95 172 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 112 110 3 113 3 0 0 91 169 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 114 113 3 116 3 1 1 93 171 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 115 113 3 116 3 0 0 90 167 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - A - - - ML 117 116 3 119 3 1 1 92 169 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 118 116 3 119 3 0 0 89 165 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 120 119 3 122 3 1 1 90 167 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 121 119 3 122 3 0 0 87 163 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - G - - - ML 123 122 3 125 3 1 1 89 165 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 124 122 3 125 3 0 0 85 162 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 126 125 3 128 3 1 1 87 164 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 127 125 3 128 3 0 0 84 160 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 129 128 3 131 3 1 1 86 162 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 130 128 3 131 3 0 0 82 158 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 132 131 3 134 3 1 1 84 160 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 133 131 3 134 3 0 0 81 156 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 135 134 3 137 3 1 1 83 158 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 136 134 3 137 3 0 0 79 154 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 1 81 157 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 139 137 3 140 3 0 0 78 153 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - C - - - ML 141 140 3 143 3 1 1 80 155 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 142 140 3 143 3 0 0 76 151 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 1 78 153 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 145 143 3 146 3 0 0 74 149 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - C - - - ML 147 146 3 149 3 1 1 76 151 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 148 146 3 149 3 0 0 73 147 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - C - - - ML 150 149 3 152 3 1 1 75 149 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 151 149 3 152 3 0 0 71 145 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - C - - - ML 153 152 3 155 3 1 1 73 147 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 154 152 3 155 3 0 0 69 143 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 156 155 3 158 3 1 1 71 145 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 157 155 3 158 3 0 0 67 141 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - C - - - ML 159 158 3 161 3 1 1 70 143 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 160 158 3 161 3 0 0 66 138 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - U - - - ML 162 161 3 164 3 1 1 68 141 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 163 161 3 164 3 0 0 64 136 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - C - - - ML 165 164 3 167 3 1 1 66 139 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 166 164 3 167 3 0 0 62 134 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - a - - - ML 168 167 3 170 3 1 1 64 136 -5.700 -0.057 -5.700 0.759 -1.371 0.513 -1.015 D 169 167 3 170 3 0 0 60 131 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - a - - - ML 171 170 3 173 3 1 1 62 134 -5.700 -0.057 -5.700 0.753 -0.969 -0.991 0.379 D 172 170 3 173 3 0 0 57 129 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - C - - - ML 174 173 3 176 3 1 1 60 131 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 175 173 3 176 3 0 0 55 126 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - U - - - ML 177 176 3 179 3 1 1 58 129 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 178 176 3 179 3 0 0 52 123 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - G - - - ML 180 179 3 182 3 1 1 55 126 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 181 179 3 182 3 0 0 49 119 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - A - - - ML 183 182 3 185 3 1 1 52 122 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 184 182 3 185 3 0 0 44 114 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - U - - - ML 186 185 3 188 3 1 1 48 117 -5.700 -0.057 -5.700 -1.239 0.242 -1.418 1.014 D 187 185 3 188 3 0 0 32 101 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - c - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.310 0.912 -1.495 0.444 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME sR42 ACC RF01127 DESC Small nucleolar RNA sR42 LENG 63 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:01:01 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 3.000000 STATS LOCAL MSV -8.3674 0.71984 STATS LOCAL VITERBI -8.9112 0.71984 STATS LOCAL FORWARD -3.8470 0.71984 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46217 1.29349 1.42212 1.37534 1.38629 1.38629 1.38629 1.38629 0.02311 5.08141 4.09624 0.39730 1.11515 0.00000 * 1 2.23923 1.13276 2.36359 0.73975 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 1.30210 1.95927 1.26976 1.18359 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.78604 2.33329 1.12888 2.08760 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 1.19776 2.04884 2.08877 0.80877 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.28897 1.46216 3.95124 0.69943 0.68691 1.09861 0.40547 30 0.84727 1.19654 2.14618 1.88224 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.02462 2.18216 0.78238 1.21120 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.78028 2.33347 1.13688 2.08791 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 1.19307 0.82337 2.21067 1.90965 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 1.24229 1.39129 1.26256 1.71705 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 1.19307 0.82337 2.21067 1.90965 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 1.19776 2.04884 2.08877 0.80877 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 0.86052 2.33693 1.03074 2.08996 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 0.86407 2.05800 2.07338 1.12366 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 2.24493 1.21824 2.36937 0.68364 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 63 2.29425 0.75432 2.42257 1.07840 - c - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //