# STOCKHOLM 1.0
#=GF ID sR39
#=GF AC RF01122
#=GF DE Small nucleolar RNA sR39
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 50.0
#=GF NC 35.4
#=GF TC 73.7
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 19.76 -Z 2958934 CM SEQDB
#=GF DR URL; http://lowelab.ucsc.edu/snoRNAdb/;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 15987815
#=GF RT The Cm56 tRNA modification in archaea is catalyzed either by a specific
#=GF RT 2'-O-methylase, or a C/D sRNP.
#=GF RA Renalier MH, Joseph N, Gaspin C, Thebault P, Mougin A
#=GF RL RNA. 2005;11:1051-1063.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

AJ248284.1/236815-236761   GGCGAUGAAGAAAAUUUCGCUAGCUGAAAAGU-----GAUGAGUACCCUCGCAACUGAGC
BA000001.2/1411664-1411723 GGUGAUGAGGAAAAUUUCGCUAGCUGAAGUGAAAGAUGAUGAAUACCCUCGCAACCGAGC
AP006878.1/832424-832370   GGCGAUGACGACAAUUUCGCUAGCUGACCGGU-----GAUGACUACCCUCGCAACCGAGC
DQ516907.1/5418-5363       GGCGAUGAUGACAAUUUCGCUAUCUGAUUCUG----UGAUGACUACUCCCGCAGCUGAGC
M97860.2/1902-1843         GGCGAUGAAGAUAAUUUCGCUAGCCGAAAAAUAAGAUGAGGAGUACCCUCGCAACUGAGC
#=GC SS_cons               ::::::::::::::::::::::::::::::::....::::::::::::::::::::::::
#=GC RF                    GGCGAUGAaGAcAAUUUCGCUAGCUGAaaagu....UGAUGAgUACCCUCGCAACuGAGC
//
