INFERNAL1/a [1.1.4 | Dec 2020] NAME sR38 ACC RF01121 DESC Small nucleolar RNA sR38 STATES 181 NODES 61 CLEN 59 W 140 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:00:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.721680 CKSUM 1089693154 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 69.60 NC 35.00 EFP7GF -9.0749 0.71897 ECMLC 0.77101 -8.69577 -0.26562 1600000 797983 0.001504 ECMGC 0.40980 -19.59043 -5.40546 1600000 133840 0.002989 ECMLI 0.61747 -9.33987 0.58997 1600000 552058 0.002174 ECMGI 0.44014 -12.38357 -0.21515 1600000 84734 0.004721 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 140 223 -7.241 -7.448 -0.043 -5.862 IL 1 1 2 1 4 1 18 142 225 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 141 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 17 140 223 -5.621 -0.060 -5.621 0.059 -1.542 1.122 -1.188 D 4 2 3 5 3 0 12 137 220 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 19 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 16 139 222 -5.621 -0.060 -5.621 -0.826 -0.940 0.197 0.823 D 7 5 3 8 3 0 12 135 218 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 15 137 220 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 10 8 3 11 3 0 11 134 217 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 17 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 15 136 219 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 13 11 3 14 3 0 10 133 215 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 16 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 14 135 217 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 16 14 3 17 3 0 9 131 214 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 16 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 13 133 216 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 19 17 3 20 3 0 9 130 212 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 15 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 13 132 214 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 22 20 3 23 3 0 8 129 211 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 14 138 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 12 131 213 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 25 23 3 26 3 0 7 127 209 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 11 129 211 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 28 26 3 29 3 0 7 126 208 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 13 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 11 128 210 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 31 29 3 32 3 0 6 125 206 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 12 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 10 126 208 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 34 32 3 35 3 0 5 123 205 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 12 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 9 125 207 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 37 35 3 38 3 0 5 122 203 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 11 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 9 124 205 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 40 38 3 41 3 0 4 121 202 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 10 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 8 122 204 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 43 41 3 44 3 0 4 119 200 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 8 121 202 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 46 44 3 47 3 0 3 118 199 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 9 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 7 120 201 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 49 47 3 50 3 0 2 116 197 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 9 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 6 118 199 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 52 50 3 53 3 0 2 115 195 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 6 117 197 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 55 53 3 56 3 0 1 114 194 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 7 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 5 116 196 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 58 56 3 59 3 0 1 112 192 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 7 122 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 5 114 194 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 61 59 3 62 3 0 0 111 191 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 4 113 193 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 64 62 3 65 3 0 0 109 189 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 4 111 191 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 67 65 3 68 3 0 0 108 188 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 5 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 3 110 190 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 70 68 3 71 3 0 0 107 186 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 3 109 188 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 73 71 3 74 3 0 0 105 184 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 4 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 2 107 186 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 76 74 3 77 3 0 0 104 183 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 2 106 185 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 79 77 3 80 3 0 0 102 181 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 3 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - g - - - ML 81 80 3 83 3 1 2 104 183 -5.621 -0.060 -5.621 -0.875 -1.117 0.909 0.159 D 82 80 3 83 3 0 0 101 179 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 1 103 182 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 85 83 3 86 3 0 0 99 178 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 1 101 180 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 88 86 3 89 3 0 0 98 176 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 2 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 1 100 178 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 91 89 3 92 3 0 0 97 174 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 1 98 177 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 94 92 3 95 3 0 0 95 173 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - u - - - ML 96 95 3 98 3 1 1 97 175 -5.621 -0.060 -5.621 0.133 -0.797 0.212 0.226 D 97 95 3 98 3 0 0 94 171 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - c - - - ML 99 98 3 101 3 1 1 96 173 -5.621 -0.060 -5.621 -1.239 0.944 -1.420 0.354 D 100 98 3 101 3 0 0 92 169 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 1 94 171 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 103 101 3 104 3 0 0 91 168 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 101 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 105 104 3 107 3 1 1 93 170 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 106 104 3 107 3 0 0 89 166 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 1 91 168 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 109 107 3 110 3 0 0 88 164 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 1 90 166 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 112 110 3 113 3 0 0 86 162 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 1 88 165 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 115 113 3 116 3 0 0 84 161 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 1 87 163 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 118 116 3 119 3 0 0 83 159 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 1 85 161 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 121 119 3 122 3 0 0 81 157 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 123 122 3 125 3 1 1 83 159 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 124 122 3 125 3 0 0 80 155 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 1 82 157 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 127 125 3 128 3 0 0 78 153 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 129 128 3 131 3 1 1 80 155 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 130 128 3 131 3 0 0 76 151 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 132 131 3 134 3 1 1 79 154 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 133 131 3 134 3 0 0 75 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 135 134 3 137 3 1 1 77 152 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 136 134 3 137 3 0 0 73 147 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 1 75 150 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 139 137 3 140 3 0 0 71 145 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 83 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 141 140 3 143 3 1 1 74 148 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 142 140 3 143 3 0 0 70 143 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 72 146 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 145 143 3 146 3 0 0 68 141 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 70 143 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 148 146 3 149 3 0 0 66 139 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 150 149 3 152 3 1 1 68 141 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 151 149 3 152 3 0 0 64 137 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - C - - - ML 153 152 3 155 3 1 1 66 139 -5.621 -0.060 -5.621 -2.018 1.658 -2.222 -1.382 D 154 152 3 155 3 0 0 62 134 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 64 137 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 157 155 3 158 3 0 0 60 132 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 159 158 3 161 3 1 1 62 134 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 160 158 3 161 3 0 0 58 129 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 60 132 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 163 161 3 164 3 0 0 55 126 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 58 129 -5.621 -0.060 -5.621 -1.762 -1.418 -1.926 1.617 D 166 164 3 167 3 0 0 53 123 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - G - - - ML 168 167 3 170 3 1 1 55 126 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 169 167 3 170 3 0 0 49 119 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 52 122 -5.621 -0.060 -5.621 1.730 -2.310 -2.049 -2.067 D 172 170 3 173 3 0 0 45 114 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 48 118 -5.621 -0.060 -5.621 -1.807 -2.588 1.742 -2.305 D 175 173 3 176 3 0 0 32 101 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -2.018 1.658 -2.222 -1.382 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME sR38 ACC RF01121 DESC Small nucleolar RNA sR38 LENG 59 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:00:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.721680 STATS LOCAL MSV -7.9199 0.71897 STATS LOCAL VITERBI -8.7539 0.71897 STATS LOCAL FORWARD -3.7292 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22749 1.56370 1.23902 1.57047 1.38629 1.38629 1.38629 1.38629 0.02462 5.01888 4.03370 0.39730 1.11515 0.00000 * 1 1.34560 2.45481 0.60881 2.20966 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 2 1.95911 2.03801 1.24978 0.81608 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 3 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 4 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 5 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 6 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 7 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 8 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 9 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 10 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 11 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 12 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 13 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 14 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 15 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 16 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 17 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 18 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 19 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 20 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 21 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 22 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 23 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 24 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 25 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 26 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 27 1.99314 2.16020 0.75653 1.27604 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 28 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 29 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 30 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 31 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 32 1.29415 1.93846 1.23923 1.22985 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 33 2.24476 0.73180 2.37070 1.14072 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 34 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 35 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 36 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 37 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 38 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 39 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 40 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 41 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 42 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 43 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 44 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 45 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 46 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 47 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 48 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 49 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 50 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 51 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 52 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 53 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 54 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 55 2.60737 2.36940 2.72113 0.26535 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 56 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 57 0.18691 2.98715 2.80674 2.81931 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 58 2.63909 3.17995 0.17864 2.98427 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04149 3.89623 3.89623 1.46634 0.26236 1.09861 0.40547 59 2.78521 0.23725 2.92652 2.34441 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //