INFERNAL1/a [1.1.4 | Dec 2020] NAME Yfr1 ACC RF01116 DESC Cyanobacterial functional RNA 1 STATES 186 NODES 50 CLEN 59 W 90 ALPH RNA RF no CONS yes MAP yes DATE Fri Feb 28 01:25:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 37 EFFN 5.704468 CKSUM 2280054883 NULL 0.000 0.000 0.000 0.000 GA 38.00 TC 38.30 NC 37.50 EFP7GF -12.9064 0.71952 ECMLC 0.58858 -9.66611 0.76406 1600000 556277 0.002157 ECMGC 0.43827 -19.27326 -5.97161 1600000 136099 0.002939 ECMLI 0.56468 -8.04994 2.19489 1600000 390460 0.003073 ECMGI 0.46286 -13.94129 -2.26809 1600000 88835 0.004503 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 90 125 -7.853 -9.099 -0.040 -5.552 IL 1 1 2 1 4 1 17 91 126 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 92 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 73 - U - - MR 3 2 3 5 3 1 16 90 125 -9.304 -0.010 -7.621 -3.321 -3.034 -4.106 1.895 D 4 2 3 5 3 0 14 89 123 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 91 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 72 - U - - MR 6 5 3 8 2 1 15 89 124 -1.721 -0.521 -2.496 -1.644 -3.242 1.764 D 7 5 3 8 2 0 14 88 123 -4.432 -0.068 IR 8 8 3 8 2 1 15 89 124 -3.517 -0.132 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 72 0 14 88 123 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 0 38 60 -0.123 -7.458 -3.826 -7.505 [ MATP 5 ] 1 24 g c - - MP 11 10 1 15 6 2 2 39 60 -9.526 -9.466 -0.016 -8.242 -8.522 -8.917 -4.213 -2.927 -4.189 1.805 -5.285 -5.126 -0.587 -4.607 -4.250 2.747 -4.675 1.922 -0.819 -4.326 -2.553 -3.050 ML 12 10 1 15 6 1 1 37 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 37 58 -7.862 -6.591 -2.500 -6.569 -0.393 -4.783 -0.274 0.058 -0.983 0.701 D 14 10 1 15 6 0 0 34 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 38 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 38 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 23 u a - - MP 17 16 6 21 6 2 2 37 58 -9.526 -9.466 -0.016 -8.242 -8.522 -8.917 -4.828 -4.798 -4.553 -0.897 -3.225 -5.001 2.587 -4.017 -4.559 -0.732 -4.878 -2.713 2.932 -4.892 -0.870 -3.370 ML 18 16 6 21 6 1 1 35 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 35 57 -7.862 -6.591 -0.663 -6.569 -1.703 -4.783 0.349 0.203 -0.789 -0.006 D 20 16 6 21 6 0 0 32 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 36 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 36 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 22 G C - - MP 23 22 6 27 6 2 2 35 56 -9.602 -9.541 -0.071 -8.318 -8.598 -4.646 -6.580 -4.013 -7.154 -1.136 -7.719 -5.376 -2.633 -7.323 -5.365 3.882 -5.613 -1.828 -2.993 -5.613 -4.821 -6.007 ML 24 22 6 27 6 1 1 33 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 33 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 31 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 34 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 34 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 21 g c - - MP 29 28 6 33 6 2 2 33 54 -9.546 -9.486 -0.016 -8.262 -8.542 -8.937 -1.416 -1.941 -1.951 1.091 -0.444 -2.799 1.407 -1.740 -1.668 1.969 -1.917 -0.579 1.226 -2.088 -0.183 -0.922 ML 30 28 6 33 6 1 1 31 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 31 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 30 52 -9.979 -8.678 -0.943 -5.157 -5.174 -1.250 IL 33 33 5 33 6 1 1 32 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 32 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 20 G C - - MP 35 34 6 39 6 2 2 31 52 -9.602 -9.541 -0.044 -5.453 -8.598 -8.993 -4.360 -3.009 -4.300 2.224 -5.411 -5.053 -0.620 -4.785 -4.407 3.067 -4.785 0.037 -0.865 -4.321 -2.608 -3.186 ML 36 34 6 39 6 1 1 29 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 29 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 30 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 19 g c - - MP 41 40 6 45 6 2 2 29 50 -9.574 -9.513 -0.076 -8.289 -6.085 -5.023 -4.511 -3.133 -4.521 0.980 -5.768 -5.462 -1.001 -4.889 -4.451 2.931 -4.896 2.279 -1.218 -4.701 -2.980 -3.338 ML 42 40 6 45 6 1 1 27 49 -6.703 -7.049 -0.826 -1.458 -6.899 -4.429 -0.066 0.476 -0.768 0.093 MR 43 40 6 45 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 28 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 18 g c - - MP 47 46 6 51 6 2 2 27 48 -9.543 -9.483 -0.074 -8.259 -8.539 -4.587 -3.833 -2.706 -3.749 2.147 -4.424 -4.451 0.718 -4.247 -4.018 2.781 -4.369 0.075 -0.108 -3.709 -1.797 -2.709 ML 48 46 6 51 6 1 1 25 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 25 46 -7.242 -5.971 -1.880 -5.949 -0.658 -4.163 0.813 -0.698 -0.421 -0.185 D 50 46 6 51 6 0 0 22 44 -9.791 -8.489 -4.286 -4.968 -4.986 -0.182 IL 51 51 5 51 6 1 1 26 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 17 c g - - MP 53 52 6 57 4 2 2 25 46 -2.912 -7.990 -0.272 -4.833 -3.345 -3.250 -3.421 0.608 -2.759 -4.225 2.922 -3.314 -3.405 1.084 -3.921 -1.223 1.159 -1.964 -0.151 -2.327 ML 54 52 6 57 4 1 1 23 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 22 44 -5.099 -4.128 -1.996 -0.593 0.813 -0.698 -0.421 -0.185 D 56 52 6 57 4 0 0 21 42 -5.876 -5.557 -0.556 -1.828 IL 57 57 5 57 4 1 1 25 47 -1.615 -1.298 -1.982 -6.183 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 23 45 -1.227 -0.885 -5.002 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - u - - - ML 59 58 6 61 3 1 1 15 34 -8.903 -0.011 -7.557 0.014 -0.318 0.046 0.209 D 60 58 6 61 3 0 0 15 34 -6.967 -1.335 -0.747 IL 61 61 3 61 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - u - - - ML 62 61 3 64 3 1 1 14 33 -8.933 -0.038 -5.377 0.205 -0.130 -1.027 0.529 D 63 61 3 64 3 0 0 14 33 -6.614 -2.127 -0.394 IL 64 64 3 64 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - A - - - ML 65 64 3 67 3 1 1 12 31 -8.905 -0.097 -3.993 1.064 -0.790 -1.266 -0.128 D 66 64 3 67 3 0 0 13 31 -6.938 -2.451 -0.306 IL 67 67 3 67 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - u - - - ML 68 67 3 70 2 1 1 1 1 * 0.000 0.264 -0.402 -0.500 0.417 D 69 67 3 70 2 0 0 0 0 * 0.000 IL 70 70 3 70 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 71 70 3 -1 0 0 0 0 0 [ BEGR 18 ] - - - - - - S 72 9 1 73 3 0 1 67 102 -1.716 -0.534 -7.615 IL 73 73 2 73 3 1 2 69 104 -1.104 -0.944 -6.069 0.000 0.000 0.000 0.000 [ MATL 19 ] 27 - A - - - ML 74 73 2 76 3 1 2 66 101 -8.961 -0.010 -7.615 1.866 -3.592 -2.523 -3.339 D 75 73 2 76 3 0 0 64 99 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 67 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 28 - C - - - ML 77 76 3 79 3 1 2 65 100 -8.961 -0.010 -7.615 -3.936 1.915 -4.634 -3.017 D 78 76 3 79 3 0 0 63 98 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 66 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 29 - U - - - ML 80 79 3 82 3 1 2 64 99 -8.961 -0.010 -7.615 -3.321 -3.034 -4.106 1.895 D 81 79 3 82 3 0 0 62 97 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 65 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - C - - - ML 83 82 3 85 3 1 1 63 98 -8.961 -0.010 -7.615 -3.936 1.915 -4.634 -3.017 D 84 82 3 85 3 0 0 61 96 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 64 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 31 - C - - - ML 86 85 3 88 3 1 1 62 97 -8.961 -0.010 -7.615 -3.936 1.915 -4.634 -3.017 D 87 85 3 88 3 0 0 60 95 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 63 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 32 - U - - - ML 89 88 3 91 3 1 1 61 96 -8.961 -0.010 -7.615 -3.321 -3.034 -4.106 1.895 D 90 88 3 91 3 0 0 59 94 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 62 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - C - - - ML 92 91 3 94 3 1 1 60 95 -8.961 -0.010 -7.615 -3.936 1.915 -4.634 -3.017 D 93 91 3 94 3 0 0 58 93 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 61 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - A - - - ML 95 94 3 97 3 1 1 59 94 -8.961 -0.010 -7.615 1.930 -4.280 -3.757 -3.992 D 96 94 3 97 3 0 0 57 92 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 60 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - C - - - ML 98 97 3 100 3 1 1 58 93 -8.961 -0.010 -7.615 -3.936 1.915 -4.634 -3.017 D 99 97 3 100 3 0 0 56 91 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 59 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - A - - - ML 101 100 3 103 3 1 1 57 92 -8.961 -0.010 -7.615 1.930 -4.280 -3.757 -3.992 D 102 100 3 103 3 0 0 55 90 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 58 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - C - - - ML 104 103 3 106 3 1 1 56 91 -8.961 -0.033 -5.618 -3.936 1.915 -4.634 -3.017 D 105 103 3 106 3 0 0 54 89 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 57 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - C - - - ML 107 106 3 109 3 1 1 55 90 -8.939 -0.010 -7.593 -0.340 1.255 -2.295 -0.692 D 108 106 3 109 3 0 0 53 88 -6.532 -1.114 -0.924 IL 109 109 3 109 3 1 1 56 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - a - - - ML 110 109 3 112 3 1 1 54 89 -8.961 -0.010 -7.615 0.898 0.292 -1.768 -0.693 D 111 109 3 112 3 0 0 52 87 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 55 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - C - - - ML 113 112 3 115 3 1 1 53 88 -8.961 -0.010 -7.615 -0.764 1.060 -2.168 0.143 D 114 112 3 115 3 0 0 51 86 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 54 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - A - - - ML 116 115 3 118 3 1 1 52 87 -8.961 -0.044 -5.164 1.012 0.154 -1.441 -0.994 D 117 115 3 118 3 0 0 50 85 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 53 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - c - - - ML 119 118 3 121 3 1 1 51 86 -8.928 -0.318 -2.352 0.178 0.799 -1.798 -0.249 D 120 118 3 121 3 0 0 49 84 -6.680 -2.193 -0.374 IL 121 121 3 121 3 1 1 52 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - u - - - ML 122 121 3 124 3 1 1 50 85 -8.623 -0.191 -3.041 0.153 -0.343 -1.048 0.692 D 123 121 3 124 3 0 0 48 83 -8.455 -3.968 -0.100 IL 124 124 3 124 3 1 1 51 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - c - - - ML 125 124 3 127 5 1 1 49 84 -7.522 -0.159 -3.465 -7.550 -8.441 -0.614 0.800 -1.684 0.372 D 126 124 3 127 5 0 0 48 83 -7.001 -0.337 -6.262 -3.501 -3.334 IL 127 127 3 127 5 1 1 50 84 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 45 70 c g - - MP 128 127 3 132 6 2 2 49 83 -9.510 -9.449 -0.016 -8.226 -8.505 -8.900 -2.513 -2.293 -2.731 0.643 -2.463 -3.398 2.315 0.152 -2.657 0.742 -3.121 1.062 1.057 -2.829 -0.406 -0.906 ML 129 127 3 132 6 1 1 47 82 -7.025 -7.371 -0.619 -1.780 -7.221 -4.751 -0.319 0.809 -1.045 -0.056 MR 130 127 3 132 6 1 1 47 81 -7.227 -5.956 -1.226 -5.934 -1.068 -4.148 0.797 -0.685 -0.406 -0.174 D 131 127 3 132 6 0 0 45 79 -9.439 -8.138 -1.725 -4.617 -4.634 -0.710 IL 132 132 5 132 6 1 1 48 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 48 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 46 69 G C - - MP 134 133 6 138 6 2 2 47 81 -9.602 -9.541 -0.015 -8.318 -8.598 -8.993 -5.809 -3.741 -6.014 -0.582 -7.055 -5.313 -2.037 -6.408 -5.127 3.753 -5.414 0.112 -2.309 -5.254 -4.134 -4.883 ML 135 133 6 138 6 1 1 45 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 45 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 41 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 46 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 46 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 47 68 C G - - MP 140 139 6 144 6 2 2 45 79 -9.602 -9.541 -0.015 -8.318 -8.598 -8.993 -6.724 -6.814 -6.001 -3.002 -4.410 -6.128 3.897 -5.473 -6.230 -2.943 -6.142 -4.911 -1.234 -6.650 -2.282 -5.033 ML 141 139 6 144 6 1 1 43 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 42 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 39 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 44 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 44 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 48 67 C G - - MP 146 145 6 150 6 2 2 43 77 -9.602 -9.541 -0.015 -8.318 -8.598 -8.993 -5.466 -5.540 -4.997 -1.646 -3.488 -5.286 3.637 -4.353 -5.049 -1.515 -5.263 -3.572 0.406 -5.424 0.131 -3.845 ML 147 145 6 150 6 1 1 41 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 40 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 37 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 42 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 42 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 49 66 C G - - MP 152 151 6 156 6 2 2 41 75 -9.602 -9.541 -0.015 -8.318 -8.598 -8.993 -5.500 -5.597 -5.003 -1.724 -3.476 -5.273 3.614 -4.345 -5.061 -1.608 -5.265 -3.669 -0.033 -5.443 0.749 -3.859 ML 153 151 6 156 6 1 1 39 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 38 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 35 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 40 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 40 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 50 65 G C - - MP 158 157 6 162 6 2 2 39 73 -9.602 -9.541 -0.015 -8.318 -8.598 -8.993 -5.804 -3.739 -6.008 -0.579 -7.050 -5.313 -2.033 -6.402 -5.125 3.752 -5.413 0.123 -2.304 -5.251 -4.129 -4.876 ML 159 157 6 162 6 1 1 36 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 36 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 33 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 38 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 38 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 51 64 a u - - MP 164 163 6 168 4 2 2 37 71 -1.868 -5.496 -0.528 -6.620 -4.435 -3.184 -4.493 2.592 -5.727 -5.894 -1.149 -4.766 -4.381 2.009 -4.907 2.166 -1.332 -4.930 -3.077 -3.273 ML 165 163 6 168 4 1 1 34 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 33 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 32 67 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 37 72 -1.902 -0.697 -3.216 -6.954 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 36 70 -0.765 -1.324 -6.366 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - c - - - ML 170 169 6 172 3 1 1 17 35 -8.961 -0.010 -7.615 -0.554 0.800 -1.109 0.156 D 171 169 6 172 3 0 0 17 35 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - u - - - ML 173 172 3 175 3 1 1 15 34 -8.961 -0.010 -7.615 -0.305 -0.724 0.257 0.475 D 174 172 3 175 3 0 0 16 34 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - u - - - ML 176 175 3 178 3 1 1 14 33 -8.961 -0.084 -4.190 0.154 0.272 -1.253 0.334 D 177 175 3 178 3 0 0 14 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - g - - - ML 179 178 3 181 3 1 1 12 31 -8.887 -0.267 -2.584 0.074 -0.848 0.424 0.070 D 180 178 3 181 3 0 0 13 31 -7.113 -2.626 -0.267 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - u - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -0.033 -0.304 -1.437 0.882 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Yfr1 ACC RF01116 DESC Cyanobacterial functional RNA 1 LENG 59 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Feb 28 01:25:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 37 EFFN 10.230103 CKSUM 2280054883 STATS LOCAL MSV -7.8337 0.71952 STATS LOCAL VITERBI -8.6633 0.71952 STATS LOCAL FORWARD -3.5873 0.71952 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67029 1.04888 1.45536 1.47770 1.38629 1.38629 1.38629 1.38629 0.11935 4.90899 2.25263 1.46634 0.26236 0.00000 * 1 1.43960 3.59052 0.35470 3.38101 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.01649 4.80613 4.80613 1.46634 0.26236 2.78775 0.06354 2 3.86646 0.94957 3.68458 0.56730 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.01649 4.80613 4.80613 1.46634 0.26236 0.13138 2.09460 3 3.82082 4.87295 0.03806 4.85583 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.09129 4.90899 2.52735 1.46634 0.26236 1.09861 0.40547 4 1.75258 1.43246 1.01175 1.49446 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.01604 4.83374 4.83374 1.46634 0.26236 0.16957 1.85806 5 1.08566 3.50662 0.51731 3.31857 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 6 2.16899 3.44677 0.19426 3.49285 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.09565 4.90899 2.47882 1.46634 0.26236 1.09861 0.40547 7 1.11463 2.29921 0.68240 2.71473 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.09924 4.82944 2.44781 1.46634 0.26236 2.59233 0.07779 8 2.39312 0.55243 1.93627 1.66672 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.20044 1.91236 3.38439 0.47619 0.97061 0.24670 1.52038 9 1.42733 1.59933 1.29687 1.25655 11 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01556 4.86387 4.86387 1.46634 0.26236 0.79145 0.60365 10 1.23938 1.46284 2.21309 0.99561 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03677 4.88729 3.55588 1.46634 0.26236 1.77649 0.18540 11 0.56699 2.02076 2.47128 1.53369 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08295 4.86605 2.63248 1.46634 0.26236 2.16280 0.12217 12 1.19888 1.69032 1.74536 1.08050 14 u - - _ 1.38629 1.38629 1.38629 1.38629 0.30978 2.14334 1.90296 0.74247 0.64614 0.12494 2.14174 13 2.02413 1.94250 0.48786 2.20178 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.01704 4.77396 4.77396 1.46634 0.26236 0.61982 0.77228 14 2.82597 0.80563 2.18862 0.96268 18 c - - > 1.38629 1.38629 1.38629 1.38629 0.05695 4.85367 3.04578 1.46634 0.26236 0.21607 1.63825 15 3.86459 0.74264 3.70762 0.73681 19 u - - > 1.38629 1.38629 1.38629 1.38629 0.01546 4.87064 4.87064 1.46634 0.26236 0.28367 1.39842 16 3.51713 0.61408 3.29017 0.93667 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.09129 4.90899 2.52735 1.46634 0.26236 1.09861 0.40547 17 1.44781 1.12901 1.46214 1.56149 21 c - - > 1.38629 1.38629 1.38629 1.38629 0.01604 4.83374 4.83374 1.46634 0.26236 0.16957 1.85806 18 4.46537 0.05783 4.48967 3.39728 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 19 0.62819 3.15902 0.95748 3.21601 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 20 3.25737 0.90106 3.23430 0.66168 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.43205 1.06873 4.90899 0.70821 0.67831 1.09861 0.40547 21 0.05919 4.46917 3.41238 4.33908 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 22 4.77692 0.03055 5.15231 4.14255 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 23 4.41634 4.14722 4.97444 0.03542 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 24 4.77692 0.03055 5.15231 4.14255 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 25 4.77692 0.03055 5.15231 4.14255 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 26 4.41634 4.14722 4.97444 0.03542 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 27 4.77692 0.03055 5.15231 4.14255 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 28 0.02324 5.08620 4.69520 4.87325 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 29 4.77692 0.03055 5.15231 4.14255 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 30 0.02324 5.08620 4.69520 4.87325 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 31 4.77692 0.03055 5.15231 4.14255 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03223 4.90899 3.71583 1.46634 0.26236 1.09861 0.40547 32 1.67597 0.41004 3.50455 2.12703 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.01513 4.89189 4.89189 1.46634 0.26236 0.47407 0.97408 33 0.68397 1.09538 3.07189 2.16589 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 34 2.08290 0.55208 3.36599 1.32744 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 35 0.59464 1.19652 2.67674 2.56127 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04091 4.90899 3.42034 1.46634 0.26236 1.09861 0.40547 36 1.26532 0.71698 3.05626 1.70065 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.25822 4.88334 1.51413 1.46634 0.26236 1.86114 0.16900 37 1.27470 1.64954 2.23070 0.86537 43 u - - - 1.38629 1.38629 1.38629 1.38629 0.16365 4.64454 1.95655 1.46634 0.26236 3.54058 0.02943 38 2.02069 0.70165 2.93633 1.14379 44 c - - - 1.38629 1.38629 1.38629 1.38629 0.02239 4.50329 4.50329 1.46634 0.26236 0.18756 1.76596 39 2.53606 0.66015 1.40890 1.83486 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.01559 4.86183 4.86183 1.46634 0.26236 0.24388 1.53055 40 3.42784 4.39513 0.06099 4.24259 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 41 4.77494 0.03844 4.87672 3.83275 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 42 4.16122 0.17969 4.08374 2.02469 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 43 4.25654 0.19392 4.18294 1.91833 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 44 3.55031 4.60368 0.05111 4.50116 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 45 0.86196 4.19596 0.61192 3.89712 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.36248 1.21512 4.90899 0.32673 1.27754 1.09861 0.40547 46 1.93839 0.72392 2.25184 1.32421 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 47 1.72643 1.96941 1.12585 1.02675 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 48 1.28364 1.13077 2.43644 1.16245 56 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07254 4.90899 2.77107 1.46634 0.26236 1.09861 0.40547 49 1.37037 2.07283 1.01117 1.36115 57 g - - _ 1.38629 1.38629 1.38629 1.38629 0.21816 4.85219 1.67029 1.46634 0.26236 0.21172 1.65649 50 1.43596 1.61409 2.64317 0.70947 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.49556 0.96267 4.72215 0.98991 0.46459 0.07975 2.56850 51 4.07450 1.50941 3.97103 0.29692 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 52 4.58773 0.12743 4.46432 2.32321 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 53 3.16327 4.31903 0.07595 4.04329 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 54 2.67480 4.22867 0.10810 3.96473 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 55 4.04905 5.05990 0.03272 4.77905 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 56 4.36360 0.13312 4.32762 2.31558 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.11892 4.90899 2.25628 1.46634 0.26236 1.09861 0.40547 57 2.17946 2.58116 0.87682 0.92859 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.44158 1.05324 4.80656 0.04624 3.09698 0.13184 2.09139 58 3.64992 2.70557 4.16118 0.11475 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01487 4.90899 4.90899 1.46634 0.26236 1.09861 0.40547 59 4.41634 4.14722 4.97444 0.03542 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.11151 2.24887 * 0.13541 2.06638 0.00000 * //