# STOCKHOLM 1.0
#=GF ID SBWMV2_UPD-PKl
#=GF AC RF01105
#=GF DE Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 39.0
#=GF NC 35.7
#=GF TC 45.4
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.50 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00204;
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 1904973; positive regulation of viral translation;
#=GF DR GO; 0046782; regulation of viral transcription;
#=GF RN [1]
#=GF RM 10603167
#=GF RT Molecular characterization of a new furovirus mainly infecting rye.
#=GF RA Koenig R, Pleij CW, Huth W
#=GF RL Arch Virol. 1999;144:2125-2140.
#=GF WK UPSK_RNA
#=GF SQ 2

X81639.1/3336-3362 AGAGUUAUCAUACUCUAUAAACUAUGA
L07938.1/3336-3362 AGAGUUAUCAUACUCUAUAAACUAUGA
#=GC SS_cons       <<<<___AAAAA>>>>::::::aaaaa
#=GC RF            AGAGUUAUCAUACUCUAUAAACUAUGA
//
