# STOCKHOLM 1.0
#=GF ID RF_site8
#=GF AC RF01097
#=GF DE Gag/pro ribosomal frameshift site
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 43.0
#=GF NC 42.9
#=GF TC 43.0
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.81 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00107;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF RN [1]
#=GF RM 2402881
#=GF RT RNA pseudoknots: translational frameshifting and readthrough on viral
#=GF RT RNAs.
#=GF RA ten Dam EB, Pleij CW, Bosch L
#=GF RL Virus Genes. 1990;4:121-136.
#=GF RN [2]
#=GF RM 7585244
#=GF RT Analysis of the role of the pseudoknot component in the SRV-1 gag-pro
#=GF RT ribosomal frameshift signal: loop lengths and stability of the stem
#=GF RT regions.
#=GF RA ten Dam EB, Verlaan PW, Pleij CW
#=GF RL RNA. 1995;1:146-154.
#=GF RN [3]
#=GF RM 9237911
#=GF RT Base-pairings within the RNA pseudoknot associated with the simian
#=GF RT retrovirus-1 gag-pro frameshift site.
#=GF RA Du Z, Holland JA, Hansen MR, Giedroc DP, Hoffman DW
#=GF RL J Mol Biol. 1997;270:464-470.
#=GF RN [4]
#=GF RM 9490779
#=GF RT Mutational analysis of the RNA pseudoknot involved in efficient ribosomal
#=GF RT frameshifting in simian retrovirus-1.
#=GF RA Sung D, Kang H
#=GF RL Nucleic Acids Res. 1998;26:1369-1372.
#=GF WK Ribosomal_frameshift
#=GF SQ 4

AB181392.1/1897-1948 GGGAAACGGACUGAGGGGCCAGCCCCAGGCCCCGAAACAAGCUUAUGGGGCG
AF252389.1/572-623   GGGAAACGGGUGGAGGGGCCAGCCCCAGGCCCCGAAACAAGCUUAUGGGGCG
U85505.1/2460-2511   GGGAAACGGGAUGAGGGGCCAGCCCCAGGCCCCGAAACAAGCAUAUGGGGCA
M80216.1/1954-2005   GGGAAACUGGGUGAGGGGCCAGCCCCUGGCCCCGAAACAAUGUUAUGGGGCA
#=GC SS_cons         ::::::::::::::<<<<<<_AAAAAA>>>>>>::::::::::::aaaaaa:
#=GC RF              GGGAAACGGGuUGAGGGGCCAGCCCCAGGCCCCGAAACAAGcUUAUGGGGCa
//
