# STOCKHOLM 1.0
#=GF ID RF_site6
#=GF AC RF01094
#=GF DE Polymerase ribosomal frameshift site
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 90.0
#=GF NC 41.1
#=GF TC 154.0
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 33.68 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00128;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF RN [1]
#=GF RM 2388833
#=GF RT The carboxyl-terminal part of the putative Berne virus polymerase is
#=GF RT expressed by ribosomal frameshifting and contains sequence motifs which
#=GF RT indicate that toro- and coronaviruses are evolutionarily related.
#=GF RA Snijder EJ, den Boon JA, Bredenbeek PJ, Horzinek MC, Rijnbrand R, Spaan WJ
#=GF RL Nucleic Acids Res. 1990;18:4535-4542.
#=GF WK Ribosomal_frameshift
#=GF SQ 2

X52374.1/1045-1162     UUUAAACUGUUGAGAGGUGCCUGGAGCGCCUGCAGGCAUCUCUGUUUUCAAAAUGGCGCAUACCAGUCUUCAAGGUCAAAACAUUAUAUUGAUUUGGCAACUGAGUAUAAUGCAGGCA
AY427798.1/14184-14301 UUUAAACUGCUGAGAGAUGUCUGGUGCGCCUGCAGACAUCUCUGUUUUCAAAAUGGCGCGUAUCAGUCGUCACGAUCUAAGCAUUAUAUUGAUUUGGCGACUGAGUACAACGCAGGCA
#=GC SS_cons           ::::::::::::<<<<<<<<<<<____AAAAA>>>>>>>>>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::aaaaa:
#=GC RF                UUUAAACUGuUGaGaGauGcCuGGuGCGCCUGCaGgCauCuCuGUUUUCAAAAUGGCGCaUAuCAGUCuUCAaGaUCuAAaCAUUAUAUUGAUUUGGCaACUGAGUAuAAuGCAGGCA
//
