INFERNAL1/a [1.1.5 | Sep 2023] NAME RF_site5 ACC RF01093 DESC Ma3 gene ribosomal frameshift signal STATES 184 NODES 51 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01093/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 3.401367 CKSUM 3085073561 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -11.6919 0.71913 ECMLC 0.54073 -11.00137 1.35475 1600000 956891 0.001254 ECMGC 0.40235 -20.77765 -4.74644 1600000 253129 0.001580 ECMLI 0.51187 -9.73219 2.70494 1600000 698201 0.001719 ECMGI 0.40562 -17.16144 -2.29924 1600000 166021 0.002409 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -7.452 -7.659 -0.037 -6.073 IL 1 1 2 1 4 1 13 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 13 75 94 -8.437 -0.015 -7.092 -2.542 -3.886 1.870 -3.262 D 4 2 3 5 3 0 7 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 12 74 93 -8.437 -0.015 -7.092 -2.542 -3.886 1.870 -3.262 D 7 5 3 8 3 0 6 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 12 73 92 -8.437 -0.015 -7.092 -2.542 -3.886 1.870 -3.262 D 10 8 3 11 3 0 5 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 10 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 11 72 91 -8.437 -0.015 -7.092 1.862 -3.323 -2.865 -2.963 D 13 11 3 14 3 0 4 70 90 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 70 90 -8.437 -0.015 -7.092 1.862 -3.323 -2.865 -2.963 D 16 14 3 17 3 0 4 69 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 9 69 88 -8.437 -0.015 -7.092 1.862 -3.323 -2.865 -2.963 D 19 17 3 20 3 0 3 68 87 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 8 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 9 68 87 -8.437 -0.015 -7.092 -0.992 1.502 -2.427 -1.065 D 22 20 3 23 3 0 2 67 86 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 8 67 86 -8.437 -0.015 -7.092 -1.086 -2.873 1.674 -2.318 D 25 23 3 26 3 0 1 66 85 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 6 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - g - - - ML 27 26 3 29 3 1 7 66 85 -8.437 -0.015 -7.092 0.632 -1.907 0.839 -1.342 D 28 26 3 29 3 0 1 65 84 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 6 65 84 -8.437 -0.015 -7.092 -1.402 -1.778 1.611 -1.866 D 31 29 3 32 3 0 0 64 83 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 6 64 83 -8.437 -0.015 -7.092 0.821 -0.970 0.177 -0.756 D 34 32 3 35 3 0 0 63 82 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - a - - - ML 36 35 3 38 3 1 5 63 82 -8.437 -0.015 -7.092 0.358 -0.722 -0.017 0.168 D 37 35 3 38 3 0 0 62 81 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 4 62 81 -8.801 -0.014 -7.119 -0.049 0.273 -0.206 -0.062 D 40 38 3 41 3 0 0 61 80 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 2 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 60 - a - - MR 42 41 3 44 3 1 4 61 80 -8.801 -0.014 -7.119 0.755 -0.720 -0.483 -0.016 D 43 41 3 44 3 0 0 59 78 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 59 - C - - MR 45 44 3 47 3 1 3 60 79 -8.801 -0.014 -7.119 -2.887 1.829 -3.699 -2.085 D 46 44 3 47 3 0 0 58 77 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 58 - U - - MR 48 47 3 50 3 1 3 59 78 -8.801 -0.014 -7.119 -2.387 -2.232 -3.153 1.801 D 49 47 3 50 3 0 0 57 76 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 57 - C - - MR 51 50 3 53 3 1 2 58 77 -8.801 -0.014 -7.119 -2.887 1.829 -3.699 -2.085 D 52 50 3 53 3 0 0 56 75 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 56 - G - - MR 54 53 3 56 3 1 2 57 76 -8.801 -0.014 -7.119 -2.542 -3.886 1.870 -3.262 D 55 53 3 56 3 0 0 55 74 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 55 - G - - MR 57 56 3 59 3 1 2 56 75 -8.801 -0.014 -7.119 -2.542 -3.886 1.870 -3.262 D 58 56 3 59 3 0 0 54 73 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 54 - A - - MR 60 59 3 62 3 1 1 55 74 -8.801 -0.014 -7.119 1.862 -3.323 -2.865 -2.963 D 61 59 3 62 3 0 0 53 72 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - U - - MR 63 62 3 65 3 1 1 54 73 -8.801 -0.014 -7.119 -0.835 -0.372 -1.127 1.143 D 64 62 3 65 3 0 0 52 71 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - A - - MR 66 65 3 68 3 1 1 53 72 -8.801 -0.014 -7.119 1.041 -1.862 0.338 -1.313 D 67 65 3 68 3 0 0 51 70 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - a - - MR 69 68 3 71 3 1 1 52 71 -8.801 -0.014 -7.119 0.477 -0.068 -0.466 -0.105 D 70 68 3 71 3 0 0 50 69 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 50 - a - - MR 72 71 3 74 3 1 1 51 70 -8.801 -0.014 -7.119 0.916 -1.859 0.518 -1.301 D 73 71 3 74 3 0 0 49 68 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 49 - a - - MR 75 74 3 77 3 1 1 50 69 -8.801 -0.014 -7.119 0.482 0.367 -1.325 -0.129 D 76 74 3 77 3 0 0 48 67 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 48 - c - - MR 78 77 3 80 3 1 1 49 68 -8.801 -0.014 -7.119 0.322 0.499 -0.780 -0.407 D 79 77 3 80 3 0 0 47 66 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 47 - G - - MR 81 80 3 83 3 1 1 48 67 -8.801 -0.014 -7.119 -0.533 -1.317 1.315 -1.253 D 82 80 3 83 3 0 0 46 65 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 46 - G - - MR 84 83 3 86 3 1 1 47 66 -8.801 -0.014 -7.119 0.147 -2.100 1.212 -1.541 D 85 83 3 86 3 0 0 45 64 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 45 - A - - MR 87 86 3 89 5 1 1 46 65 -7.514 -0.029 -7.330 -7.542 -8.434 1.180 -0.947 -0.577 -0.876 D 88 86 3 89 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 14 44 u a - - MP 90 89 3 94 6 2 2 45 64 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -2.350 -2.385 -2.503 1.146 0.123 -3.341 1.515 -2.704 -2.549 1.074 -3.097 1.115 1.656 -2.644 -0.262 -1.635 ML 91 89 3 94 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 15 43 G C - - MP 96 95 6 100 6 2 2 43 62 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -5.013 -3.252 -5.100 0.056 -6.017 -4.929 -1.170 -5.510 -4.614 3.653 -4.933 0.078 -1.449 -4.668 -3.218 -3.982 ML 97 95 6 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 16 42 G C - - MP 102 101 6 106 6 2 2 41 60 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -5.655 -3.541 -5.903 -0.443 -6.500 -5.032 -1.638 -6.166 -4.874 3.797 -5.157 -1.290 -2.004 -5.051 -3.735 -4.767 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 17 41 G C - - MP 108 107 6 112 6 2 2 39 58 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -4.442 -2.973 -4.462 0.503 -5.424 -4.899 -0.694 -4.860 -4.295 3.338 -4.675 1.399 -0.954 -4.373 -2.694 -3.330 ML 109 107 6 112 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 18 40 C G - - MP 114 113 6 118 6 2 2 37 56 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -5.605 -5.599 -5.105 -1.771 -3.633 -5.376 3.779 -4.550 -5.211 -1.641 -5.336 -3.584 -0.252 -5.600 -1.386 -4.023 ML 115 113 6 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 19 39 U A - - MP 120 119 6 124 6 2 2 35 54 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -4.671 -4.657 -4.457 -0.896 -3.253 -4.943 1.090 -4.016 -4.474 -0.722 -4.819 -2.665 3.441 -4.768 0.220 -3.261 ML 121 119 6 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 20 38 u a - - MP 126 125 6 130 6 2 2 33 52 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -1.922 -2.089 -2.102 0.918 -1.978 -2.938 1.476 -2.378 0.443 0.843 -1.254 -0.658 1.972 -2.247 0.355 -1.320 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 21 37 G C - - MP 132 131 6 136 6 2 2 31 50 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -5.655 -3.541 -5.903 -0.443 -6.500 -5.032 -1.638 -6.166 -4.874 3.797 -5.157 -1.290 -2.004 -5.051 -3.735 -4.767 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 22 36 G C - - MP 138 137 6 142 6 2 2 29 48 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -4.900 -0.803 -4.953 0.109 -5.805 -4.810 -1.019 -5.421 -4.574 3.640 -4.874 -0.911 -1.299 -4.513 -3.045 -3.879 ML 139 137 6 142 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 23 35 G C - - MP 144 143 6 148 6 2 2 27 46 -9.321 -9.260 -0.018 -8.037 -8.317 -8.712 -5.655 -3.541 -5.903 -0.443 -6.500 -5.032 -1.638 -6.166 -4.874 3.797 -5.157 -1.290 -2.004 -5.051 -3.735 -4.767 ML 145 143 6 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 34 a u - - MP 150 149 6 154 4 2 2 25 44 -7.452 -7.659 -0.037 -6.073 -1.601 -0.851 -1.798 1.722 -0.958 -0.759 1.367 -0.695 -1.862 0.964 -2.430 -0.452 1.245 -1.936 -0.041 -1.062 ML 151 149 6 154 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 25 - c - - - ML 156 155 6 158 3 1 1 22 41 -8.437 -0.015 -7.092 -0.081 0.707 -0.951 -0.145 D 157 155 6 158 3 0 0 21 40 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 26 - A - - - ML 159 158 3 161 3 1 1 21 39 -8.437 -0.015 -7.092 1.257 -1.920 -0.049 -1.402 D 160 158 3 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 27 - u - - - ML 162 161 3 164 3 1 1 20 38 -8.437 -0.015 -7.092 0.338 -0.621 -1.245 0.734 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 28 - G - - - ML 165 164 3 167 3 1 1 18 37 -8.437 -0.015 -7.092 -2.542 -3.886 1.870 -3.262 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 29 - A - - - ML 168 167 3 170 3 1 1 17 36 -8.437 -0.015 -7.092 1.862 -3.323 -2.865 -2.963 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 30 - G - - - ML 171 170 3 173 3 1 1 16 34 -8.437 -0.015 -7.092 -2.542 -3.886 1.870 -3.262 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 31 - C - - - ML 174 173 3 176 3 1 1 14 33 -8.437 -0.015 -7.092 -2.887 1.829 -3.699 -2.085 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 32 - C - - - ML 177 176 3 179 3 1 1 13 31 -8.437 -0.015 -7.092 -2.887 1.829 -3.699 -2.085 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 33 - A - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 1.862 -3.323 -2.865 -2.963 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RF_site5 ACC RF01093 DESC Ma3 gene ribosomal frameshift signal LENG 60 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01093/CM NSEQ 12 EFFN 4.321289 CKSUM 3085073561 STATS LOCAL MSV -7.8313 0.71913 STATS LOCAL VITERBI -8.4870 0.71913 STATS LOCAL FORWARD -3.5524 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36495 1.37591 1.05978 1.92782 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 0.00000 * 1 3.43490 4.39446 0.06601 3.94727 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 2 3.43490 4.39446 0.06601 3.94727 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 3 3.43490 4.39446 0.06601 3.94727 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 4 0.06957 3.99592 3.65493 3.77456 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 5 0.06957 3.99592 3.65493 3.77456 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 6 0.06957 3.99592 3.65493 3.77456 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 7 2.19466 0.28162 3.32360 2.32259 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 8 2.24436 3.60119 0.18986 3.22798 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 9 0.92518 2.90104 0.75837 2.52392 9 g - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 10 2.56166 2.69208 0.22244 2.90918 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 11 0.78748 2.10445 1.23402 2.02514 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 12 1.13313 1.91933 1.38059 1.27353 12 a - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 13 1.44824 1.15726 1.51521 1.46573 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 14 1.77804 1.33815 1.22859 1.28738 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 15 2.74141 3.64250 0.12824 3.51690 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 16 3.09058 3.97637 0.08778 3.92166 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 17 2.41175 3.31359 0.18475 3.15479 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 18 4.00468 0.10720 3.86932 2.77173 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 19 3.42994 2.12338 3.24095 0.21213 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 20 1.89126 1.62087 1.30320 0.96830 20 u - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 21 3.08571 3.96903 0.08839 3.91173 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 22 2.30947 3.56717 0.17371 3.44488 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 23 3.08468 3.96747 0.08852 3.90963 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 24 1.23200 1.29313 1.66988 1.40400 24 a - - < 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 25 1.47022 0.84245 2.08816 1.53455 25 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 26 0.47206 2.91992 1.39978 2.58105 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 27 1.13917 1.85373 2.32485 0.85457 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 28 3.43490 4.39446 0.06601 3.94727 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 29 0.06957 3.99592 3.65493 3.77456 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 30 3.43490 4.39446 0.06601 3.94727 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 31 3.73699 0.08491 4.27129 3.13244 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 32 3.73699 0.08491 4.27129 3.13244 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 33 0.06957 3.99592 3.65493 3.77456 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 34 1.53997 1.55076 1.42100 1.10246 34 u - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 35 4.05697 0.10728 3.82220 2.77185 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 36 3.64529 0.15979 3.39845 2.42881 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 37 4.06083 0.10711 3.82417 2.77256 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 38 0.92509 2.00164 1.23802 1.72355 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 39 0.30018 3.40512 1.68782 3.18960 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 40 3.05322 4.03268 0.09177 3.78328 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 41 3.38034 0.41643 3.12843 1.33644 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 42 4.08548 0.10603 3.83666 2.77706 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 43 3.72746 0.19865 3.47958 2.07715 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 44 1.19741 1.92253 1.45805 1.14226 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 45 0.52325 2.08291 1.81095 2.12574 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 46 1.29423 3.03186 0.49802 2.66020 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 47 1.84361 2.35473 0.41857 2.42086 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 48 1.15843 0.99089 1.95983 1.74930 48 c - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 49 1.03671 1.08796 2.40689 1.52150 49 a - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 50 0.71466 2.87331 0.98836 2.50173 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 51 1.04444 1.41152 1.71726 1.49263 51 a - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 52 0.62403 2.87776 1.11779 2.51384 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 53 2.08766 1.66016 2.22021 0.54934 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 54 0.06957 3.99592 3.65493 3.77456 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 55 3.43490 4.39446 0.06601 3.94727 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 56 3.43490 4.39446 0.06601 3.94727 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 57 3.73699 0.08491 4.27129 3.13244 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 58 3.33931 3.18667 3.87727 0.10256 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 59 3.73699 0.08491 4.27129 3.13244 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02805 4.28086 4.28086 1.46634 0.26236 1.09861 0.40547 60 0.83826 1.91519 1.73279 1.41290 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.01412 4.26693 * 1.46634 0.26236 0.00000 * //