# STOCKHOLM 1.0
#=GF ID RF_site5
#=GF AC RF01093
#=GF DE Ma3 gene ribosomal frameshift signal
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 35.0
#=GF NC 34.9
#=GF TC 35.0
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.25 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00258;
#=GF DR GO; 0006452; translational frameshifting;
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF RN [1]
#=GF RM 16407312
#=GF RT A functional -1 ribosomal frameshift signal in the human paraneoplastic
#=GF RT Ma3 gene.
#=GF RA Wills NM, Moore B, Hammer A, Gesteland RF, Atkins JF
#=GF RL J Biol Chem. 2006;281:7082-7088.
#=GF WK Ribosomal_frameshift
#=GF SQ 12

AAQQ01394808.1/251-310     GGGAAACGGGAGCCGGGCUUGGGACAAGAGCCAUCCCAAGUCCAAGGCCAAGUAGGCUCU
AY121806.1/1715-1774       GGGAAACGAGGCAGGGGCUGGGGCCAUGAGCCAUCCCAAGCCCUGGGAAACAUAGGCUCA
AAPY01451866.1/2180-2239   GGGAAACGAGAUAGGGGCUGGGGCCAUGAGCCACCCCAAGCCCUGGGAAGCAUAGGCUCA
ABDC01277479.1/317-258     GGGAAACGAGAUGGGGGCUGGGGCUAUGAGCCAUCCCGAGCCCUAAGAAGCAUAGGCUCA
AANN01419562.1/5008-4949   GGGAAACGAGCAGGGGGCUGGGGCAGUGAGCCAACCCAAGCCCUAGGAAGCAGAGGCUCG
AAIY01564318.1/499-558     GGGAAACGGGGUGGGGGCUGGGGCAGUGAGCCACCCCAGGCCUUAAGCAGUACAGGCUCA
AAWR02040610.1/2027-2086   GGGAAACGGGAGCUGGGCUUGGGACAAGAGCCAUCCCAAGCCCAAGGCCAAGUAGGCUCA
AAGV020672825.1/603-544    GGGAAACGGGAGCCGGGCUUGAGACGCGAGCCAUCCCAAGCCCAAGCCCAGGCAGGCUCA
AC216924.3/17795-17736     GGGAAACGGGAACUGGGCUUGGGACAAGAGCCAUCCCAAGUCCAAGGCCAAGUAGGCUCG
AL136329.1/63782-63841     GGGAAACAGGAGCUGGGCUUGGGAGAAGAGCCAUCCCAAGCCCAAGACCAAGUAGGCUCC
AAQR03179762.1/22803-22744 GGGAAAAGAGGAUAGGGCUUGGGACAUGAGCCACCCCGAGUCCUCAGGUGAAUAGGCUCU
AAPE02015504.1/48430-48489 GGGAAACGGCGACCGGGCUUGGGACAAGAGCCAUCCCAAGUCCAAGGCCAGAUAGGCUCA
#=GC SS_cons               :::::::::::::<<<<<<<<<<<___AAAAA_>>>>>>>>>>>::::::::::aaaaa:
#=GC RF                    GGGAAACGgGaacuGGGCUuGGGacAuGAGCCAuCCCaAGCCCaAGGcaaaAUAGGCUCa
//
