INFERNAL1/a [1.1.5 | Sep 2023] NAME RF_site4 ACC RF01090 DESC Edr gene ribosomal frameshift signal STATES 202 NODES 58 CLEN 66 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 23:04:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01090/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 1.985840 CKSUM 3551254120 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 77.00 NC 38.60 EFP7GF -9.5003 0.71897 ECMLC 0.53985 -10.18459 1.49366 1600000 656426 0.001828 ECMGC 0.42059 -18.21537 -4.71152 1600000 117133 0.003415 ECMLI 0.53606 -7.67806 3.22289 1600000 414025 0.002898 ECMGI 0.42220 -14.15961 -1.65605 1600000 78470 0.005097 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 106 -6.971 -7.178 -0.052 -5.592 IL 1 1 2 1 4 1 21 87 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 21 84 106 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 4 2 3 5 3 0 15 82 104 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 20 83 105 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 7 5 3 8 3 0 14 81 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 19 82 104 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 10 8 3 11 3 0 14 80 102 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 18 81 103 -7.986 -0.020 -6.640 1.728 -2.415 -2.042 -1.961 D 13 11 3 14 3 0 13 79 101 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 80 102 -7.986 -0.020 -6.640 1.371 -1.633 -0.664 -1.119 D 16 14 3 17 3 0 12 78 100 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 79 101 -7.986 -0.020 -6.640 1.728 -2.415 -2.042 -1.961 D 19 17 3 20 3 0 11 77 99 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 16 78 100 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 22 20 3 23 3 0 10 76 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 15 76 99 -7.986 -0.020 -6.640 -1.525 -1.515 -2.261 1.629 D 25 23 3 26 3 0 10 75 97 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 14 75 98 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 28 26 3 29 3 0 9 74 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 13 74 97 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 31 29 3 32 3 0 8 73 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 76 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 12 73 96 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 34 32 3 35 3 0 7 72 94 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 75 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 11 72 95 -8.375 -0.018 -6.692 -0.229 0.749 -1.315 0.090 D 37 35 3 38 3 0 7 71 93 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 10 73 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 69 - A - - MR 39 38 3 41 3 1 11 71 94 -8.375 -0.018 -6.692 1.268 -0.771 -1.264 -0.763 D 40 38 3 41 3 0 5 70 92 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 10 72 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 68 - C - - MR 42 41 3 44 3 1 10 70 93 -8.375 -0.018 -6.692 -0.417 1.146 -1.621 -0.488 D 43 41 3 44 3 0 4 69 91 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 9 71 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 67 - C - - MR 45 44 3 47 3 1 9 69 92 -8.375 -0.018 -6.692 -1.793 1.638 -2.619 -1.196 D 46 44 3 47 3 0 3 68 90 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 8 70 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 66 - C - - MR 48 47 3 50 3 1 8 68 91 -8.375 -0.018 -6.692 -1.793 1.638 -2.619 -1.196 D 49 47 3 50 3 0 2 67 89 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 7 69 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 65 - C - - MR 51 50 3 53 3 1 8 67 90 -8.375 -0.018 -6.692 -1.793 1.638 -2.619 -1.196 D 52 50 3 53 3 0 2 66 88 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 6 68 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 64 - U - - MR 54 53 3 56 3 1 7 66 89 -8.375 -0.018 -6.692 -1.525 -1.515 -2.261 1.629 D 55 53 3 56 3 0 1 65 87 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 67 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 63 - G - - MR 57 56 3 59 3 1 6 65 88 -8.375 -0.018 -6.692 -1.626 -2.854 1.734 -2.241 D 58 56 3 59 3 0 0 64 86 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 5 66 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - G - - MR 60 59 3 62 3 1 6 64 87 -8.375 -0.018 -6.692 -0.303 -1.900 1.332 -1.308 D 61 59 3 62 3 0 0 63 85 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 65 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - A - - MR 63 62 3 65 3 1 5 63 86 -8.375 -0.018 -6.692 1.340 -1.601 -0.585 -1.081 D 64 62 3 65 3 0 0 62 84 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 64 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - A - - MR 66 65 3 68 3 1 4 62 85 -8.375 -0.018 -6.692 1.373 -1.635 -0.669 -1.122 D 67 65 3 68 3 0 0 61 83 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 3 63 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 59 - u - - MR 69 68 3 71 3 1 4 61 84 -8.375 -0.018 -6.692 0.154 -0.855 -1.175 0.920 D 70 68 3 71 3 0 0 60 82 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 62 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - A - - MR 72 71 3 74 3 1 3 60 83 -8.375 -0.018 -6.692 1.332 -1.593 -0.567 -1.072 D 73 71 3 74 3 0 0 59 81 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 61 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - A - - MR 75 74 3 77 3 1 3 59 82 -8.375 -0.018 -6.692 1.308 -0.862 -1.295 -0.819 D 76 74 3 77 3 0 0 58 80 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 60 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - u - - MR 78 77 3 80 3 1 2 58 81 -8.375 -0.018 -6.692 -0.298 -0.054 -0.313 0.504 D 79 77 3 80 3 0 0 57 79 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 59 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 55 - a - - MR 81 80 3 83 3 1 2 57 80 -8.375 -0.018 -6.692 0.708 -0.259 -0.467 -0.309 D 82 80 3 83 3 0 0 56 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 58 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 54 - A - - MR 84 83 3 86 3 1 2 56 79 -8.375 -0.018 -6.692 1.340 -1.601 -0.585 -1.081 D 85 83 3 86 3 0 0 54 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 57 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 53 - A - - MR 87 86 3 89 3 1 1 55 78 -3.665 -0.134 -6.692 1.728 -2.415 -2.042 -1.961 D 88 86 3 89 3 0 0 52 74 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 57 80 -1.196 -0.911 -4.974 0.000 0.000 0.000 0.000 [ MATR 30 ] - 49 - G - - MR 90 89 3 92 3 1 1 51 71 -8.375 -0.018 -6.692 -1.626 -2.854 1.734 -2.241 D 91 89 3 92 3 0 0 50 69 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 48 - a - - MR 93 92 3 95 5 1 1 50 70 -7.112 -0.039 -6.927 -7.140 -8.031 0.932 -1.018 -0.514 -0.154 D 94 92 3 95 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 13 47 G C - - MP 96 95 3 100 6 2 2 49 69 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.788 -3.116 -4.891 0.170 -5.297 -4.712 -0.650 -5.137 -4.358 3.649 -4.691 -0.816 -1.034 -4.498 -2.690 -3.767 ML 97 95 3 100 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 14 46 G C - - MP 102 101 6 106 6 2 2 47 67 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.788 -3.116 -4.891 0.170 -5.297 -4.712 -0.650 -5.137 -4.358 3.649 -4.691 -0.816 -1.034 -4.498 -2.690 -3.767 ML 103 101 6 106 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 15 45 C G - - MP 108 107 6 112 6 2 2 45 65 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.965 -3.992 -3.854 -0.362 -0.322 -4.415 3.372 -3.578 -3.895 -0.205 -4.262 -2.103 0.728 -4.131 -0.594 -2.810 ML 109 107 6 112 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 16 44 C G - - MP 114 113 6 118 6 2 2 43 63 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.608 -3.656 -3.517 -0.078 0.798 -4.094 3.061 -3.254 -3.553 0.063 -3.946 -1.815 1.007 -3.780 -0.294 -2.485 ML 115 113 6 118 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 17 43 C G - - MP 120 119 6 124 4 2 2 41 61 -6.885 -8.131 -0.080 -4.584 -4.601 -4.512 -4.282 -0.739 -2.989 -4.687 3.567 -3.804 -4.333 -0.506 -4.589 -2.459 0.520 -4.667 -0.696 -3.171 ML 121 119 6 124 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 40 60 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 38 58 -12.737 -14.007 -2.036 -0.404 IL 124 124 5 124 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 42 - c - - MR 126 125 6 128 3 1 1 39 59 -8.375 -0.018 -6.692 -0.261 0.803 -1.347 0.040 D 127 125 6 128 3 0 0 38 57 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 41 - C - - MR 129 128 3 131 3 1 1 38 58 -8.375 -0.018 -6.692 -1.793 1.638 -2.619 -1.196 D 130 128 3 131 3 0 0 37 56 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 40 - a - - MR 132 131 3 134 5 1 1 37 57 -7.112 -0.039 -6.927 -7.140 -8.031 0.959 -0.636 -0.532 -0.473 D 133 131 3 134 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 18 39 C G - - MP 135 134 3 139 6 2 2 36 56 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.941 -3.904 -3.740 -0.158 -2.564 -4.231 3.195 -3.321 -3.765 0.068 -4.106 -1.914 1.044 -4.041 0.756 -2.623 ML 136 134 3 139 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 19 38 G C - - MP 141 140 6 145 6 2 2 34 54 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.788 -3.116 -4.891 0.170 -5.297 -4.712 -0.650 -5.137 -4.358 3.649 -4.691 -0.816 -1.034 -4.498 -2.690 -3.767 ML 142 140 6 145 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 20 37 C G - - MP 147 146 6 151 6 2 2 32 52 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.601 -4.512 -4.282 -0.739 -2.989 -4.687 3.567 -3.804 -4.333 -0.506 -4.589 -2.459 0.520 -4.667 -0.696 -3.171 ML 148 146 6 151 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 36 U A - - MP 153 152 6 157 6 2 2 30 50 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.244 -4.071 -4.077 -0.362 -3.007 -4.636 1.322 -3.707 -4.081 -0.116 -4.452 -1.968 3.353 -4.394 -0.682 -2.900 ML 154 152 6 157 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 22 35 G C - - MP 159 158 6 163 4 2 2 28 48 -6.971 -7.178 -0.052 -5.592 -4.788 -3.116 -4.891 0.170 -5.297 -4.712 -0.650 -5.137 -4.358 3.649 -4.691 -0.816 -1.034 -4.498 -2.690 -3.767 ML 160 158 6 163 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 23 - U - - - ML 165 164 6 167 3 1 1 26 45 -7.986 -0.020 -6.640 -1.525 -1.515 -2.261 1.629 D 166 164 6 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 24 - A - - - ML 168 167 3 170 3 1 1 25 43 -7.986 -0.020 -6.640 1.728 -2.415 -2.042 -1.961 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - G - - - ML 171 170 3 173 3 1 1 23 42 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 26 - A - - - ML 174 173 3 176 3 1 1 22 41 -7.986 -0.020 -6.640 1.384 -1.648 -0.699 -1.137 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 27 - G - - - ML 177 176 3 179 3 1 1 21 40 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 28 - G - - - ML 180 179 3 182 3 1 1 20 39 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 29 - G - - - ML 183 182 3 185 3 1 1 19 37 -7.986 -0.020 -6.640 -1.626 -2.854 1.734 -2.241 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 30 - A - - - ML 186 185 3 188 3 1 1 18 36 -7.986 -0.020 -6.640 1.728 -2.415 -2.042 -1.961 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 31 - C - - - ML 189 188 3 191 3 1 1 16 35 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 32 - C - - - ML 192 191 3 194 3 1 1 15 33 -7.986 -0.020 -6.640 -1.793 1.638 -2.619 -1.196 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 33 - u - - - ML 195 194 3 197 3 1 1 13 31 -7.986 -0.020 -6.640 -0.066 -0.364 -0.626 0.696 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 34 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.921 -0.448 -1.662 1.277 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RF_site4 ACC RF01090 DESC Edr gene ribosomal frameshift signal LENG 66 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 23:04:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01090/CM NSEQ 7 EFFN 2.361816 CKSUM 3551254120 STATS LOCAL MSV -8.4224 0.71897 STATS LOCAL VITERBI -8.8560 0.71897 STATS LOCAL FORWARD -3.4179 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40702 1.21521 1.23568 1.78474 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 0.00000 * 1 2.71063 3.58992 0.14652 3.16541 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 2 2.71063 3.58992 0.14652 3.16541 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 3 2.71063 3.58992 0.14652 3.16541 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 4 0.15327 3.24932 2.97241 2.95421 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 5 0.40010 2.62013 1.86964 2.27523 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 6 0.15327 3.24932 2.97241 2.95421 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 7 2.85849 0.19895 3.43461 2.39889 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 8 2.61934 2.58171 3.13713 0.21307 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 9 2.85849 0.19895 3.43461 2.39889 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 10 2.85849 0.19895 3.43461 2.39889 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 11 2.85849 0.19895 3.43461 2.39889 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 12 1.57886 0.82149 2.37016 1.34497 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 13 2.58847 3.24636 0.16896 3.18424 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 14 2.59063 3.24893 0.16848 3.18781 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 15 2.89161 0.31052 2.69950 1.93649 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 16 2.67915 0.40323 2.49283 1.71177 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 17 3.20465 0.23805 2.98137 2.11577 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 18 2.74047 0.49071 2.51275 1.41788 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 19 2.58824 3.24608 0.16902 3.18386 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 20 3.20216 0.23832 2.98019 2.11534 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 21 2.97834 1.91095 2.73103 0.30648 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 22 2.59026 3.24849 0.16856 3.18720 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 23 2.61934 2.58171 3.13713 0.21307 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 24 0.15327 3.24932 2.97241 2.95421 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 25 2.71063 3.58992 0.14652 3.16541 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 26 0.39080 2.63159 1.89621 2.28883 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 27 2.71063 3.58992 0.14652 3.16541 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 28 2.71063 3.58992 0.14652 3.16541 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 29 2.71063 3.58992 0.14652 3.16541 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 30 0.15327 3.24932 2.97241 2.95421 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 31 2.85849 0.19895 3.43461 2.39889 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 32 2.85849 0.19895 3.43461 2.39889 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 33 1.44499 1.64523 1.82730 0.89053 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 34 2.12513 1.72219 2.64338 0.46079 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 35 3.38993 0.19937 3.08415 2.28995 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 36 0.34747 2.91632 1.74796 2.72929 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 37 2.39437 3.15056 0.20525 2.96619 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 38 3.39827 0.19863 3.08783 2.29153 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 39 1.97517 2.68087 0.33998 2.51358 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 40 0.69270 1.83887 1.77157 1.76778 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 41 2.85849 0.19895 3.43461 2.39889 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 42 1.60431 0.78267 2.39607 1.38345 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 43 2.39347 3.14934 0.20551 2.96472 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 44 1.37081 2.65642 0.52736 2.45644 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 45 1.84629 2.86523 0.33385 2.67295 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 46 3.40144 0.19835 3.08922 2.29213 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 47 3.40721 0.19784 3.09175 2.29322 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 48 0.71587 2.13689 1.75644 1.51163 48 a - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 49 2.71063 3.58992 0.14652 3.16541 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.13875 2.20125 3.96902 1.14632 0.38244 1.09861 0.40547 50 0.15327 3.24932 2.97241 2.95421 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 51 0.42194 2.59522 1.80961 2.24544 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 52 0.87568 1.55748 1.71944 1.64203 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 53 1.62816 1.40964 1.59468 1.03141 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 54 0.44026 2.01290 2.37189 2.04617 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 55 0.42730 2.58952 1.79537 2.23857 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 56 1.28552 2.03381 2.26039 0.71673 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 57 0.39887 2.62161 1.87313 2.27700 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 58 0.42194 2.59522 1.80961 2.24544 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 59 1.64596 2.82536 0.41666 2.42319 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 60 2.71063 3.58992 0.14652 3.16541 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 61 2.61934 2.58171 3.13713 0.21307 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 62 2.85849 0.19895 3.43461 2.39889 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 63 2.85849 0.19895 3.43461 2.39889 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 64 2.85849 0.19895 3.43461 2.39889 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 65 1.73794 0.53034 2.63164 1.80939 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 66 0.46787 1.94358 2.34734 2.00360 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.01944 3.94995 * 1.46634 0.26236 0.00000 * //