INFERNAL1/a [1.1.4 | Dec 2020] NAME RF_site4 ACC RF01090 DESC Edr gene ribosomal frameshift signal STATES 202 NODES 58 CLEN 66 W 84 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 14:03:59 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 1.992676 CKSUM 3551254120 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 50.30 NC 37.10 EFP7GF -9.4812 0.71902 ECMLC 0.53997 -10.20260 1.48891 1600000 662068 0.001813 ECMGC 0.41534 -18.36317 -4.69639 1600000 116746 0.003426 ECMLI 0.53573 -7.70037 3.22997 1600000 419055 0.002864 ECMGI 0.42799 -13.91836 -1.58714 1600000 78367 0.005104 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 108 -6.974 -7.181 -0.052 -5.595 IL 1 1 2 1 4 1 21 88 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 87 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 21 84 108 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 4 2 3 5 3 0 15 83 106 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 86 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 20 83 107 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 7 5 3 8 3 0 14 82 105 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 85 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 19 82 106 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 10 8 3 11 3 0 14 81 104 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 84 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 18 81 105 -7.988 -0.020 -6.642 1.729 -2.420 -2.047 -1.967 D 13 11 3 14 3 0 13 80 103 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 83 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 80 104 -7.988 -0.020 -6.642 1.382 -1.647 -0.692 -1.136 D 16 14 3 17 3 0 12 79 102 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 17 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 79 103 -7.988 -0.020 -6.642 1.729 -2.420 -2.047 -1.967 D 19 17 3 20 3 0 11 78 101 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 16 78 102 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 22 20 3 23 3 0 10 77 100 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 15 77 101 -7.988 -0.020 -6.642 -1.530 -1.519 -2.266 1.631 D 25 23 3 26 3 0 10 76 99 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 14 76 100 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 28 26 3 29 3 0 9 75 98 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 13 75 99 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 31 29 3 32 3 0 8 74 97 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 12 74 98 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 34 32 3 35 3 0 7 73 96 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 11 73 97 -8.377 -0.018 -6.695 -0.250 0.774 -1.332 0.073 D 37 35 3 38 3 0 7 72 95 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 10 74 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 69 - A - - MR 39 38 3 41 3 1 11 72 96 -8.377 -0.018 -6.695 1.281 -0.799 -1.275 -0.782 D 40 38 3 41 3 0 5 70 94 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 10 73 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 68 - C - - MR 42 41 3 44 3 1 10 71 95 -8.377 -0.018 -6.695 -0.443 1.161 -1.640 -0.500 D 43 41 3 44 3 0 4 69 93 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 9 72 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 67 - C - - MR 45 44 3 47 3 1 9 70 94 -8.377 -0.018 -6.695 -1.800 1.640 -2.625 -1.201 D 46 44 3 47 3 0 3 68 92 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 8 71 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 66 - C - - MR 48 47 3 50 3 1 8 69 93 -8.377 -0.018 -6.695 -1.800 1.640 -2.625 -1.201 D 49 47 3 50 3 0 2 67 91 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 7 70 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 65 - C - - MR 51 50 3 53 3 1 8 68 92 -8.377 -0.018 -6.695 -1.800 1.640 -2.625 -1.201 D 52 50 3 53 3 0 2 66 90 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 6 69 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 64 - U - - MR 54 53 3 56 3 1 7 67 91 -8.377 -0.018 -6.695 -1.530 -1.519 -2.266 1.631 D 55 53 3 56 3 0 1 65 89 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 68 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 63 - G - - MR 57 56 3 59 3 1 6 66 90 -8.377 -0.018 -6.695 -1.632 -2.860 1.735 -2.247 D 58 56 3 59 3 0 0 64 88 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 5 67 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - G - - MR 60 59 3 62 3 1 6 65 89 -8.377 -0.018 -6.695 -0.167 -1.814 1.261 -1.223 D 61 59 3 62 3 0 0 63 87 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 66 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - A - - MR 63 62 3 65 3 1 5 64 88 -8.377 -0.018 -6.695 1.283 -1.551 -0.448 -1.022 D 64 62 3 65 3 0 0 62 86 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 65 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - A - - MR 66 65 3 68 3 1 4 63 87 -8.377 -0.018 -6.695 1.384 -1.649 -0.696 -1.138 D 67 65 3 68 3 0 0 61 85 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 3 64 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 59 - u - - MR 69 68 3 71 3 1 4 62 86 -8.377 -0.018 -6.695 0.212 -0.851 -1.154 0.878 D 70 68 3 71 3 0 0 60 84 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 63 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - A - - MR 72 71 3 74 3 1 3 61 85 -8.377 -0.018 -6.695 1.344 -1.607 -0.595 -1.088 D 73 71 3 74 3 0 0 59 83 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 62 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - A - - MR 75 74 3 77 3 1 3 60 84 -8.377 -0.018 -6.695 1.320 -0.889 -1.306 -0.837 D 76 74 3 77 3 0 0 58 82 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 61 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - u - - MR 78 77 3 80 3 1 2 59 83 -8.377 -0.018 -6.695 -0.302 -0.004 -0.338 0.486 D 79 77 3 80 3 0 0 57 81 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 60 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 55 - a - - MR 81 80 3 83 3 1 2 58 82 -8.377 -0.018 -6.695 0.678 -0.283 -0.380 -0.304 D 82 80 3 83 3 0 0 56 80 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 59 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 54 - A - - MR 84 83 3 86 3 1 2 57 81 -8.377 -0.018 -6.695 1.283 -1.551 -0.448 -1.022 D 85 83 3 86 3 0 0 55 78 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 58 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 53 - A - - MR 87 86 3 89 3 1 1 56 80 -3.421 -0.157 -6.695 1.729 -2.420 -2.047 -1.967 D 88 86 3 89 3 0 0 53 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 58 82 -1.139 -0.953 -5.089 0.000 0.000 0.000 0.000 [ MATR 30 ] - 49 - G - - MR 90 89 3 92 3 1 1 51 71 -8.377 -0.018 -6.695 -1.632 -2.860 1.735 -2.247 D 91 89 3 92 3 0 0 50 69 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 48 - a - - MR 93 92 3 95 5 1 1 50 70 -7.114 -0.038 -6.930 -7.142 -8.034 0.953 -1.032 -0.534 -0.177 D 94 92 3 95 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 13 47 G C - - MP 96 95 3 100 6 2 2 49 69 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -4.793 -3.118 -4.897 0.166 -5.304 -4.714 -0.656 -5.143 -4.361 3.650 -4.694 -0.819 -1.040 -4.501 -2.696 -3.772 ML 97 95 3 100 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 14 46 G C - - MP 102 101 6 106 6 2 2 47 67 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -4.793 -3.118 -4.897 0.166 -5.304 -4.714 -0.656 -5.143 -4.361 3.650 -4.694 -0.819 -1.040 -4.501 -2.696 -3.772 ML 103 101 6 106 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 15 45 C G - - MP 108 107 6 112 6 2 2 45 65 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -3.863 -3.896 -3.761 -0.280 -0.030 -4.329 3.308 -3.490 -3.799 -0.129 -4.176 -2.020 0.805 -4.032 -0.514 -2.720 ML 109 107 6 112 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 16 44 C G - - MP 114 113 6 118 6 2 2 43 63 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -3.584 -3.635 -3.492 -0.061 0.944 -4.067 3.013 -3.226 -3.527 0.078 -3.921 -1.799 1.029 -3.755 -0.266 -2.461 ML 115 113 6 118 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 17 43 C G - - MP 120 119 6 124 4 2 2 41 61 -6.888 -8.133 -0.080 -4.587 -4.607 -4.518 -4.287 -0.744 -2.992 -4.691 3.568 -3.808 -4.338 -0.512 -4.593 -2.465 0.516 -4.672 -0.700 -3.176 ML 121 119 6 124 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 40 60 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 38 58 -12.737 -14.007 -2.036 -0.404 IL 124 124 5 124 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 42 - c - - MR 126 125 6 128 3 1 1 39 59 -8.377 -0.018 -6.695 -0.282 0.826 -1.364 0.023 D 127 125 6 128 3 0 0 38 57 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 41 - C - - MR 129 128 3 131 3 1 1 38 58 -8.377 -0.018 -6.695 -1.800 1.640 -2.625 -1.201 D 130 128 3 131 3 0 0 37 56 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 40 - a - - MR 132 131 3 134 5 1 1 37 57 -7.114 -0.038 -6.930 -7.142 -8.034 0.979 -0.657 -0.551 -0.489 D 133 131 3 134 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 18 39 C G - - MP 135 134 3 139 6 2 2 36 56 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -3.954 -3.918 -3.751 -0.170 -2.571 -4.240 3.206 -3.329 -3.776 0.056 -4.116 -1.926 1.035 -4.054 0.727 -2.634 ML 136 134 3 139 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 19 38 G C - - MP 141 140 6 145 6 2 2 34 54 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -4.793 -3.118 -4.897 0.166 -5.304 -4.714 -0.656 -5.143 -4.361 3.650 -4.694 -0.819 -1.040 -4.501 -2.696 -3.772 ML 142 140 6 145 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 20 37 C G - - MP 147 146 6 151 6 2 2 32 52 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -4.607 -4.518 -4.287 -0.744 -2.992 -4.691 3.568 -3.808 -4.338 -0.512 -4.593 -2.465 0.516 -4.672 -0.700 -3.176 ML 148 146 6 151 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 36 U A - - MP 153 152 6 157 6 2 2 30 50 -9.117 -9.057 -0.021 -7.833 -8.113 -8.508 -4.250 -4.077 -4.082 -0.367 -3.011 -4.641 1.319 -3.711 -4.086 -0.122 -4.456 -1.974 3.356 -4.399 -0.686 -2.904 ML 154 152 6 157 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 22 35 G C - - MP 159 158 6 163 4 2 2 28 47 -6.974 -7.181 -0.052 -5.595 -4.793 -3.118 -4.897 0.166 -5.304 -4.714 -0.656 -5.143 -4.361 3.650 -4.694 -0.819 -1.040 -4.501 -2.696 -3.772 ML 160 158 6 163 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 23 - U - - - ML 165 164 6 167 3 1 1 26 45 -7.988 -0.020 -6.642 -1.530 -1.519 -2.266 1.631 D 166 164 6 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 24 - A - - - ML 168 167 3 170 3 1 1 25 43 -7.988 -0.020 -6.642 1.729 -2.420 -2.047 -1.967 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - G - - - ML 171 170 3 173 3 1 1 23 42 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 26 - A - - - ML 174 173 3 176 3 1 1 22 41 -7.988 -0.020 -6.642 1.395 -1.662 -0.726 -1.153 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 27 - G - - - ML 177 176 3 179 3 1 1 21 40 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 28 - G - - - ML 180 179 3 182 3 1 1 20 39 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 29 - G - - - ML 183 182 3 185 3 1 1 19 37 -7.988 -0.020 -6.642 -1.632 -2.860 1.735 -2.247 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 30 - A - - - ML 186 185 3 188 3 1 1 18 36 -7.988 -0.020 -6.642 1.729 -2.420 -2.047 -1.967 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 31 - C - - - ML 189 188 3 191 3 1 1 16 35 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 32 - C - - - ML 192 191 3 194 3 1 1 15 33 -7.988 -0.020 -6.642 -1.800 1.640 -2.625 -1.201 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 33 - u - - - ML 195 194 3 197 3 1 1 13 31 -7.988 -0.020 -6.642 -0.083 -0.377 -0.647 0.720 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 34 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.932 -0.470 -1.673 1.287 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RF_site4 ACC RF01090 DESC Edr gene ribosomal frameshift signal LENG 66 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Mar 5 14:03:59 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 2.368652 CKSUM 3551254120 STATS LOCAL MSV -8.3446 0.71902 STATS LOCAL VITERBI -8.8519 0.71902 STATS LOCAL FORWARD -3.4062 0.71902 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40473 1.21472 1.23809 1.78476 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 0.00000 * 1 2.71401 3.59376 0.14595 3.16924 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 2 2.71401 3.59376 0.14595 3.16924 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 3 2.71401 3.59376 0.14595 3.16924 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 4 0.15272 3.25260 2.97537 2.95783 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 5 0.39234 2.63074 1.89048 2.28770 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 6 0.15272 3.25260 2.97537 2.95783 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 7 2.86248 0.19816 3.43862 2.40210 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 8 2.62242 2.58427 3.14033 0.21238 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 9 2.86248 0.19816 3.43862 2.40210 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 10 2.86248 0.19816 3.43862 2.40210 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 11 2.86248 0.19816 3.43862 2.40210 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 12 1.59532 0.80367 2.38366 1.35766 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 13 2.59044 3.24954 0.16849 3.18732 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 14 2.59266 3.25218 0.16799 3.19099 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 15 2.82432 0.33617 2.63364 1.86862 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 16 2.67123 0.40864 2.48595 1.69807 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 17 3.20794 0.23725 2.98510 2.11833 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 18 2.74850 0.48377 2.52093 1.43073 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 19 2.59035 3.24942 0.16851 3.18716 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 20 3.20551 0.23751 2.98394 2.11791 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 21 2.98203 1.91369 2.73513 0.30532 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 22 2.59236 3.25183 0.16806 3.19049 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 23 2.62242 2.58427 3.14033 0.21238 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 24 0.15272 3.25260 2.97537 2.95783 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 25 2.71401 3.59376 0.14595 3.16924 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 26 0.38330 2.64231 1.91684 2.30137 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 27 2.71401 3.59376 0.14595 3.16924 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 28 2.71401 3.59376 0.14595 3.16924 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 29 2.71401 3.59376 0.14595 3.16924 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 30 0.15272 3.25260 2.97537 2.95783 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 31 2.86248 0.19816 3.43862 2.40210 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 32 2.86248 0.19816 3.43862 2.40210 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 33 1.45818 1.65547 1.84332 0.87216 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 34 2.13377 1.73927 2.65166 0.45346 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 35 3.39307 0.19880 3.08755 2.29200 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 36 0.34614 2.92048 1.75071 2.73294 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 37 2.39697 3.15433 0.20455 2.96958 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 38 3.40145 0.19805 3.09125 2.29359 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 39 1.98100 2.68905 0.33716 2.52160 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 40 0.67863 1.85513 1.78632 1.77975 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 41 2.86248 0.19816 3.43862 2.40210 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 42 1.62121 0.76572 2.40999 1.39625 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 43 2.39606 3.15307 0.20481 2.96807 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 44 1.31347 2.64921 0.55520 2.44817 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 45 1.72211 2.79912 0.37612 2.60468 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 46 3.40452 0.19778 3.09260 2.29417 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 47 3.41029 0.19728 3.09513 2.29526 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 48 0.70050 2.14739 1.77156 1.52875 48 a - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 49 2.71401 3.59376 0.14595 3.16924 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.15902 2.05450 3.97031 1.13948 0.38564 1.09861 0.40547 50 0.15272 3.25260 2.97537 2.95783 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 51 0.46215 2.55724 1.70572 2.19904 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 52 0.89816 1.57538 1.65370 1.63777 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 53 1.63151 1.37238 1.61358 1.04501 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 54 0.43206 2.03318 2.38072 2.06023 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 55 0.41879 2.59978 1.81679 2.25076 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 56 1.24128 2.02858 2.24293 0.74799 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 57 0.39114 2.63224 1.89394 2.28948 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 58 0.46215 2.55724 1.70572 2.19904 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 59 1.53997 2.75808 0.46624 2.35555 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 60 2.71401 3.59376 0.14595 3.16924 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 61 2.62242 2.58427 3.14033 0.21238 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 62 2.86248 0.19816 3.43862 2.40210 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 63 2.86248 0.19816 3.43862 2.40210 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 64 2.86248 0.19816 3.43862 2.40210 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 65 1.75859 0.51975 2.64656 1.81923 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.03847 3.97031 3.97031 1.46634 0.26236 1.09861 0.40547 66 0.45894 1.96430 2.35593 2.01752 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.01942 3.95126 * 1.46634 0.26236 0.00000 * //