# STOCKHOLM 1.0
#=GF ID UPD-PK2
#=GF AC RF01083
#=GF DE Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 32.0
#=GF NC 31.9
#=GF TC 32.0
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.74 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00059;
#=GF DR PKBASE; PKB00063;
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 0046782; regulation of viral transcription;
#=GF DR GO; 1904973; positive regulation of viral translation;
#=GF RN [1]
#=GF RM 8666266
#=GF RT The complete sequence of a Singapore isolate of odontoglossum ringspot
#=GF RT virus and comparison with other tobamoviruses.
#=GF RA Chng CG, Wong SM, Mahtani PH, Loh CS, Goh CJ, Kao MC, Chung MC, Watanabe Y
#=GF RL Gene. 1996;171:155-161.
#=GF RN [2]
#=GF RM 7931178
#=GF RT Similarities between the secondary structure of satellite tobacco mosaic
#=GF RT virus and tobamovirus RNAs.
#=GF RA Gultyaev AP, van Batenburg E, Pleij CW
#=GF RL J Gen Virol. 1994;75:2851-2856.
#=GF WK UPSK_RNA
#=GF SQ 4

AM055643.1/1046-1066 CGUGGUGCAUACGAUAAUGCA
X82130.1/6244-6264   GCUGGUGCAUACGAUAAUGCA
U34586.1/6451-6471   CGUGGUGCAUACGAUAAUGCA
X55295.1/733-753     CGUGGUGCAUACGAUAAUGCA
#=GC SS_cons         AAA::<<<<<aaa___>>>>>
#=GC RF              CGUGGUGCAUACGAUAAUGCA
//
