# STOCKHOLM 1.0
#=GF ID UPD-PKib
#=GF AC RF01080
#=GF DE Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 39.0
#=GF NC 35.7
#=GF TC 48.7
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.62 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00202;
#=GF DR PKBASE; PKB00118;
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 0046782; regulation of viral transcription;
#=GF DR GO; 1904973; positive regulation of viral translation;
#=GF RN [1]
#=GF RM 10603167
#=GF RT Molecular characterization of a new furovirus mainly infecting rye.
#=GF RA Koenig R, Pleij CW, Huth W
#=GF RL Arch Virol. 1999;144:2125-2140.
#=GF RN [2]
#=GF RM 9714254
#=GF RT Genome properties of beet virus Q, a new furo-like virus from sugarbeet,
#=GF RT determined from unpurified virus.
#=GF RA Koenig R, Pleij CW, Beier C, Commandeur U
#=GF RL J Gen Virol. 1998;79:2027-2036.
#=GF WK UPSK_RNA
#=GF SQ 4

AJ271839.1/3358-3389 GGUGCUUGCUAUUUCACCUAAAUCGAAAUAGC
AB033689.1/7019-7050 GGUGCUUGUUAGUUCACCUAAAUCGAACUAAC
U64512.1/3276-3307   GGUGCUUUUAUGUUCACCGAAAUCGAACAUAC
AJ749657.1/3098-3129 GGUGCUUGUUAUUUCACCUAAAUCGAAAUAAC
#=GC SS_cons         AAAA:::<<<<<<<aaaa_______>>>>>>>
#=GC RF              GGUGCUUGUuagUUCACCUAAAUCGAAcuaAC
//
