INFERNAL1/a [1.1.5 | Sep 2023] NAME RF_site2 ACC RF01076 DESC Polymerase ribosomal frameshift site STATES 220 NODES 62 CLEN 72 W 88 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:01:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01076/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.378906 CKSUM 3145347566 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 82.50 NC 36.20 EFP7GF -6.4572 0.72186 ECMLC 0.58572 -6.73559 3.29558 1600000 427435 0.002807 ECMGC 0.48891 -14.66806 -3.30809 1600000 103310 0.003872 ECMLI 0.58976 -3.68548 5.20922 1600000 227714 0.005270 ECMGI 0.52143 -9.73946 0.10883 1600000 67956 0.005886 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 108 -6.703 -6.910 -0.063 -5.324 IL 1 1 2 1 4 1 23 92 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 23 88 108 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 4 2 3 5 3 0 18 87 106 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 22 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 22 87 107 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 7 5 3 8 3 0 17 85 105 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 21 86 106 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 10 8 3 11 3 0 16 84 104 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 21 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 20 85 105 -7.738 -0.024 -6.392 1.601 -1.922 -1.599 -1.423 D 13 11 3 14 3 0 15 83 103 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 20 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 19 84 103 -7.738 -0.024 -6.392 1.601 -1.922 -1.599 -1.423 D 16 14 3 17 3 0 15 82 102 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 19 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 19 83 102 -7.738 -0.024 -6.392 1.601 -1.922 -1.599 -1.423 D 19 17 3 20 3 0 14 81 101 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 18 82 101 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 22 20 3 23 3 0 13 80 100 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 17 81 100 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 25 23 3 26 3 0 12 79 99 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 17 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 16 80 99 -7.738 -0.024 -6.392 -1.099 -2.236 1.583 -1.620 D 28 26 3 29 3 0 11 78 98 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 16 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 15 78 98 -7.738 -0.024 -6.392 -0.531 0.372 -1.286 0.681 D 31 29 3 32 3 0 11 77 97 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 14 77 97 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 34 32 3 35 3 0 10 76 96 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 13 76 96 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 37 35 3 38 3 0 9 75 95 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 13 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 72 - A - - MR 39 38 3 41 3 1 13 75 95 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 40 38 3 41 3 0 7 74 93 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 12 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 71 - U - - MR 42 41 3 44 3 1 12 74 94 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 43 41 3 44 3 0 7 73 92 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 11 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 70 - G - - MR 45 44 3 47 3 1 11 73 93 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 46 44 3 47 3 0 6 72 91 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 10 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 69 - G - - MR 48 47 3 50 3 1 10 72 92 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 49 47 3 50 3 0 5 71 90 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 10 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 68 - C - - MR 51 50 3 53 3 1 10 71 91 -8.144 -0.022 -6.462 -1.210 1.443 -2.009 -0.734 D 52 50 3 53 3 0 4 70 89 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 9 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 67 - G - - MR 54 53 3 56 3 1 9 70 90 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 55 53 3 56 3 0 3 69 88 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 8 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 66 - a - - MR 57 56 3 59 3 1 8 69 89 -8.144 -0.022 -6.462 0.659 -1.209 0.418 -0.615 D 58 56 3 59 3 0 3 68 87 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 7 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 65 - C - - MR 60 59 3 62 3 1 8 68 88 -8.144 -0.022 -6.462 -1.210 1.443 -2.009 -0.734 D 61 59 3 62 3 0 2 67 86 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 6 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 64 - A - - MR 63 62 3 65 3 1 7 67 87 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 64 62 3 65 3 0 1 66 85 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 6 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 63 - A - - MR 66 65 3 68 3 1 6 66 86 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 67 65 3 68 3 0 1 65 84 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 5 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 62 - A - - MR 69 68 3 71 3 1 6 65 85 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 70 68 3 71 3 0 0 64 83 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 4 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 61 - G - - MR 72 71 3 74 3 1 5 64 84 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 73 71 3 74 3 0 0 63 82 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 4 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 60 - U - - MR 75 74 3 77 3 1 4 63 83 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 76 74 3 77 3 0 0 62 81 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 59 - C - - MR 78 77 3 80 3 1 4 62 82 -8.144 -0.022 -6.462 -1.210 1.443 -2.009 -0.734 D 79 77 3 80 3 0 0 61 80 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 58 - A - - MR 81 80 3 83 3 1 3 61 81 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 82 80 3 83 3 0 0 60 79 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 57 - u - - MR 84 83 3 86 3 1 3 60 80 -8.144 -0.022 -6.462 -0.257 -0.822 0.259 0.486 D 85 83 3 86 3 0 0 59 78 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 56 - U - - MR 87 86 3 89 3 1 2 59 79 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 88 86 3 89 3 0 0 58 77 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 55 - G - - MR 90 89 3 92 3 1 2 58 78 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 91 89 3 92 3 0 0 57 76 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 54 - U - - MR 93 92 3 95 3 1 2 57 77 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 94 92 3 95 3 0 0 56 75 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 53 - U - - MR 96 95 3 98 3 1 1 56 76 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 97 95 3 98 3 0 0 55 74 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 52 - G - - MR 99 98 3 101 3 1 1 55 75 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 100 98 3 101 3 0 0 54 73 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 51 - a - - MR 102 101 3 104 3 1 1 54 74 -8.144 -0.022 -6.462 0.659 -1.209 0.418 -0.615 D 103 101 3 104 3 0 0 53 72 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 50 - U - - MR 105 104 3 107 3 1 1 53 73 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 106 104 3 107 3 0 0 52 71 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 49 - u - - MR 108 107 3 110 5 1 1 52 72 -6.898 -0.045 -6.713 -6.926 -7.817 -0.531 0.372 -1.286 0.681 D 109 107 3 110 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 13 48 G C - - MP 111 110 3 115 6 2 2 51 71 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 112 110 3 115 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 14 47 C G - - MP 117 116 6 121 6 2 2 49 69 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 118 116 6 121 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 15 46 C G - - MP 123 122 6 127 6 2 2 47 67 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 124 122 6 127 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 16 45 G C - - MP 129 128 6 133 6 2 2 45 65 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 130 128 6 133 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 17 44 C G - - MP 135 134 6 139 6 2 2 43 63 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 136 134 6 139 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 18 43 C G - - MP 141 140 6 145 4 2 2 41 61 -6.703 -6.910 -0.063 -5.324 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 142 140 6 145 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - A - - - ML 147 146 6 149 5 1 1 39 58 -6.898 -0.045 -6.713 -6.926 -7.817 1.601 -1.922 -1.599 -1.423 D 148 146 6 149 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 149 149 3 149 5 1 1 39 58 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 20 42 G C - - MP 150 149 3 154 6 2 2 38 57 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 151 149 3 154 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 21 41 C G - - MP 156 155 6 160 6 2 2 36 55 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 157 155 6 160 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 22 40 G C - - MP 162 161 6 166 6 2 2 34 53 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 163 161 6 166 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 23 39 g c - - MP 168 167 6 172 6 2 2 32 51 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.359 -2.414 -3.405 1.956 -3.695 -4.246 0.670 -3.642 -3.382 2.776 -3.850 -0.056 0.343 -3.544 -1.287 -2.312 ML 169 167 6 172 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 24 38 C G - - MP 174 173 6 178 6 2 2 30 49 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 175 173 6 178 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 25 37 u g - - MP 180 179 6 184 4 2 2 28 47 -6.703 -6.910 -0.063 -5.324 -3.648 -3.548 -3.450 0.072 -2.357 -3.951 1.916 -3.083 -3.487 0.346 -3.826 -1.563 1.135 -3.773 2.658 -2.381 ML 181 179 6 184 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 26 - U - - - ML 186 185 6 188 3 1 1 25 44 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 187 185 6 188 3 0 0 24 43 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 27 - G - - - ML 189 188 3 191 3 1 1 24 43 -7.738 -0.024 -6.392 -1.099 -2.236 1.583 -1.620 D 190 188 3 191 3 0 0 23 42 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 28 - A - - - ML 192 191 3 194 3 1 1 23 41 -7.738 -0.024 -6.392 1.601 -1.922 -1.599 -1.423 D 193 191 3 194 3 0 0 21 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 29 - C - - - ML 195 194 3 197 3 1 1 21 40 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 196 194 3 197 3 0 0 20 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 30 - C - - - ML 198 197 3 200 3 1 1 20 39 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 199 197 3 200 3 0 0 19 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 31 - C - - - ML 201 200 3 203 3 1 1 19 38 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 32 - G - - - ML 204 203 3 206 3 1 1 18 36 -7.738 -0.024 -6.392 -1.099 -2.236 1.583 -1.620 D 205 203 3 206 3 0 0 17 36 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 33 - C - - - ML 207 206 3 209 3 1 1 16 35 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 34 - U - - - ML 210 209 3 212 3 1 1 15 33 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 35 - G - - - ML 213 212 3 215 3 1 1 13 32 -7.738 -0.024 -6.392 -1.099 -2.236 1.583 -1.620 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 36 - U - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 -1.081 -1.151 -1.790 1.479 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RF_site2 ACC RF01076 DESC Polymerase ribosomal frameshift site LENG 72 MAXL 163 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:01:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01076/CM NSEQ 2 EFFN 1.488281 CKSUM 3145347566 STATS LOCAL MSV -8.1894 0.72186 STATS LOCAL VITERBI -9.1456 0.72186 STATS LOCAL FORWARD -3.2485 0.72186 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51069 1.39155 1.25985 1.39895 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.19321 2.23103 2.68859 0.33821 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.19321 2.23103 2.68859 0.33821 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.19321 2.23103 2.68859 0.33821 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.25690 2.78332 2.55301 2.44326 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.25690 2.78332 2.55301 2.44326 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.25690 2.78332 2.55301 2.44326 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.30010 0.35560 2.85851 1.95444 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.19321 2.23103 2.68859 0.33821 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.21786 3.01907 0.26464 2.59258 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.77918 1.11469 2.30587 0.90749 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.19321 2.23103 2.68859 0.33821 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.25690 2.78332 2.55301 2.44326 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.29417 2.75284 0.26355 2.70177 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.74971 0.38171 2.46197 1.78325 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.75156 0.38138 2.46269 1.78351 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.29807 2.75639 0.26228 2.70705 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.75192 0.38131 2.46283 1.78357 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.75158 0.38137 2.46270 1.78352 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.25690 2.78332 2.55301 2.44326 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.29657 2.75503 0.26277 2.70502 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.75105 0.38147 2.46249 1.78344 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.29781 2.75615 0.26237 2.70669 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.30582 2.21086 0.69563 2.11460 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.75123 0.38144 2.46256 1.78347 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.52533 1.37634 2.25576 0.57506 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.19321 2.23103 2.68859 0.33821 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.21786 3.01907 0.26464 2.59258 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.25690 2.78332 2.55301 2.44326 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.30010 0.35560 2.85851 1.95444 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.30010 0.35560 2.85851 1.95444 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.30010 0.35560 2.85851 1.95444 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.21786 3.01907 0.26464 2.59258 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.30010 0.35560 2.85851 1.95444 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.19321 2.23103 2.68859 0.33821 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.21786 3.01907 0.26464 2.59258 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.19321 2.23103 2.68859 0.33821 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.85400 2.42489 0.42697 2.27870 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.05528 2.62724 0.33109 2.50687 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.34447 0.80002 2.02717 1.12986 39 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.92032 0.30687 2.58268 2.00420 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.05264 2.62437 0.33230 2.50292 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.90500 0.30917 2.57681 2.00117 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.05615 2.62818 0.33069 2.50816 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.05645 2.62851 0.33055 2.50862 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.92890 0.30561 2.58594 2.00588 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.05725 2.62937 0.33019 2.50981 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.05775 2.62991 0.32996 2.51056 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.93386 0.30488 2.58781 2.00685 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.77918 1.11469 2.30587 0.90749 49 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.19321 2.23103 2.68859 0.33821 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.92244 2.25076 1.08397 1.83957 51 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.21786 3.01907 0.26464 2.59258 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.19321 2.23103 2.68859 0.33821 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.19321 2.23103 2.68859 0.33821 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.21786 3.01907 0.26464 2.59258 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.19321 2.23103 2.68859 0.33821 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.58019 1.97267 1.19549 1.04293 57 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.25690 2.78332 2.55301 2.44326 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.30010 0.35560 2.85851 1.95444 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.19321 2.23103 2.68859 0.33821 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.21786 3.01907 0.26464 2.59258 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.25690 2.78332 2.55301 2.44326 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.25690 2.78332 2.55301 2.44326 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.25690 2.78332 2.55301 2.44326 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.30010 0.35560 2.85851 1.95444 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 0.92244 2.25076 1.08397 1.83957 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.21786 3.01907 0.26464 2.59258 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 2.30010 0.35560 2.85851 1.95444 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 69 2.21786 3.01907 0.26464 2.59258 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 70 2.21786 3.01907 0.26464 2.59258 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 71 2.19321 2.23103 2.68859 0.33821 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 72 0.25690 2.78332 2.55301 2.44326 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //