INFERNAL1/a [1.1.5 | Sep 2023] NAME TLS-PK1 ACC RF01075 DESC Pseudoknot of tRNA-like structure STATES 305 NODES 81 CLEN 97 W 114 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 11:23:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01075/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 0.847656 CKSUM 2583789186 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 118.30 NC 61.30 EFP7GF -6.4566 0.71854 ECMLC 0.66620 -7.86075 0.68214 1600000 355519 0.003375 ECMGC 0.44928 -13.19003 -3.79824 1600000 27202 0.014705 ECMLI 0.56939 -7.04447 2.31375 1600000 247342 0.004852 ECMGI 0.46643 -8.59606 0.44541 1600000 27138 0.014739 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 114 134 -6.418 -6.625 -0.077 -5.039 IL 1 1 2 1 4 13 47 118 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 47 117 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 13 46 114 134 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 4 2 3 5 3 9 43 113 133 -5.620 -0.734 -1.403 IL 5 5 3 5 3 12 46 115 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 97 - A - - MR 6 5 3 8 3 12 45 113 133 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 7 5 3 8 3 8 41 111 132 -6.390 -1.568 -0.620 IR 8 8 3 8 3 11 45 114 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 96 - C - - MR 9 8 3 11 3 12 44 112 132 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 10 8 3 11 3 7 41 110 131 -6.390 -1.568 -0.620 IR 11 11 3 11 3 11 44 113 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 95 - C - - MR 12 11 3 14 3 11 44 111 131 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 13 11 3 14 3 7 40 109 130 -6.390 -1.568 -0.620 IR 14 14 3 14 3 10 43 112 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 94 - A - - MR 15 14 3 17 3 11 43 110 130 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 16 14 3 17 3 6 39 108 129 -6.390 -1.568 -0.620 IR 17 17 3 17 3 10 43 111 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 93 - G - - MR 18 17 3 20 3 10 42 109 129 -7.907 -0.026 -6.225 -0.580 -1.609 1.324 -0.999 D 19 17 3 20 3 6 38 107 128 -6.390 -1.568 -0.620 IR 20 20 3 20 3 9 42 110 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 92 - A - - MR 21 20 3 23 3 9 41 108 128 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 22 20 3 23 3 6 38 106 127 -6.390 -1.568 -0.620 IR 23 23 3 23 3 9 41 109 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 91 - A - - MR 24 23 3 26 3 8 40 107 127 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 25 23 3 26 3 5 37 105 126 -6.390 -1.568 -0.620 IR 26 26 3 26 3 8 40 108 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 90 - G - - MR 27 26 3 29 3 8 39 106 126 -7.907 -0.026 -6.225 -0.580 -1.609 1.324 -0.999 D 28 26 3 29 3 5 36 104 125 -6.390 -1.568 -0.620 IR 29 29 3 29 3 7 39 107 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 89 - G - - MR 30 29 3 32 3 7 38 105 125 -7.907 -0.251 -2.682 -0.580 -1.609 1.324 -0.999 D 31 29 3 32 3 4 36 103 124 -6.390 -1.568 -0.620 IR 32 32 3 32 3 7 39 106 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 88 - g - - MR 33 32 3 35 3 7 38 104 124 -7.686 -0.030 -6.003 -0.143 -1.067 0.929 -0.487 D 34 32 3 35 3 4 35 103 123 -7.293 -0.631 -1.523 IR 35 35 3 35 3 7 38 105 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 87 - A - - MR 36 35 3 38 3 7 37 103 123 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 37 35 3 38 3 3 33 101 122 -6.390 -1.568 -0.620 IR 38 38 3 38 3 6 37 104 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 86 - A - - MR 39 38 3 41 3 7 36 102 122 -7.907 -0.026 -6.225 1.405 -1.438 -1.160 -0.904 D 40 38 3 41 3 3 32 100 121 -6.390 -1.568 -0.620 IR 41 41 3 41 3 6 36 103 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 85 - C - - MR 42 41 3 44 3 6 35 101 121 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 43 41 3 44 3 3 32 99 120 -6.390 -1.568 -0.620 IR 44 44 3 44 3 5 35 102 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 84 - C - - MR 45 44 3 47 3 6 34 100 120 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 46 44 3 47 3 2 31 98 119 -6.390 -1.568 -0.620 IR 47 47 3 47 3 5 34 101 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 83 - u - - MR 48 47 3 50 3 5 33 99 119 -7.907 -0.026 -6.225 -0.342 0.262 -1.069 0.619 D 49 47 3 50 3 2 30 97 118 -6.390 -1.568 -0.620 IR 50 50 3 50 3 5 33 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 82 - C - - MR 51 50 3 53 3 4 32 98 118 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 52 50 3 53 3 2 30 96 117 -6.390 -1.568 -0.620 IR 53 53 3 53 3 4 32 99 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 81 - C - - MR 54 53 3 56 3 3 31 97 117 -7.907 -0.026 -6.225 -0.675 1.138 -1.435 -0.317 D 55 53 3 56 3 1 29 96 116 -6.390 -1.568 -0.620 IR 56 56 3 56 3 3 31 98 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 80 - U - - MR 57 56 3 59 2 2 30 96 116 -7.752 -0.007 -0.657 -0.818 -1.329 1.263 D 58 56 3 59 2 1 29 95 116 -4.432 -0.068 IR 59 59 3 59 2 2 30 97 117 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 118 61 1 29 95 115 [ BEGR 67 ] - - - - - - S 61 60 1 62 3 0 0 32 51 -7.480 -0.029 -6.134 IL 62 62 2 62 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 62 - G - - - ML 63 62 2 65 5 1 1 32 51 -6.680 -0.052 -6.496 -6.708 -7.600 -0.580 -1.609 1.324 -0.999 D 64 62 2 65 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 65 65 3 65 5 1 1 33 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 69 ] 63 79 C G - - MP 66 65 3 70 6 2 2 31 50 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.673 -3.468 -3.497 0.197 -2.449 -4.017 3.137 -3.160 -3.530 0.633 -3.870 -1.402 1.134 -3.789 -0.147 -2.404 ML 67 65 3 70 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 70 ] 64 78 C G - - MP 72 71 6 76 6 2 2 29 48 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.673 -3.468 -3.497 0.197 -2.449 -4.017 3.137 -3.160 -3.530 0.633 -3.870 -1.402 1.134 -3.789 -0.147 -2.404 ML 73 71 6 76 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 71 ] 65 77 G C - - MP 78 77 6 82 6 2 2 27 46 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.823 -2.666 -3.879 0.776 -3.939 -4.294 0.489 -4.021 -3.662 3.304 -4.073 -0.351 0.067 -3.849 -1.509 -2.769 ML 79 77 6 82 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 72 ] 66 76 a u - - MP 84 83 6 88 6 2 2 25 44 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 85 83 6 88 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 73 ] 67 75 a u - - MP 90 89 6 94 6 2 2 23 42 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 91 89 6 94 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 74 ] 68 74 G C - - MP 96 95 6 100 4 2 2 21 40 -6.418 -6.625 -0.077 -5.039 -3.823 -2.666 -3.879 0.776 -3.939 -4.294 0.489 -4.021 -3.662 3.304 -4.073 -0.351 0.067 -3.849 -1.509 -2.769 ML 97 95 6 100 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 69 - C - - - ML 102 101 6 104 3 1 1 18 37 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 103 101 6 104 3 0 0 17 36 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 70 - U - - - ML 105 104 3 107 3 1 1 17 35 -7.480 -0.029 -6.134 -0.657 -0.818 -1.329 1.263 D 106 104 3 107 3 0 0 16 35 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 71 - C - - - ML 108 107 3 110 3 1 1 15 34 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 109 107 3 110 3 0 0 15 33 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 72 - A - - - ML 111 110 3 113 3 1 1 13 32 -7.480 -0.029 -6.134 1.405 -1.438 -1.160 -0.904 D 112 110 3 113 3 0 0 13 32 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 73 - G - - - ML 114 113 3 116 2 1 1 1 1 * 0.000 -0.580 -1.609 1.324 -0.999 D 115 113 3 116 2 0 0 0 0 * 0.000 IL 116 116 3 116 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 117 116 3 -1 0 0 0 0 0 [ BEGL 21 ] - - - - - - S 118 60 1 119 4 0 15 76 96 -0.053 -6.590 -5.998 -6.638 [ MATP 22 ] 2 61 u a - - MP 119 118 1 123 6 2 18 76 96 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.387 -3.146 -3.302 0.487 -2.442 -3.929 1.860 -3.069 -3.319 0.934 -3.725 -1.056 2.703 -3.556 -0.138 -2.207 ML 120 118 1 123 6 1 11 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 1 123 6 1 11 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 1 123 6 0 7 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 13 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 13 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 3 60 u g - - MP 125 124 6 129 6 2 17 74 94 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.252 -3.113 -3.136 0.465 -2.199 -3.704 2.059 -2.871 -3.171 0.838 -3.551 -1.130 1.357 -3.404 2.123 -2.085 ML 126 124 6 129 6 1 11 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 11 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 6 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 12 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 13 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 4 59 g u - - MP 131 130 6 135 6 2 16 72 92 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.089 -2.130 -3.203 1.391 -3.477 -4.265 0.805 -3.307 -3.039 2.056 -3.541 2.145 0.441 -3.550 -1.130 -2.040 ML 132 130 6 135 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 10 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 6 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 12 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 12 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 5 58 G C - - MP 137 136 6 141 6 2 15 70 90 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.823 -2.666 -3.879 0.776 -3.939 -4.294 0.489 -4.021 -3.662 3.304 -4.073 -0.351 0.067 -3.849 -1.509 -2.769 ML 138 136 6 141 6 1 10 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 10 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 6 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 12 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 6 57 u a - - MP 143 142 6 147 6 2 14 68 88 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.387 -3.146 -3.302 0.487 -2.442 -3.929 1.860 -3.069 -3.319 0.934 -3.725 -1.056 2.703 -3.556 -0.138 -2.207 ML 144 142 6 147 6 1 10 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 9 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 6 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 11 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 11 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 7 56 a u - - MP 149 148 6 153 6 2 12 66 86 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 150 148 6 153 6 1 9 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 8 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 5 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 10 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 10 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 8 55 u a - - MP 155 154 6 159 6 2 10 64 84 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.387 -3.146 -3.302 0.487 -2.442 -3.929 1.860 -3.069 -3.319 0.934 -3.725 -1.056 2.703 -3.556 -0.138 -2.207 ML 156 154 6 159 6 1 8 63 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 7 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 5 61 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 9 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 9 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 9 54 G C - - MP 161 160 6 165 4 2 8 62 82 -6.418 -6.625 -0.077 -5.039 -3.823 -2.666 -3.879 0.776 -3.939 -4.294 0.489 -4.021 -3.662 3.304 -4.073 -0.351 0.067 -3.849 -1.509 -2.769 ML 162 160 6 165 4 1 7 62 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 6 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 5 61 81 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 8 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 10 - U - - - ML 167 166 6 169 3 1 6 60 80 -7.480 -0.029 -6.134 -0.657 -0.818 -1.329 1.263 D 168 166 6 169 3 0 4 59 78 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 11 - A - - - ML 170 169 3 172 2 1 5 59 79 -7.752 -0.007 1.405 -1.438 -1.160 -0.904 D 171 169 3 172 2 0 4 58 78 -8.445 -0.004 IL 172 172 3 172 2 1 5 60 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 32 ] - - - - - - B 173 172 3 174 236 0 4 58 78 [ BEGL 33 ] - - - - - - S 174 173 1 175 4 0 0 35 54 -0.053 -6.590 -5.998 -6.638 [ MATP 34 ] 12 31 a u - - MP 175 174 1 179 6 2 2 35 54 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 176 174 1 179 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 177 174 1 179 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 178 174 1 179 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 179 179 5 179 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 180 180 6 180 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 13 30 G C - - MP 181 180 6 185 6 2 2 33 52 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.823 -2.666 -3.879 0.776 -3.939 -4.294 0.489 -4.021 -3.662 3.304 -4.073 -0.351 0.067 -3.849 -1.509 -2.769 ML 182 180 6 185 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 183 180 6 185 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 184 180 6 185 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 185 185 5 185 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 186 186 6 186 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 14 29 C G - - MP 187 186 6 191 6 2 2 31 50 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.673 -3.468 -3.497 0.197 -2.449 -4.017 3.137 -3.160 -3.530 0.633 -3.870 -1.402 1.134 -3.789 -0.147 -2.404 ML 188 186 6 191 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 189 186 6 191 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 190 186 6 191 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 191 191 5 191 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 192 192 6 192 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 15 28 u a - - MP 193 192 6 197 6 2 2 29 48 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.387 -3.146 -3.302 0.487 -2.442 -3.929 1.860 -3.069 -3.319 0.934 -3.725 -1.056 2.703 -3.556 -0.138 -2.207 ML 194 192 6 197 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 195 192 6 197 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 196 192 6 197 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 197 197 5 197 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 198 198 6 198 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 16 27 a u - - MP 199 198 6 203 6 2 2 27 46 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 200 198 6 203 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 201 198 6 203 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 202 198 6 203 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 203 203 5 203 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 204 204 6 204 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 17 26 C G - - MP 205 204 6 209 4 2 2 25 44 -6.418 -6.625 -0.077 -5.039 -3.673 -3.468 -3.497 0.197 -2.449 -4.017 3.137 -3.160 -3.530 0.633 -3.870 -1.402 1.134 -3.789 -0.147 -2.404 ML 206 204 6 209 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 207 204 6 209 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 208 204 6 209 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 209 209 5 209 4 1 1 26 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 210 210 6 210 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 18 - a - - - ML 211 210 6 213 3 1 1 22 40 -7.480 -0.029 -6.134 0.489 -0.643 -0.801 0.467 D 212 210 6 213 3 0 0 20 39 -6.174 -1.687 -0.566 IL 213 213 3 213 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 19 - a - - - ML 214 213 3 216 3 1 1 20 39 -7.480 -0.029 -6.134 0.489 -0.643 -0.801 0.467 D 215 213 3 216 3 0 0 19 38 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 20 - C - - - ML 217 216 3 219 3 1 1 19 38 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 218 216 3 219 3 0 0 18 37 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 21 - U - - - ML 220 219 3 222 3 1 1 18 37 -7.480 -0.029 -6.134 -0.657 -0.818 -1.329 1.263 D 221 219 3 222 3 0 0 17 36 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 22 - U - - - ML 223 222 3 225 3 1 1 17 35 -7.480 -0.029 -6.134 -0.657 -0.818 -1.329 1.263 D 224 222 3 225 3 0 0 16 35 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 23 - C - - - ML 226 225 3 228 3 1 1 15 34 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 227 225 3 228 3 0 0 15 33 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 24 - C - - - ML 229 228 3 231 3 1 1 13 32 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 230 228 3 231 3 0 0 13 32 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - a - - - ML 232 231 3 234 2 1 1 1 1 * 0.000 0.602 -1.014 0.308 -0.418 D 233 231 3 234 2 0 0 0 0 * 0.000 IL 234 234 3 234 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 235 234 3 -1 0 0 0 0 0 [ BEGR 49 ] - - - - - - S 236 173 1 237 3 0 0 37 56 -7.480 -0.029 -6.134 IL 237 237 2 237 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 32 - G - - - ML 238 237 2 240 3 1 1 37 56 -7.480 -0.029 -6.134 -0.580 -1.609 1.324 -0.999 D 239 237 2 240 3 0 0 35 55 -6.174 -1.687 -0.566 IL 240 240 3 240 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 33 - C - - - ML 241 240 3 243 3 1 1 36 55 -7.480 -0.029 -6.134 -0.675 1.138 -1.435 -0.317 D 242 240 3 243 3 0 0 34 53 -6.174 -1.687 -0.566 IL 243 243 3 243 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 34 - G - - - ML 244 243 3 246 3 1 1 34 53 -7.480 -0.029 -6.134 -0.580 -1.609 1.324 -0.999 D 245 243 3 246 3 0 0 33 52 -6.174 -1.687 -0.566 IL 246 246 3 246 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 35 - U - - - ML 247 246 3 249 5 1 1 33 52 -6.680 -0.052 -6.496 -6.708 -7.600 -0.657 -0.818 -1.329 1.263 D 248 246 3 249 5 0 0 32 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 249 249 3 249 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 36 53 C G - - MP 250 249 3 254 6 2 2 32 51 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.673 -3.468 -3.497 0.197 -2.449 -4.017 3.137 -3.160 -3.530 0.633 -3.870 -1.402 1.134 -3.789 -0.147 -2.404 ML 251 249 3 254 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 252 249 3 254 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 253 249 3 254 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 254 254 5 254 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 255 255 6 255 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 37 52 a u - - MP 256 255 6 260 6 2 2 30 49 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 257 255 6 260 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 258 255 6 260 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 259 255 6 260 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 260 260 5 260 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 261 261 6 261 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 38 51 c g - - MP 262 261 6 266 6 2 2 28 47 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.254 -3.097 -3.160 0.547 -2.241 -3.752 2.508 -2.906 -3.192 0.964 -3.588 -1.081 2.038 -3.392 0.064 -2.082 ML 263 261 6 266 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 264 261 6 266 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 265 261 6 266 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 266 266 5 266 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 267 267 6 267 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 39 50 a u - - MP 268 267 6 272 6 2 2 26 45 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -3.166 -2.376 -3.215 2.638 -3.231 -4.269 1.042 -3.278 -3.142 1.790 -3.653 0.023 0.610 -3.564 -0.909 -2.094 ML 269 267 6 272 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 270 267 6 272 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 271 267 6 272 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 272 272 5 272 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 273 273 6 273 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 40 49 c g - - MP 274 273 6 278 6 2 2 24 43 -8.928 -8.867 -0.024 -7.643 -7.923 -8.318 -2.988 -2.602 -3.006 1.626 -2.503 -3.758 2.190 -2.971 -3.027 1.569 -3.487 -0.465 1.274 -3.188 -0.205 -1.947 ML 275 273 6 278 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 276 273 6 278 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 277 273 6 278 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 278 278 5 278 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 279 279 6 279 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 41 48 c g - - MP 280 279 6 284 4 2 2 22 41 -6.418 -6.625 -0.370 -2.292 -3.254 -3.097 -3.160 0.547 -2.241 -3.752 2.508 -2.906 -3.192 0.964 -3.588 -1.081 2.038 -3.392 0.064 -2.082 ML 281 279 6 284 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 282 279 6 284 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 283 279 6 284 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 284 284 5 284 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 285 285 6 285 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 42 - A - - - ML 286 285 6 288 3 1 1 19 38 -7.235 -0.034 -5.889 1.129 -1.010 -0.757 -0.466 D 287 285 6 288 3 0 0 18 37 -7.198 -0.597 -1.590 IL 288 288 3 288 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 43 - U - - - ML 289 288 3 291 3 1 1 18 37 -7.480 -0.029 -6.134 -0.657 -0.818 -1.329 1.263 D 290 288 3 291 3 0 0 17 36 -6.174 -1.687 -0.566 IL 291 291 3 291 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 44 - u - - - ML 292 291 3 294 3 1 1 17 35 -7.480 -0.029 -6.134 -0.342 0.262 -1.069 0.619 D 293 291 3 294 3 0 0 16 35 -6.174 -1.687 -0.566 IL 294 294 3 294 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 45 - A - - - ML 295 294 3 297 3 1 1 15 34 -7.480 -0.029 -6.134 1.405 -1.438 -1.160 -0.904 D 296 294 3 297 3 0 0 15 33 -6.174 -1.687 -0.566 IL 297 297 3 297 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 46 - A - - - ML 298 297 3 300 3 1 1 13 32 -7.480 -0.029 -6.134 1.405 -1.438 -1.160 -0.904 D 299 297 3 300 3 0 0 13 32 -6.174 -1.687 -0.566 IL 300 300 3 300 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 47 - G - - - ML 301 300 3 303 2 1 1 1 1 * 0.000 -0.580 -1.609 1.324 -0.999 D 302 300 3 303 2 0 0 0 0 * 0.000 IL 303 303 3 303 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 304 303 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TLS-PK1 ACC RF01075 DESC Pseudoknot of tRNA-like structure LENG 97 MAXL 197 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 11:23:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01075/CM NSEQ 2 EFFN 1.457031 CKSUM 2583789186 STATS LOCAL MSV -8.9524 0.71854 STATS LOCAL VITERBI -10.2083 0.71854 STATS LOCAL FORWARD -3.3743 0.71854 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39173 1.37163 1.35849 1.42457 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 0.00000 * 1 0.26235 2.76493 2.53645 2.42327 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 2 2.50556 1.56994 2.18756 0.51396 2 U - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 3 2.51412 1.36901 2.23881 0.58318 3 U - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 4 1.73448 2.41751 0.45243 2.31991 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 5 2.28782 2.73710 0.26683 2.68892 5 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 6 2.50015 1.57009 2.18581 0.51498 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 7 0.59354 2.25070 1.46189 2.20265 7 A - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 8 2.49910 1.57012 2.18547 0.51518 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 9 2.28620 2.73565 0.26736 2.68675 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 10 2.17685 2.21775 2.67110 0.34450 10 U - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 11 0.26235 2.76493 2.53645 2.42327 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 12 0.59269 2.25237 1.46178 2.20554 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 13 2.28965 2.73874 0.26624 2.69137 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 14 2.73847 0.38773 2.44416 1.77235 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 15 2.50090 1.57007 2.18606 0.51484 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 16 0.59346 2.25086 1.46188 2.20293 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 17 2.73527 0.38830 2.44294 1.77189 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 18 1.02297 1.91288 2.04822 1.01099 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 19 1.02297 1.91288 2.04822 1.01099 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 20 2.27869 0.36405 2.83591 1.93753 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 21 2.17685 2.21775 2.67110 0.34450 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 22 2.17685 2.21775 2.67110 0.34450 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 23 2.27869 0.36405 2.83591 1.93753 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 24 2.27869 0.36405 2.83591 1.93753 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 25 0.92444 2.24329 1.08759 1.83190 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 26 2.04402 2.60776 0.33694 2.49080 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 27 2.43418 1.70455 2.06735 0.50426 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 28 0.58790 2.35975 1.40651 2.25316 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 29 2.04346 2.60716 0.33720 2.48996 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 30 2.90124 0.31244 2.56228 1.99320 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 31 2.42664 1.70440 2.06528 0.50583 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 32 2.19803 2.99562 0.27133 2.56907 32 G - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 33 2.27869 0.36405 2.83591 1.93753 33 C - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 34 2.19803 2.99562 0.27133 2.56907 34 G - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 35 2.17685 2.21775 2.67110 0.34450 35 U - - , 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 36 2.73578 0.38821 2.44313 1.77196 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 37 0.59340 2.25098 1.46187 2.20313 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 38 2.31825 0.91281 2.02180 1.00037 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 39 0.59346 2.25087 1.46188 2.20294 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 40 1.42174 1.10881 1.55457 1.52568 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 41 2.31734 0.91302 2.02154 1.00048 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.31735 3.67531 1.40005 1.46634 0.26236 1.09861 0.40547 42 0.45537 2.30259 2.11644 1.92877 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06730 3.42525 3.42525 1.46634 0.26236 0.18693 1.76904 43 2.17685 2.21775 2.67110 0.34450 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 44 1.77211 1.11850 2.29783 0.90936 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 45 0.26235 2.76493 2.53645 2.42327 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 46 0.26235 2.76493 2.53645 2.42327 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 47 2.19803 2.99562 0.27133 2.56907 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 48 1.15617 2.18314 0.80285 2.08287 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 49 1.76687 1.72195 0.99071 1.27618 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 50 2.43448 1.70456 2.06743 0.50419 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 51 1.15617 2.18312 0.80286 2.08285 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 52 2.43303 1.70453 2.06703 0.50449 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 53 2.04195 2.60554 0.33791 2.48772 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 54 2.90605 0.31172 2.56409 1.99415 54 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 55 0.58791 2.35973 1.40651 2.25313 55 A - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 56 2.43410 1.70455 2.06733 0.50427 56 U - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 57 0.58787 2.35983 1.40650 2.25329 57 A - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 58 2.90658 0.31164 2.56429 1.99425 58 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 59 2.53794 1.52241 2.22424 0.51981 59 U - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 60 1.84342 2.40503 0.43494 2.26183 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 61 0.58905 2.35694 1.40680 2.24895 61 A - - ) 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 62 2.19803 2.99562 0.27133 2.56907 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 63 2.73922 0.38759 2.44445 1.77246 63 C - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 64 2.73916 0.38760 2.44442 1.77245 64 C - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 65 2.28858 2.73778 0.26659 2.68993 65 G - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 66 0.59330 2.25118 1.46186 2.20347 66 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 67 0.59339 2.25100 1.46187 2.20316 67 A - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 68 2.28718 2.73653 0.26704 2.68806 68 G - - < 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 69 2.27869 0.36405 2.83591 1.93753 69 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 70 2.17685 2.21775 2.67110 0.34450 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 71 2.27869 0.36405 2.83591 1.93753 71 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 72 0.26235 2.76493 2.53645 2.42327 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 73 2.19803 2.99562 0.27133 2.56907 73 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 74 2.90893 0.31128 2.56517 1.99471 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 75 2.43584 1.70459 2.06780 0.50391 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 76 2.43650 1.70460 2.06798 0.50377 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 77 2.91245 0.31075 2.56650 1.99540 77 C - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 78 2.04601 2.60989 0.33602 2.49377 78 G - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 79 2.04611 2.61000 0.33597 2.49391 79 G - - > 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 80 2.17685 2.21775 2.67110 0.34450 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 81 2.27869 0.36405 2.83591 1.93753 81 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 82 2.27869 0.36405 2.83591 1.93753 82 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 83 1.77211 1.11850 2.29783 0.90936 83 u - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 84 2.27869 0.36405 2.83591 1.93753 84 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 85 2.27869 0.36405 2.83591 1.93753 85 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 86 0.26235 2.76493 2.53645 2.42327 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 87 0.26235 2.76493 2.53645 2.42327 87 A - - : 1.38629 1.38629 1.38629 1.38629 0.31735 3.67531 1.40005 1.46634 0.26236 1.09861 0.40547 88 1.70450 2.39802 0.52932 1.97882 88 G - - : 1.38629 1.38629 1.38629 1.38629 0.06730 3.42525 3.42525 1.46634 0.26236 0.18693 1.76904 89 2.19803 2.99562 0.27133 2.56907 89 G - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 90 2.19803 2.99562 0.27133 2.56907 90 G - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 91 0.26235 2.76493 2.53645 2.42327 91 A - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 92 0.26235 2.76493 2.53645 2.42327 92 A - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 93 2.19803 2.99562 0.27133 2.56907 93 G - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 94 0.26235 2.76493 2.53645 2.42327 94 A - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 95 2.27869 0.36405 2.83591 1.93753 95 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 96 2.27869 0.36405 2.83591 1.93753 96 C - - : 1.38629 1.38629 1.38629 1.38629 0.05201 3.67531 3.67531 1.46634 0.26236 1.09861 0.40547 97 0.26235 2.76493 2.53645 2.42327 97 A - - : 1.38629 1.38629 1.38629 1.38629 0.02634 3.64964 * 1.46634 0.26236 0.00000 * //