INFERNAL1/a [1.1.4 | Dec 2020] NAME mini-ykkC ACC RF01068 DESC Guanidine-II riboswitch STATES 153 NODES 41 CLEN 48 W 78 ALPH RNA RF no CONS yes MAP yes DATE Tue Apr 8 11:04:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 72 EFFN 72.000000 CKSUM 3079203269 NULL 0.000 0.000 0.000 0.000 GA 32.00 TC 32.00 NC 31.90 EFP7GF -15.8834 0.73256 ECMLC 0.48784 -13.87143 0.37209 1600000 1249913 0.000960 ECMGC 0.37714 -21.92290 -6.34936 1600000 142188 0.002813 ECMLI 0.53606 -11.16592 1.13779 1600000 878218 0.001366 ECMGI 0.39174 -20.07141 -5.42704 1600000 124019 0.003225 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 78 114 -10.065 -20.535 -0.001 IL 1 1 2 1 3 1 14 90 133 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 13 80 116 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 66 0 12 78 115 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 30 49 -0.032 -10.300 -9.707 -5.659 [ MATP 3 ] 1 21 c g - - MP 5 4 1 9 6 2 2 31 49 -12.184 -12.123 -0.002 -10.900 -11.179 -11.574 -1.282 -1.873 0.511 -0.898 0.259 -2.508 1.662 -4.102 -2.190 1.558 -4.392 1.003 1.571 -3.892 -2.011 -1.961 ML 6 4 1 9 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 27 45 -10.932 -9.631 -5.428 -6.110 -6.127 -0.080 IL 9 9 5 9 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 20 c g - - MP 11 10 6 15 6 2 2 29 47 -12.184 -12.123 -0.016 -6.673 -11.179 -11.574 -3.546 0.269 -3.744 0.372 -0.112 -0.572 1.987 -4.096 -3.812 1.608 -1.043 0.034 0.791 -2.126 -0.308 -1.621 ML 12 10 6 15 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 26 45 -10.932 -9.631 -0.411 -6.110 -6.127 -2.203 IL 15 15 5 15 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 19 g c - - MP 17 16 6 21 6 2 2 27 45 -12.197 -12.137 -0.002 -10.913 -11.193 -11.588 -4.167 -1.975 -4.345 0.679 -0.838 -5.191 1.914 -4.621 -4.402 2.415 -2.231 -1.652 1.525 -4.483 -0.946 -1.792 ML 18 16 6 21 6 1 1 25 43 -7.279 -7.625 -2.339 -0.407 -7.475 -5.004 -0.551 -0.738 -1.211 1.193 MR 19 16 6 21 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 18 c g - - MP 23 22 6 27 6 2 2 25 43 -12.197 -5.178 -0.043 -10.913 -11.193 -11.588 -5.409 -2.076 -5.528 0.025 -1.661 -2.689 2.794 -5.481 -5.507 1.358 -6.053 -0.118 1.681 -5.685 -1.069 -4.474 ML 24 22 6 27 6 1 1 23 42 -7.279 -7.625 -0.499 -2.034 -7.475 -5.004 -0.549 1.037 -1.297 -0.222 MR 25 22 6 27 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 24 42 -3.665 -0.187 -7.177 -5.344 -6.450 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 16 g c - - MP 29 28 6 33 6 2 2 22 41 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.310 -4.986 -6.140 1.697 -7.050 -6.753 2.016 -6.747 -6.538 2.800 -6.804 -0.474 -0.280 -6.013 -4.189 -5.083 ML 30 28 6 33 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 15 g c - - MP 35 34 6 39 6 2 2 20 39 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.270 -4.909 -6.090 2.462 -7.219 -6.689 0.299 -6.776 -6.524 2.823 -6.772 0.442 -1.216 -5.947 -4.294 -2.170 ML 36 34 6 39 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 14 G C - - MP 41 40 6 45 6 2 2 18 37 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -9.866 -6.774 -11.341 -1.174 -11.627 -8.032 -6.058 -11.111 -8.123 3.931 -8.349 -2.015 -6.384 -8.461 -8.448 -10.133 ML 42 40 6 45 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 13 G C - - MP 47 46 6 51 4 2 2 16 35 -11.333 -11.540 -0.002 -9.955 -10.116 -6.775 -12.295 -4.238 -11.732 -7.946 -6.063 -11.803 -8.141 3.987 -8.337 -4.701 -6.428 -8.410 -8.502 -11.319 ML 48 46 6 51 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 50 46 6 51 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 51 51 5 51 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 52 52 6 52 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 53 52 6 55 3 1 1 13 32 -12.248 -0.001 -10.902 1.995 -8.360 -7.617 -7.745 D 54 52 6 55 3 0 0 16 34 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 56 55 3 58 3 1 1 12 30 -12.248 -0.001 -10.902 -7.813 1.994 -8.299 -6.806 D 57 55 3 58 3 0 0 15 33 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 59 58 3 61 3 1 1 10 29 -12.248 -0.001 -10.902 -6.855 -8.624 1.994 -7.616 D 60 58 3 61 3 0 0 13 32 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - A - - - ML 62 61 3 64 2 1 1 1 1 * 0.000 1.822 -6.904 -1.162 -6.781 D 63 61 3 64 2 0 0 0 0 * 0.000 IL 64 64 3 64 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 15 ] - - - - - - E 65 64 3 -1 0 0 0 0 0 [ BEGR 16 ] - - - - - - S 66 3 1 67 3 0 2 58 95 -12.248 -0.001 -10.902 IL 67 67 2 67 3 1 1 60 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - C - - - ML 68 67 2 70 3 1 3 58 95 -12.248 -0.001 -10.902 -0.487 1.087 -1.441 -0.333 D 69 67 2 70 3 0 0 56 92 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 59 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - u - - - ML 71 70 3 73 3 1 2 57 94 -12.248 -0.001 -10.902 -0.260 -0.207 0.047 0.340 D 72 70 3 73 3 0 0 55 91 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 58 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - c - - - ML 74 73 3 76 3 1 2 56 93 -12.248 -0.001 -10.902 -1.821 0.914 -0.202 -0.055 D 75 73 3 76 3 0 0 54 90 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 57 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - a - - - ML 77 76 3 79 3 1 2 55 92 -12.248 -0.001 -10.902 0.485 -0.047 -0.968 0.165 D 78 76 3 79 3 0 0 53 89 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 56 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - c - - - ML 80 79 3 82 3 1 1 54 91 -12.248 -0.001 -10.902 0.042 0.502 -0.778 -0.043 D 81 79 3 82 3 0 0 52 88 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 55 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - c - - - ML 83 82 3 85 3 1 1 53 90 -12.248 -0.001 -10.902 -0.510 0.449 -0.221 0.104 D 84 82 3 85 3 0 0 51 87 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 54 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - g - - - ML 86 85 3 88 3 1 1 52 89 -12.248 -0.001 -10.902 -0.381 0.134 0.249 -0.079 D 87 85 3 88 3 0 0 50 86 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 53 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - a - - - ML 89 88 3 91 3 1 1 51 88 -12.248 -0.001 -10.902 0.310 -0.117 -0.327 0.059 D 90 88 3 91 3 0 0 49 85 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 52 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - u - - - ML 92 91 3 94 3 1 1 50 87 -12.248 -0.001 -10.902 0.317 -1.209 -0.471 0.679 D 93 91 3 94 3 0 0 48 84 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 51 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - u - - - ML 95 94 3 97 3 1 1 49 86 -12.248 -0.036 -5.364 0.037 0.262 -1.367 0.472 D 96 94 3 97 3 0 0 47 83 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 50 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - u - - - ML 98 97 3 100 3 1 1 48 85 -12.213 -0.059 -4.649 -0.019 0.095 -0.580 0.351 D 99 97 3 100 3 0 0 43 79 -8.574 -4.087 -0.091 IL 100 100 3 100 3 1 1 49 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - a - - - ML 101 100 3 103 3 1 1 48 84 -12.155 -0.041 -5.157 0.684 -0.168 -0.782 -0.117 D 102 100 3 103 3 0 0 41 77 -9.782 -5.295 -0.039 IL 103 103 3 103 3 1 1 48 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - c - - - ML 104 103 3 106 3 1 1 47 83 -12.115 -0.396 -2.061 0.071 0.352 -0.465 -0.075 D 105 103 3 106 3 0 0 39 75 -10.247 -5.760 -0.028 IL 106 106 3 106 3 1 1 48 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - c - - - ML 107 106 3 109 5 1 1 46 82 -0.697 -1.808 -10.484 -3.372 -11.588 -0.569 0.656 -0.165 -0.221 D 108 106 3 109 5 0 0 33 69 -9.960 -0.894 -9.221 -7.596 -1.139 IL 109 109 3 109 5 1 1 46 82 -0.736 -1.330 -9.831 -11.664 -10.937 0.000 0.000 0.000 0.000 [ MATP 31 ] 42 55 c g - - MP 110 109 3 114 6 2 2 24 43 -11.898 -11.837 -0.003 -10.614 -10.894 -11.289 -1.366 -3.669 -3.659 0.280 0.775 -4.511 2.514 -3.988 -3.723 1.310 -0.895 -2.323 0.531 -1.195 0.272 -1.617 ML 111 109 3 114 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 23 42 -9.841 -8.570 -0.142 -8.548 -3.682 -6.762 1.917 -4.026 -3.518 -3.726 D 113 109 3 114 6 0 0 22 41 -13.385 -12.084 -0.067 -8.563 -8.580 -4.656 IL 114 114 5 114 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 43 54 g c - - MP 116 115 6 120 6 2 2 22 41 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.520 -5.246 -6.372 -0.458 -7.003 -7.019 2.442 -6.847 -6.687 2.980 -6.989 0.133 -0.583 -6.289 -4.222 -5.278 ML 117 115 6 120 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 44 53 G C - - MP 122 121 6 126 6 2 2 20 39 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -9.157 -6.743 -9.769 0.607 -11.055 -8.340 -5.853 -9.806 -8.042 3.711 -8.367 0.401 -6.077 -8.577 -8.056 -8.461 ML 123 121 6 126 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 45 52 G C - - MP 128 127 6 132 6 2 2 18 37 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -10.064 -6.774 -12.060 -4.216 -11.735 -7.963 -6.071 -11.649 -8.137 3.960 -8.339 -1.586 -6.425 -8.420 -8.505 -11.004 ML 129 127 6 132 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 46 51 G C - - MP 134 133 6 138 4 2 2 16 35 -11.333 -11.540 -0.002 -9.955 -10.116 -6.775 -12.295 -4.238 -11.732 -7.946 -6.063 -11.803 -8.141 3.987 -8.337 -4.701 -6.428 -8.410 -8.502 -11.319 ML 135 133 6 138 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - A - - - ML 140 139 6 142 3 1 1 13 32 -12.248 -0.001 -10.902 1.995 -8.360 -7.617 -7.745 D 141 139 6 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - C - - - ML 143 142 3 145 3 1 1 12 30 -12.248 -0.001 -10.902 -6.353 1.941 -3.788 -3.708 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - G - - - ML 146 145 3 148 3 1 1 10 29 -12.248 -0.001 -10.902 -6.855 -8.624 1.994 -7.616 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - A - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 1.249 -7.050 0.685 -6.946 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mini-ykkC ACC RF01068 DESC Guanidine-II riboswitch LENG 48 MAXL 103 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Apr 8 11:04:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 72 EFFN 72.000000 CKSUM 3079203269 STATS LOCAL MSV -8.4971 0.73256 STATS LOCAL VITERBI -9.0959 0.73256 STATS LOCAL FORWARD -3.5583 0.73256 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60212 1.09951 1.13852 1.92963 1.38629 1.38629 1.38629 1.38629 0.02271 6.60935 3.85837 1.46634 0.26236 0.00000 * 1 1.79899 1.24771 1.12111 1.50753 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.00275 6.58940 6.58940 1.46634 0.26236 2.87119 0.05830 2 1.79326 1.04690 1.24064 1.64320 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.00275 6.58940 6.58940 1.46634 0.26236 0.12021 2.17804 3 2.09509 1.29645 1.00327 1.44069 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 4 2.50042 0.76608 1.51826 1.45233 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 5 1.57641 1.36973 0.73246 2.84073 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 6 1.05558 2.54167 0.63913 3.08948 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 7 3.54238 6.43306 0.03278 6.38004 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 8 5.39806 6.45898 0.00771 6.44765 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 9 0.00321 7.18068 6.66596 6.75456 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 10 6.80188 0.00415 7.13896 6.10360 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 11 6.13757 7.36433 0.00408 6.66550 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 12 0.12336 6.17209 2.19196 6.08639 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 13 6.44391 0.00955 6.37841 5.08033 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 14 6.39612 0.04821 6.35120 3.13137 14 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 15 3.52589 0.80849 2.50313 0.81370 15 c - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 16 2.91768 0.82494 1.35665 1.38566 16 c - - > 1.38629 1.38629 1.38629 1.38629 0.04233 3.49424 4.50273 0.08650 2.49055 1.09861 0.40547 17 1.49993 1.68218 0.76520 2.07428 18 g - - > 1.38629 1.38629 1.38629 1.38629 0.00273 6.59957 6.59957 1.46634 0.26236 2.32439 0.10297 18 1.50753 1.04004 1.25758 1.96070 19 c - - > 1.38629 1.38629 1.38629 1.38629 0.02293 6.59957 3.84859 1.46634 0.26236 0.21777 1.63124 19 1.73734 1.13335 1.09956 1.77762 20 g - - > 1.38629 1.38629 1.38629 1.38629 0.00275 6.58940 6.58940 1.46634 0.26236 2.87119 0.05830 20 1.20450 1.53130 1.18663 1.72230 21 g - - > 1.38629 1.38629 1.38629 1.38629 0.00275 6.58940 6.58940 1.46634 0.26236 0.12021 2.17804 21 1.72369 0.63290 2.38486 1.61725 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 22 1.56655 1.52986 1.35365 1.15083 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 23 2.64842 0.75242 1.52615 1.42446 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 24 1.04997 1.41904 2.05733 1.27186 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 25 1.35701 1.03822 1.92542 1.41605 26 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 26 1.73952 1.07533 1.53941 1.31414 27 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 27 1.65020 1.29318 1.21404 1.44140 28 g - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 28 1.17152 1.46766 1.61318 1.34557 29 a - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 29 1.16657 2.22464 1.71296 0.91597 30 u - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 30 1.36056 1.20494 2.33403 1.05880 31 u - - - 1.38629 1.38629 1.38629 1.38629 0.02670 6.60935 3.68895 1.46634 0.26236 1.09861 0.40547 31 1.39920 1.32023 1.78848 1.14282 32 u - - - 1.38629 1.38629 1.38629 1.38629 0.04279 6.58541 3.20625 1.46634 0.26236 3.02280 0.04989 32 0.91224 1.50285 1.92836 1.46753 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03068 6.54550 3.54799 1.46634 0.26236 3.88967 0.02066 33 1.33716 1.14251 1.70859 1.43855 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.27565 6.51777 1.42943 1.46634 0.26236 4.21848 0.01483 34 1.78073 0.93154 1.50040 1.53946 35 c - - - 1.38629 1.38629 1.38629 1.38629 1.26968 0.47686 2.31924 0.93833 0.49640 0.62677 0.76424 35 2.20185 0.75514 1.58079 1.54344 42 c - - < 1.38629 1.38629 1.38629 1.38629 0.00341 6.37603 6.37603 1.46634 0.26236 0.01279 4.36570 36 3.01214 1.07637 0.57624 3.03711 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 37 2.33897 6.33464 0.10565 6.18457 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 38 5.37166 6.43841 0.00792 6.41024 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 39 5.39060 6.44615 0.00779 6.42999 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 40 0.00321 7.18068 6.66596 6.75456 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 41 5.78956 0.04113 4.01212 3.95615 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 42 6.13757 7.36433 0.00408 6.66550 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 43 0.52052 6.27276 0.91162 6.20089 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 44 6.28281 0.01025 6.27329 5.04469 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 45 6.17518 0.02956 6.20314 3.68783 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 46 5.91107 0.20280 5.97987 1.72416 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 47 3.09526 0.70490 1.06870 2.14453 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.15520 6.60935 1.94906 1.46634 0.26236 1.09861 0.40547 48 1.25879 1.73810 0.83244 2.25225 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.00157 6.45572 * 1.46634 0.26236 0.00000 * //