INFERNAL1/a [1.1.5 | Sep 2023] NAME Guanidine-II ACC RF01068 DESC Guanidine-II riboswitch aptamer (mini-ykkC) STATES 153 NODES 41 CLEN 48 W 72 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 18:53:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01068/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 72 EFFN 72.000000 CKSUM 3079203269 NULL 0.000 0.000 0.000 0.000 GA 32.00 TC 32.00 NC 31.90 EFP7GF -15.7455 0.73285 ECMLC 0.48600 -14.04935 0.24688 1600000 1249242 0.000961 ECMGC 0.37689 -21.96253 -6.38669 1600000 141745 0.002822 ECMLI 0.55513 -10.78438 1.08579 1600000 872842 0.001375 ECMGI 0.39369 -20.04656 -5.47204 1600000 124150 0.003222 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 72 100 -10.065 -20.535 -0.001 IL 1 1 2 1 3 1 14 88 132 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 13 73 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 66 0 12 72 100 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 30 49 -0.035 -10.300 -9.707 -5.507 [ MATP 3 ] 1 21 c g - - MP 5 4 1 9 6 2 2 30 49 -12.181 -12.120 -0.002 -10.896 -11.176 -11.571 -1.181 -1.753 0.510 -0.894 0.138 -2.383 1.784 -4.098 -2.078 1.514 -4.388 1.030 1.451 -3.888 -2.007 -1.873 ML 6 4 1 9 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 27 45 -11.049 -9.747 -5.544 -6.226 -6.244 -0.073 IL 9 9 5 9 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 20 c g - - MP 11 10 6 15 6 2 2 28 47 -12.181 -12.120 -0.018 -6.520 -11.176 -11.571 -3.543 0.375 -3.741 0.468 -0.028 -0.493 1.787 -4.093 -3.809 1.733 -1.333 -0.012 0.898 -2.010 -0.492 -1.518 ML 12 10 6 15 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 26 45 -11.049 -9.747 -0.374 -6.226 -6.244 -2.319 IL 15 15 5 15 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 19 g c - - MP 17 16 6 21 6 2 2 26 45 -12.196 -12.135 -0.002 -10.912 -11.192 -11.587 -4.072 -1.838 -4.255 0.722 -0.690 -5.104 1.955 -4.539 -4.311 2.265 -2.332 -1.555 1.637 -4.396 -0.829 -1.868 ML 18 16 6 21 6 1 1 25 43 -7.361 -7.708 -2.422 -0.381 -7.557 -5.087 -0.622 -0.791 -1.290 1.241 MR 19 16 6 21 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 18 c g - - MP 23 22 6 27 6 2 2 24 43 -12.196 -6.256 -0.021 -10.912 -11.192 -11.587 -5.257 -1.925 -5.387 0.151 -1.515 -2.536 2.787 -5.386 -5.377 1.271 -5.927 -0.141 1.669 -5.542 -0.955 -4.372 ML 24 22 6 27 6 1 1 23 42 -7.361 -7.708 -0.466 -2.116 -7.557 -5.087 -0.633 1.106 -1.389 -0.285 MR 25 22 6 27 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 24 42 -3.132 -0.280 -6.644 -4.811 -5.917 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 16 g c - - MP 29 28 6 33 6 2 2 22 41 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.333 -5.044 -6.171 1.709 -6.908 -6.796 2.164 -6.711 -6.540 2.705 -6.821 -0.712 -0.131 -6.058 -4.092 -5.097 ML 30 28 6 33 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 15 g c - - MP 35 34 6 39 6 2 2 20 39 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.267 -4.907 -6.087 2.392 -7.216 -6.686 0.343 -6.774 -6.522 2.832 -6.770 0.567 -1.118 -5.944 -4.291 -2.033 ML 36 34 6 39 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 14 G C - - MP 41 40 6 45 6 2 2 18 37 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -9.844 -6.774 -11.275 -1.034 -11.614 -8.040 -6.056 -11.060 -8.122 3.925 -8.350 -1.880 -6.378 -8.465 -8.441 -10.059 ML 42 40 6 45 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 13 G C - - MP 47 46 6 51 4 2 2 16 35 -11.333 -11.540 -0.002 -9.955 -10.116 -6.775 -12.295 -4.238 -11.732 -7.946 -6.063 -11.803 -8.141 3.987 -8.336 -4.701 -6.428 -8.410 -8.502 -11.319 ML 48 46 6 51 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 50 46 6 51 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 51 51 5 51 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 52 52 6 52 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 53 52 6 55 3 1 1 13 32 -12.248 -0.001 -10.902 1.995 -8.360 -7.617 -7.745 D 54 52 6 55 3 0 0 16 34 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 56 55 3 58 3 1 1 12 30 -12.248 -0.001 -10.902 -7.813 1.994 -8.299 -6.806 D 57 55 3 58 3 0 0 15 33 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 59 58 3 61 3 1 1 10 29 -12.248 -0.001 -10.902 -6.855 -8.624 1.994 -7.616 D 60 58 3 61 3 0 0 13 32 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - A - - - ML 62 61 3 64 2 1 1 1 1 * 0.000 1.829 -6.914 -1.222 -6.786 D 63 61 3 64 2 0 0 0 0 * 0.000 IL 64 64 3 64 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 15 ] - - - - - - E 65 64 3 -1 0 0 0 0 0 [ BEGR 16 ] - - - - - - S 66 3 1 67 3 0 2 52 80 -12.248 -0.001 -10.902 IL 67 67 2 67 3 1 1 54 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - C - - - ML 68 67 2 70 3 1 3 52 80 -12.248 -0.001 -10.902 -0.438 1.022 -1.291 -0.281 D 69 67 2 70 3 0 0 50 78 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - u - - - ML 71 70 3 73 3 1 2 51 79 -12.248 -0.001 -10.902 -0.145 -0.187 0.016 0.270 D 72 70 3 73 3 0 0 49 77 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 52 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - c - - - ML 74 73 3 76 3 1 2 50 78 -12.248 -0.001 -10.902 -1.732 0.840 -0.198 0.052 D 75 73 3 76 3 0 0 48 76 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 51 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - a - - - ML 77 76 3 79 3 1 2 49 77 -12.248 -0.001 -10.902 0.373 0.031 -1.059 0.267 D 78 76 3 79 3 0 0 47 75 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 50 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - c - - - ML 80 79 3 82 3 1 1 48 76 -12.248 -0.001 -10.902 0.029 0.525 -0.784 -0.059 D 81 79 3 82 3 0 0 46 74 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 49 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - c - - - ML 83 82 3 85 3 1 1 47 75 -12.248 -0.001 -10.902 -0.454 0.424 -0.105 -0.003 D 84 82 3 85 3 0 0 45 73 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 48 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - g - - - ML 86 85 3 88 3 1 1 46 74 -12.248 -0.001 -10.902 -0.331 0.031 0.202 0.046 D 87 85 3 88 3 0 0 44 72 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 47 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - a - - - ML 89 88 3 91 3 1 1 45 73 -12.248 -0.001 -10.902 0.321 -0.079 -0.540 0.159 D 90 88 3 91 3 0 0 43 71 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 46 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - u - - - ML 92 91 3 94 3 1 1 44 72 -12.248 -0.001 -10.902 0.241 -1.294 -0.490 0.764 D 93 91 3 94 3 0 0 42 70 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 45 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - u - - - ML 95 94 3 97 3 1 1 43 71 -12.248 -0.040 -5.209 0.067 0.337 -1.929 0.513 D 96 94 3 97 3 0 0 40 69 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 44 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - u - - - ML 98 97 3 100 3 1 1 42 70 -12.209 -0.066 -4.490 0.074 0.036 -0.737 0.403 D 99 97 3 100 3 0 0 37 65 -8.704 -4.217 -0.083 IL 100 100 3 100 3 1 1 43 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - a - - - ML 101 100 3 103 3 1 1 41 69 -12.144 -0.046 -4.991 0.733 -0.186 -0.978 -0.073 D 102 100 3 103 3 0 0 35 63 -9.927 -5.440 -0.035 IL 103 103 3 103 3 1 1 42 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - c - - - ML 104 103 3 106 3 1 1 40 68 -12.099 -0.455 -1.887 0.001 0.354 -0.341 -0.102 D 105 103 3 106 3 0 0 33 62 -10.396 -5.909 -0.025 IL 106 106 3 106 3 1 1 41 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - c - - - ML 107 106 3 109 5 1 1 39 68 -0.848 -1.599 -10.410 -3.140 -11.514 -0.464 0.610 -0.002 -0.414 D 108 106 3 109 5 0 0 29 57 -10.113 -0.894 -9.375 -7.749 -1.136 IL 109 109 3 109 5 1 1 39 68 -0.938 -1.073 -9.356 -11.188 -10.462 0.000 0.000 0.000 0.000 [ MATP 31 ] 42 55 c g - - MP 110 109 3 114 6 2 2 24 43 -11.857 -11.797 -0.003 -10.573 -10.853 -11.248 -1.199 -3.582 -3.570 0.392 0.248 -4.422 2.495 -3.906 -3.634 1.468 -0.825 -2.251 0.652 -1.059 0.167 -1.509 ML 111 109 3 114 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 23 42 -9.978 -8.707 -0.128 -8.685 -3.819 -6.899 1.928 -4.229 -3.709 -3.939 D 113 109 3 114 6 0 0 22 41 -13.536 -12.234 -0.060 -8.713 -8.731 -4.806 IL 114 114 5 114 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 43 54 g c - - MP 116 115 6 120 6 2 2 22 41 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -6.539 -5.322 -6.402 -0.390 -6.807 -7.068 2.573 -6.782 -6.679 2.889 -7.001 -0.082 -0.424 -6.341 -4.075 -5.281 ML 117 115 6 120 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 44 53 G C - - MP 122 121 6 126 6 2 2 20 39 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -9.208 -6.747 -9.859 0.486 -11.104 -8.314 -5.878 -9.883 -8.050 3.724 -8.367 0.398 -6.108 -8.571 -8.094 -8.551 ML 123 121 6 126 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 45 52 G C - - MP 128 127 6 132 6 2 2 18 37 -12.211 -12.150 -0.002 -10.926 -11.206 -11.601 -10.061 -6.774 -12.046 -4.214 -11.734 -7.964 -6.071 -11.639 -8.137 3.956 -8.339 -1.446 -6.424 -8.421 -8.504 -10.986 ML 129 127 6 132 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 46 51 G C - - MP 134 133 6 138 4 2 2 16 35 -11.333 -11.540 -0.002 -9.955 -10.116 -6.775 -12.295 -4.238 -11.732 -7.946 -6.063 -11.803 -8.141 3.987 -8.336 -4.701 -6.428 -8.410 -8.502 -11.319 ML 135 133 6 138 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - A - - - ML 140 139 6 142 3 1 1 13 32 -12.248 -0.001 -10.902 1.995 -8.360 -7.617 -7.745 D 141 139 6 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - C - - - ML 143 142 3 145 3 1 1 12 30 -12.248 -0.001 -10.902 -6.341 1.935 -3.647 -3.580 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - G - - - ML 146 145 3 148 3 1 1 10 29 -12.248 -0.001 -10.902 -6.855 -8.624 1.994 -7.616 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - A - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 1.279 -7.049 0.639 -6.948 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Guanidine-II ACC RF01068 DESC Guanidine-II riboswitch aptamer (mini-ykkC) LENG 48 MAXL 102 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 18:53:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01068/CM NSEQ 72 EFFN 72.000000 CKSUM 3079203269 STATS LOCAL MSV -8.2900 0.73285 STATS LOCAL VITERBI -9.0768 0.73285 STATS LOCAL FORWARD -3.5603 0.73285 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59540 1.10284 1.14403 1.91928 1.38629 1.38629 1.38629 1.38629 0.02504 6.60935 3.75561 1.46634 0.26236 0.00000 * 1 1.77854 1.20554 1.12769 1.57116 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.00276 6.58706 6.58706 1.46634 0.26236 2.96282 0.05306 2 1.72747 1.12408 1.20747 1.61766 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.00276 6.58706 6.58706 1.46634 0.26236 0.10909 2.26967 3 2.05583 1.25890 1.09535 1.37190 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 4 2.41147 0.76285 1.56590 1.44783 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 5 1.56899 1.26749 0.80732 2.74644 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 6 1.10281 2.51187 0.61965 3.01971 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 7 3.44929 6.43106 0.03571 6.37499 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 8 5.39790 6.45871 0.00771 6.44728 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 9 0.00321 7.18068 6.66596 6.75456 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 10 6.80188 0.00415 7.13896 6.10360 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 11 6.13757 7.36433 0.00408 6.66550 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 12 0.11819 6.17894 2.23363 6.09006 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 13 6.45103 0.00952 6.38291 5.08180 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 14 6.40525 0.05273 6.35671 3.03697 14 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 15 3.46445 0.80239 2.47456 0.82954 15 c - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 16 2.81979 0.89080 1.25496 1.40663 16 c - - > 1.38629 1.38629 1.38629 1.38629 0.02753 4.20268 4.40602 0.17140 1.84822 1.09861 0.40547 17 1.49637 1.71801 0.76391 2.03414 18 g - - > 1.38629 1.38629 1.38629 1.38629 0.00273 6.59843 6.59843 1.46634 0.26236 2.40290 0.09481 18 1.42668 1.13202 1.22719 1.93517 19 c - - > 1.38629 1.38629 1.38629 1.38629 0.02532 6.59843 3.74470 1.46634 0.26236 0.19956 1.70975 19 1.67227 1.05398 1.23935 1.74835 20 c - - > 1.38629 1.38629 1.38629 1.38629 0.00276 6.58706 6.58706 1.46634 0.26236 2.96282 0.05306 20 1.26544 1.54567 1.13123 1.70332 21 g - - > 1.38629 1.38629 1.38629 1.38629 0.00276 6.58706 6.58706 1.46634 0.26236 0.10909 2.26967 21 1.68993 0.67805 2.28131 1.58129 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 22 1.48693 1.51616 1.37505 1.19880 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 23 2.58695 0.80376 1.52328 1.35050 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 24 1.12778 1.36496 2.12053 1.20102 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 25 1.36633 1.02236 1.92959 1.42709 26 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 26 1.70087 1.09215 1.45893 1.38831 27 c - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 27 1.61553 1.36470 1.24628 1.35408 28 g - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 28 1.16408 1.44127 1.76059 1.27576 29 a - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 29 1.21926 2.28346 1.72594 0.85657 30 u - - - 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 30 1.33994 1.15255 2.72307 1.03104 31 u - - - 1.38629 1.38629 1.38629 1.38629 0.02951 6.60935 3.58516 1.46634 0.26236 1.09861 0.40547 31 1.33514 1.36114 1.89702 1.10716 32 u - - - 1.38629 1.38629 1.38629 1.38629 0.04766 6.58261 3.09759 1.46634 0.26236 3.11695 0.04530 32 0.87794 1.51518 2.06416 1.43687 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03422 6.53785 3.43613 1.46634 0.26236 3.99269 0.01862 33 1.38554 1.14084 1.62281 1.45707 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.31669 6.50663 1.30953 1.46634 0.26236 4.32329 0.01334 34 1.70792 0.96366 1.38802 1.67294 35 c - - - 1.38629 1.38629 1.38629 1.38629 1.12271 0.58113 2.15991 0.75892 0.63143 0.62626 0.76483 35 2.11789 0.83728 1.48563 1.51201 42 c - - < 1.38629 1.38629 1.38629 1.38629 0.00352 6.34518 6.34518 1.46634 0.26236 0.01148 4.47312 36 2.97061 0.98601 0.64909 2.93472 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 37 2.42121 6.34497 0.09717 6.20155 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 38 5.37060 6.43781 0.00793 6.40905 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 39 5.39027 6.44559 0.00779 6.42922 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 40 0.00321 7.18068 6.66596 6.75456 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 41 5.78176 0.04494 3.91418 3.86768 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 42 6.13757 7.36433 0.00408 6.66550 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 43 0.49976 6.27234 0.94312 6.20250 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 44 6.28030 0.01026 6.27161 5.04410 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 45 6.17148 0.03177 6.20057 3.60610 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 46 5.91624 0.19330 5.98793 1.76868 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.00270 6.60935 6.60935 1.46634 0.26236 1.09861 0.40547 47 2.99235 0.76764 0.97869 2.20801 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.17443 6.60935 1.84065 1.46634 0.26236 1.09861 0.40547 48 1.29924 1.64484 0.86150 2.19202 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.00160 6.43653 * 1.46634 0.26236 0.00000 * //