# STOCKHOLM 1.0
#=GF ID mir-548
#=GF AC RF01061
#=GF DE mir-548 microRNA precursor family
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 90.0
#=GF NC 89.9
#=GF TC 90.0
#=GF SE miRBase; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000317;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 16505370
#=GF RT The colorectal microRNAome.
#=GF RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
#=GF RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
#=GF RA Kinzler KW, Vogelstein B, Velculescu VE
#=GF RL Proc Natl Acad Sci U S A. 2006;103:3687-3692.
#=GF RN [2]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing.
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF RN [3]
#=GF RM 20459774
#=GF RT Ultra-high throughput sequencing-based small RNA discovery and discrete
#=GF RT statistical biomarker analysis in a collection of cervical tumours and
#=GF RT matched controls.
#=GF RA Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
#=GF RL BMC Biol. 2010;8:58.
#=GF RN [4]
#=GF RM 20733160
#=GF RT Deep sequencing of the small RNA transcriptome of normal and malignant
#=GF RT human B cells identifies hundreds of novel microRNAs.
#=GF RA Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W,
#=GF RA Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers
#=GF RA CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman
#=GF RA DR, Weinberg JB, Thompson MA, Gill JI, Liu Q, How T, Grubor V, Gao Y,
#=GF RA Patel A, Wu H, Zhu J, Blobe GC, Lipsky PE, Chadburn A, Dave SS
#=GF RL Blood. 2010;116:e118-e127.
#=GF WK Mir-548_microRNA_precursor_family
#=GF SQ 11

AL391356.22/22986-23069  UAUUAGGUUGGUCCAAAAGUAAUUACAGUUUUUGUCUUUGAAAGUAAUGUCAAAAACUGUGAUUACUUUUGCACCAACCUAAUA
AL390966.14/78822-78741  UAUUAGGUUGGUGCAAAGGUAUUUGUGGUUUUUGUCAUUAAA-GUAAUG-CAAAAGCCACAAAUACCUUUGCACCAACCUAAUA
AP004582.2/69378-69295   UAUUACGUUGGUGCAAAAGUAAUUGCCAGUUUUGCCAUUGAAAGUAAUGGUAAAACUCGCAAUUACUUUUGCACCGACCUAAUA
AC009121.8/57560-57477   UAUUAGGUUGGUGCAAAAGUAAUUGUGGUGUUUGCCAUUGAAAGUAAUGACAAAAACCGCGAUUACUUUUGCACCAACCUAAUA
AC005411.1/13879-13796   UAUUAGGUUGGUGCAAAAGUAAUCGCGGUUUUUGUCAUUGAAAGUAAUAGCAAAAACUGCAAUUACUUUUGCACCAACCUAAAA
AC110921.9/174283-174200 AUUUAGGUUGGUGCAAAAGUAAUUGUGGUUUUUGCCAUUGAAAGUAAUGGCAAAAACCACAGUUUCUUUUGCACCAACCUAAUA
AADA01335449.1/302-219   UAUUAGGUUGGUGCAAAAGUAACUGUGGUUUUUGCCAUUGAAAGUAAUGGCAAAAACCGCAGUUACUUUUGCACCAACCUAAUA
AC187360.3/56085-56002   UAUUAGGUUGGUGCGAAAGUAAUUGCAGUUUUUGCUAUUACUUUUGACAGCAAAAACUGCAGUUACUUUCGCACCAACCUAAUA
AC098811.3/48288-48205   UAUUGGGUUGGUGCAAAAGUAAUUGUGGUUUUUGACAUUUCUUUUAAUGGCAAAACCCACAAUUACUUUUGCACCAAUCUAAUA
CT954305.14/33966-34049  UAUUAGGUUGGUGCAAAGGUAAUUGUGGUUUUUACCAUUGAAGGUAAUGGCAAAACCUCCAAUUACUUUUGCACCAACCUAAUA
CAAA01099159.1/1144-1227 UAUUAUGUUGGUACAAAAGUAAUUGUGGUUUUUGCCAUUAAAAGGAAUGGCAAAACCCGCAAUUACUUUUGCAUCAACCUAAUA
#=GC SS_cons             <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<____>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
#=GC RF                  uauuagGuuGGugCaaaaGuaauuGcgGuuuuuGccauugaaagcaauggCaaaaaCcgCaauuaCuuuuGcaCCaaCcuaaua
//
