INFERNAL1/a [1.1.4 | Dec 2020] NAME HBV_epsilon ACC RF01047 DESC HBV RNA encapsidation signal epsilon STATES 187 NODES 38 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Thu Mar 3 15:17:45 2022 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /nfs/production/xfam/users/nancy/3D_updates_SEEDs/RF01047/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 33 EFFN 1.583130 CKSUM 1960607067 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 83.70 NC 38.50 EFP7GF -9.7311 0.71937 ECMLC 0.63938 -5.01267 3.88301 1600000 354277 0.003387 ECMGC 0.41958 -17.46656 -2.33440 1600000 228805 0.001748 ECMLI 0.62294 -3.96223 4.88185 1600000 296380 0.004049 ECMGI 0.46557 -11.83580 0.62593 1600000 132355 0.003022 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 76 95 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 IL 1 1 2 1 6 1 2 78 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 3 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 61 u a - - MP 3 2 3 7 6 2 7 76 95 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.577 -3.346 -3.522 0.322 -2.686 -4.197 1.642 -3.296 -3.521 0.831 -3.952 -1.231 2.937 -3.772 -0.370 -2.403 ML 4 2 3 7 6 1 2 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 2 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 2 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 2 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 60 G C - - MP 9 8 6 13 6 2 6 74 93 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.131 -2.772 -4.189 0.649 -4.697 -4.498 -0.139 -4.499 -3.959 3.440 -4.344 0.045 -0.450 -4.045 -2.140 -3.086 ML 10 8 6 13 6 1 1 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 59 U A - - MP 15 14 6 19 6 2 6 72 91 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.911 -3.725 -3.779 -0.042 -2.783 -4.368 1.538 -3.459 -3.787 0.258 -4.174 -1.633 3.176 -4.072 -0.466 -2.637 ML 16 14 6 19 6 1 1 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 58 u g - - MP 21 20 6 25 6 2 6 70 89 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -2.586 -2.619 -0.624 0.683 -2.197 -3.408 1.758 -2.719 -2.714 0.891 -3.209 -0.903 1.256 -2.845 2.035 -1.762 ML 22 20 6 25 6 1 1 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 57 C G - - MP 27 26 6 31 6 2 5 68 87 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.081 -4.008 -3.847 -0.271 -2.652 -4.309 3.358 -3.425 -3.887 0.007 -4.198 -2.000 0.919 -4.166 -0.068 -2.740 ML 28 26 6 31 6 1 1 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 56 A U - - MP 33 32 6 37 6 2 5 66 85 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 34 32 6 37 6 1 1 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 55 U A - - MP 39 38 6 43 6 2 5 64 83 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.911 -3.725 -3.779 -0.042 -2.783 -4.368 1.538 -3.459 -3.787 0.258 -4.174 -1.633 3.176 -4.072 -0.466 -2.637 ML 40 38 6 43 6 1 1 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 54 G C - - MP 45 44 6 49 6 2 4 62 81 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.554 0.374 -4.857 -4.587 -0.287 -4.775 -4.148 3.567 -4.505 -0.659 -0.680 -4.292 -2.311 -3.435 ML 46 44 6 49 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 53 u g - - MP 51 50 6 55 6 2 4 60 79 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.631 -3.594 -3.458 0.022 -2.384 -3.968 1.888 -3.112 -3.501 0.279 -3.852 -1.671 1.458 -3.754 2.576 -2.399 ML 52 50 6 55 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 52 C G - - MP 57 56 6 61 6 2 4 58 77 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.274 -4.154 -4.009 -0.413 -2.791 -4.456 3.456 -3.573 -4.051 -0.129 -4.340 -2.098 0.749 -4.361 -0.492 -2.900 ML 58 56 6 61 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 51 C G - - MP 63 62 6 67 6 2 4 56 75 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.274 -4.154 -4.009 -0.413 -2.791 -4.456 3.456 -3.573 -4.051 -0.129 -4.340 -2.098 0.749 -4.361 -0.492 -2.900 ML 64 62 6 67 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 50 c g - - MP 69 68 6 73 6 2 3 54 73 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.268 -3.234 -3.229 0.391 -2.351 -3.871 2.363 -3.007 -3.247 0.633 -3.680 -1.301 1.946 -3.452 1.341 -2.168 ML 70 68 6 73 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 49 A U - - MP 75 74 6 79 4 2 2 52 71 -6.799 -7.006 -0.059 -5.420 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 76 74 6 79 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 52 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 51 70 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 54 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 81 80 6 83 3 1 1 49 68 -7.826 -0.023 -6.480 -1.412 1.522 -2.222 -0.893 D 82 80 6 83 3 0 0 48 67 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 84 83 3 86 3 1 1 48 67 -7.826 -0.023 -6.480 -1.235 -1.277 -1.954 1.538 D 85 83 3 86 3 0 0 47 66 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 87 86 3 89 3 1 1 47 66 -7.826 -0.023 -6.480 -0.963 -1.980 1.489 -1.230 D 88 86 3 89 3 0 0 46 65 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 90 89 3 92 3 1 1 46 65 -7.826 -0.023 -6.480 -1.235 -1.277 -1.954 1.538 D 91 89 3 92 3 0 0 45 64 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 93 92 3 95 3 1 1 45 64 -7.826 -0.023 -6.480 -1.235 -1.277 -1.954 1.538 D 94 92 3 95 3 0 0 44 63 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 96 95 3 98 5 1 1 44 62 -6.974 -0.042 -6.789 -7.001 -7.893 -1.412 1.522 -2.222 -0.893 D 97 95 3 98 5 0 0 42 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 44 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 48 A U - - MP 99 98 3 103 6 2 2 43 61 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 100 98 3 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 47 A U - - MP 105 104 6 109 6 2 2 41 59 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 106 104 6 109 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 46 G C - - MP 111 110 6 115 6 2 2 39 57 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.475 -2.968 -4.554 0.374 -4.857 -4.587 -0.287 -4.775 -4.148 3.567 -4.505 -0.659 -0.680 -4.292 -2.311 -3.435 ML 112 110 6 115 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 45 C G - - MP 117 116 6 121 6 2 2 37 55 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.274 -4.154 -4.009 -0.413 -2.791 -4.456 3.456 -3.573 -4.051 -0.129 -4.340 -2.098 0.749 -4.361 -0.492 -2.900 ML 118 116 6 121 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 44 C G - - MP 123 122 6 127 4 2 2 35 53 -6.728 -7.973 -0.089 -4.427 -4.274 -4.154 -4.009 -0.413 -2.791 -4.456 3.456 -3.573 -4.051 -0.129 -4.340 -2.098 0.749 -4.361 -0.492 -2.900 ML 124 122 6 127 4 1 1 34 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 34 52 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 32 51 -12.737 -14.007 -2.036 -0.404 IL 127 127 5 127 4 1 1 34 53 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 43 - U - - MR 129 128 6 131 5 1 1 33 51 -6.974 -0.042 -6.789 -7.001 -7.893 -1.235 -1.277 -1.954 1.538 D 130 128 6 131 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 25 42 u g - - MP 132 131 3 136 6 2 2 32 50 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.724 -3.674 -3.518 -0.047 -2.398 -4.003 1.877 -3.140 -3.561 0.204 -3.896 -1.732 1.264 -3.836 2.699 -2.452 ML 133 131 3 136 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 41 C G - - MP 138 137 6 142 6 2 2 30 48 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.274 -4.154 -4.009 -0.413 -2.791 -4.456 3.456 -3.573 -4.051 -0.129 -4.340 -2.098 0.749 -4.361 -0.492 -2.900 ML 139 137 6 142 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 40 C G - - MP 144 143 6 148 6 2 2 28 46 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -4.065 -3.966 -3.831 -0.225 -2.641 -4.300 3.335 -3.408 -3.867 0.061 -4.180 -1.933 1.084 -4.154 -0.331 -2.718 ML 145 143 6 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 28 39 A U - - MP 150 149 6 154 6 2 2 26 44 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 151 149 6 154 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 38 A U - - MP 156 155 6 160 6 2 2 24 42 -9.052 -8.992 -0.022 -7.768 -8.048 -8.443 -3.572 -2.662 -3.605 3.167 -3.835 -4.880 0.451 -3.660 -3.507 1.317 -4.044 -0.176 0.032 -4.103 -1.491 -2.453 ML 157 155 6 160 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 37 G C - - MP 162 161 6 166 4 2 2 22 40 -6.728 -7.973 -0.089 -4.427 -4.475 -2.968 -4.554 0.374 -4.857 -4.587 -0.287 -4.775 -4.148 3.567 -4.505 -0.659 -0.680 -4.292 -2.311 -3.435 ML 163 161 6 166 4 1 1 21 40 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 21 39 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 38 -12.737 -14.007 -2.036 -0.404 IL 166 166 5 166 4 1 1 21 40 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 40 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 36 - C - - MR 168 167 6 170 5 1 1 20 38 -6.974 -0.042 -6.789 -7.001 -7.893 -1.412 1.522 -2.222 -0.893 D 169 167 6 170 5 0 0 19 37 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 35 C G - - MP 171 170 3 175 4 2 2 19 37 -6.799 -7.006 -0.059 -5.420 -4.070 -3.997 -3.837 -0.261 -2.644 -4.301 3.351 -3.417 -3.877 0.017 -4.189 -1.990 0.928 -4.155 -0.044 -2.730 ML 172 170 3 175 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 3 175 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - U - - - ML 177 176 6 179 3 1 1 15 33 -7.826 -0.023 -6.480 -1.235 -1.277 -1.954 1.538 D 178 176 6 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - G - - - ML 180 179 3 182 3 1 1 13 32 -7.826 -0.023 -6.480 -1.285 -2.456 1.645 -1.842 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.235 -1.277 -1.954 1.538 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HBV_epsilon ACC RF01047 DESC HBV RNA encapsidation signal epsilon LENG 61 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Mar 3 15:17:46 2022 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 33 EFFN 2.533813 CKSUM 1960607067 STATS LOCAL MSV -8.1838 0.71937 STATS LOCAL VITERBI -8.4814 0.71937 STATS LOCAL FORWARD -3.9047 0.71937 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74459 1.35066 1.26197 1.26189 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 0.00000 * 1 2.64211 1.75965 2.19511 0.43798 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 2 2.39027 3.13604 0.20316 3.02011 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 3 3.08602 1.98141 2.84057 0.27701 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 4 1.92035 1.57436 2.18527 0.62763 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 5 3.09691 0.29373 2.87314 1.87853 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 6 0.30607 2.88501 1.91225 2.81236 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 7 3.07370 1.98062 2.83496 0.27833 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 8 2.64328 3.33143 0.15652 3.26964 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 9 2.92734 1.57234 2.71962 0.39601 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 10 3.28571 0.21911 3.07338 2.17958 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 11 3.28488 0.21919 3.07297 2.17943 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 12 2.45128 1.06319 2.22776 0.77502 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 13 0.30667 2.88243 1.91174 2.80871 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 14 2.95673 0.18046 3.53297 2.47807 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 15 2.69563 2.64510 3.21637 0.19674 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 16 2.43987 3.18524 0.22746 2.59158 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 17 2.69563 2.64510 3.21637 0.19674 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 18 2.69563 2.64510 3.21637 0.19674 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 19 2.95673 0.18046 3.53297 2.47807 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 20 0.30583 2.88602 1.91245 2.81381 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 21 0.30599 2.88537 1.91232 2.81287 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 22 2.64468 3.33315 0.15623 3.27202 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 23 3.28939 0.21874 3.07518 2.18024 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 24 3.28798 0.21888 3.07449 2.17999 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 25 2.97599 1.58965 2.78563 0.38080 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 26 3.27234 0.22046 3.06681 2.17719 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 27 3.04107 0.31237 2.81726 1.82798 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 28 0.30679 2.88192 1.91164 2.80798 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 29 0.30671 2.88226 1.91170 2.80847 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 30 2.64114 3.32879 0.15698 3.26599 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 31 3.05323 0.30288 2.84546 1.85792 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 32 2.69563 2.64510 3.21637 0.19674 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 33 2.79337 3.68368 0.13328 3.25883 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 34 2.69563 2.64510 3.21637 0.19674 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 35 2.23997 3.01922 0.24026 2.84256 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 36 2.95673 0.18046 3.53297 2.47807 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 37 3.46229 0.18620 3.16556 2.33980 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 38 3.03323 2.21632 2.69361 0.25464 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 39 3.03419 2.21645 2.69399 0.25453 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 40 2.07156 2.98311 0.27059 2.80600 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 41 2.45885 3.24291 0.18870 3.04946 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 42 1.94387 2.96142 0.29938 2.75160 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 43 2.69563 2.64510 3.21637 0.19674 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 44 2.45748 3.24097 0.18907 3.04716 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 45 2.45761 3.24116 0.18903 3.04738 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 46 3.46541 0.18594 3.16697 2.34040 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 47 3.03282 2.21626 2.69345 0.25469 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 48 3.02873 2.21572 2.69184 0.25516 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 49 3.03183 2.21613 2.69306 0.25480 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 50 1.28347 2.39507 0.64664 2.22604 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 51 2.45673 3.23992 0.18927 3.04592 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 52 2.45710 3.24044 0.18917 3.04653 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 53 1.74677 2.87996 0.35483 2.68477 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 54 3.46776 0.18575 3.16803 2.34084 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 55 0.31569 3.02102 1.81747 2.82135 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 56 3.03942 2.21714 2.69604 0.25393 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 57 2.25210 3.03368 0.23668 2.85703 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 58 1.92493 2.35457 0.43963 2.16365 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 59 0.31432 3.02823 1.81833 2.82993 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 60 3.24894 0.27360 2.96124 1.90520 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90549 3.90549 1.46634 0.26236 1.09861 0.40547 61 0.49351 2.35665 1.59639 2.38425 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.02076 3.88516 * 1.46634 0.26236 0.00000 * //