INFERNAL1/a [1.1.5 | Sep 2023] NAME WLE3 ACC RF01046 DESC Wingless localisation element 3 (WLE3) STATES 136 NODES 29 CLEN 44 W 58 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 20:47:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01046/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 5.444336 CKSUM 574935163 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.30 NC 49.90 EFP7GF -13.8057 0.71965 ECMLC 0.66804 -5.17416 3.82025 1600000 488324 0.002457 ECMGC 0.48956 -17.47030 -3.69902 1600000 338859 0.001180 ECMLI 0.70276 -3.65537 4.71097 1600000 429166 0.002796 ECMGI 0.50076 -14.05145 -1.62918 1600000 201191 0.001988 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 58 77 -9.573 -9.512 -0.347 -2.277 -8.569 -8.964 IL 1 1 2 1 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 1 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 44 U G - - MP 3 2 3 7 6 2 4 58 77 -9.245 -9.185 -0.019 -7.961 -8.241 -8.636 -4.732 -4.677 -4.289 -0.956 -2.873 -4.614 1.424 -3.697 -4.337 -0.869 -4.565 -2.663 0.495 -4.754 3.331 -3.178 ML 4 2 3 7 6 1 2 56 75 -8.492 -8.838 -3.552 -0.162 -8.688 -6.217 -1.923 -1.845 -2.676 1.723 MR 5 2 3 7 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 43 G U - - MP 9 8 6 13 6 2 4 56 75 -9.245 -9.185 -0.019 -7.961 -8.241 -8.636 -4.023 -2.699 -4.214 0.850 -5.249 -6.025 -0.792 -4.196 -3.794 0.806 -4.345 3.407 -1.132 -5.104 -2.729 -2.849 ML 10 8 6 13 6 1 1 55 74 -8.492 -8.838 -0.195 -3.247 -8.688 -6.217 -2.067 -3.356 1.813 -2.743 MR 11 8 6 13 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 42 C G - - MP 15 14 6 19 6 2 4 54 73 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.622 -6.704 -5.920 -2.887 -4.337 -6.060 3.889 -5.384 -6.135 -2.823 -6.070 -4.787 -1.140 -6.553 -2.195 -4.938 ML 16 14 6 19 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 41 U A - - MP 21 20 6 25 6 2 4 52 71 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.778 -6.635 -6.318 -2.864 -4.871 -6.651 -0.563 -5.695 -6.304 -2.850 -6.573 -4.511 3.873 -6.765 -2.473 -4.597 ML 22 20 6 25 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 40 U A - - MP 27 26 6 31 4 2 2 50 69 -7.803 -9.049 -0.042 -5.502 -5.299 -5.335 -4.871 -1.478 -3.410 -5.193 1.607 -4.252 -4.913 -1.354 -5.152 -3.344 3.487 -5.287 -1.080 -3.718 ML 28 26 6 31 4 1 1 50 69 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 49 68 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 47 66 -12.737 -14.007 -2.036 -0.404 IL 31 31 5 31 4 1 1 50 69 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 39 - g - - MR 33 32 6 35 5 1 1 48 67 -7.949 -0.021 -7.764 -7.976 -8.868 0.071 -1.500 0.749 -0.128 D 34 32 6 35 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 38 g c - - MP 36 35 3 40 6 2 2 47 66 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -3.935 -2.820 -3.882 0.754 -4.464 -4.597 0.095 -4.308 -4.070 2.788 -4.439 1.777 -0.213 -3.877 0.401 -2.821 ML 37 35 3 40 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 37 C G - - MP 42 41 6 46 6 2 2 45 64 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.622 -6.704 -5.920 -2.887 -4.337 -6.060 3.889 -5.384 -6.135 -2.823 -6.070 -4.787 -1.140 -6.553 -2.195 -4.938 ML 43 41 6 46 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 36 A U - - MP 48 47 6 52 6 2 2 43 62 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -5.581 -4.319 -5.245 3.856 -6.731 -8.041 -2.339 -5.177 -5.344 -0.882 -5.961 -1.613 -2.708 -6.814 -4.255 -4.160 ML 49 47 6 52 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 35 U A - - MP 54 53 6 58 6 2 2 41 60 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -5.347 -5.415 -5.017 -1.655 -0.156 -5.397 0.655 -4.483 -5.053 -1.547 -5.337 -3.506 3.596 -5.383 -1.343 -3.809 ML 55 53 6 58 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 34 a u - - MP 60 59 6 64 6 2 2 39 58 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -1.850 -2.002 -0.748 2.041 -2.044 -2.890 1.141 -2.389 -2.110 0.953 -0.329 -0.586 1.015 0.150 -0.282 -1.295 ML 61 59 6 64 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 33 C G - - MP 66 65 6 70 4 2 2 37 56 -7.947 -8.154 -0.026 -6.568 -4.832 -4.792 -4.582 -0.866 -3.270 -5.054 3.262 -4.053 -4.578 -0.697 -4.912 -2.684 1.547 -4.905 0.724 -3.385 ML 67 65 6 70 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 39 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 72 71 6 74 5 1 1 35 54 -7.949 -0.021 -7.764 -7.976 -8.868 -1.912 -0.328 -2.694 1.477 D 73 71 6 74 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 74 74 3 74 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 32 G C - - MP 75 74 3 79 4 2 2 34 52 -7.947 -8.154 -0.026 -6.568 -6.496 -3.970 -7.031 -1.072 -7.611 -5.343 -2.546 -7.214 -5.321 3.877 -5.571 -1.778 -2.906 -5.563 -4.724 -5.886 ML 76 74 3 79 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 3 79 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - C - - - ML 81 80 6 83 3 1 1 31 50 -9.255 -0.010 -7.573 -3.849 1.910 -4.560 -2.935 D 82 80 6 83 3 0 0 30 49 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 31 - A - - MR 84 83 3 86 5 1 1 30 49 -7.949 -0.021 -7.764 -7.976 -8.868 1.599 -2.724 -0.683 -2.353 D 85 83 3 86 5 0 0 29 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 30 U A - - MP 87 86 3 91 6 2 2 29 48 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.778 -6.635 -6.318 -2.864 -4.871 -6.651 -0.563 -5.695 -6.304 -2.850 -6.573 -4.511 3.873 -6.765 -2.473 -4.597 ML 88 86 3 91 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 29 U A - - MP 93 92 6 97 6 2 2 27 46 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.778 -6.635 -6.318 -2.864 -4.871 -6.651 -0.563 -5.695 -6.304 -2.850 -6.573 -4.511 3.873 -6.765 -2.473 -4.597 ML 94 92 6 97 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 28 U A - - MP 99 98 6 103 6 2 2 25 44 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.778 -6.635 -6.318 -2.864 -4.871 -6.651 -0.563 -5.695 -6.304 -2.850 -6.573 -4.511 3.873 -6.765 -2.473 -4.597 ML 100 98 6 103 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 27 G C - - MP 105 104 6 109 6 2 2 23 42 -9.573 -9.512 -0.015 -8.289 -8.569 -8.964 -6.496 -3.970 -7.031 -1.072 -7.611 -5.343 -2.546 -7.214 -5.321 3.877 -5.571 -1.778 -2.906 -5.563 -4.724 -5.886 ML 106 104 6 109 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 26 G C - - MP 111 110 6 115 4 2 2 21 40 -7.947 -8.154 -0.026 -6.568 -4.072 -2.860 -3.975 0.733 -4.573 -4.573 1.262 -4.442 -4.204 3.082 -4.532 0.716 -0.198 -3.887 -1.897 -2.912 ML 112 110 6 115 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - C - - - ML 117 116 6 119 3 1 1 18 37 -8.911 -0.011 -7.565 -2.008 1.555 -1.118 -1.501 D 118 116 6 119 3 0 0 18 36 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - C - - - ML 120 119 3 122 3 1 1 17 35 -8.911 -0.011 -7.565 -3.849 1.910 -4.560 -2.935 D 121 119 3 122 3 0 0 17 35 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - A - - - ML 123 122 3 125 3 1 1 16 34 -8.911 -0.011 -7.565 1.599 -2.724 -0.683 -2.353 D 124 122 3 125 3 0 0 16 34 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - G - - - ML 126 125 3 128 3 1 1 14 33 -8.911 -0.011 -7.565 -3.342 -4.763 1.928 -4.084 D 127 125 3 128 3 0 0 15 33 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - G - - - ML 129 128 3 131 3 1 1 12 31 -8.911 -0.011 -7.565 -1.474 -0.777 1.473 -1.833 D 130 128 3 131 3 0 0 13 32 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - a - - - ML 132 131 3 134 2 1 1 1 1 * 0.000 0.981 -0.531 -1.511 -0.024 D 133 131 3 134 2 0 0 0 0 * 0.000 IL 134 134 3 134 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 135 134 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME WLE3 ACC RF01046 DESC Wingless localisation element 3 (WLE3) LENG 44 MAXL 112 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 20:47:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01046/CM NSEQ 10 EFFN 8.305664 CKSUM 574935163 STATS LOCAL MSV -7.1009 0.71965 STATS LOCAL VITERBI -7.5650 0.71965 STATS LOCAL FORWARD -3.9367 0.71965 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42862 1.44616 1.32545 1.35014 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 0.00000 * 1 3.52851 2.17832 3.55052 0.18789 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 2 2.49570 3.78676 0.14347 3.55611 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 3 4.41035 0.05423 4.52016 3.51486 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 4 4.72761 3.72478 4.80188 0.04205 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 5 3.96886 1.76056 3.86193 0.23809 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 6 2.36289 3.03204 0.33812 1.93428 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 7 4.88552 0.04250 4.85283 3.64032 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 8 0.05483 4.72109 3.38933 4.53564 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 9 4.13471 1.90002 4.01660 0.20284 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 10 0.90583 2.07081 1.52608 1.37704 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 11 3.59745 0.42687 3.39337 1.25015 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 12 3.15307 1.62116 3.70068 0.30802 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 13 3.67720 4.72294 0.04412 4.71269 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 14 4.55842 0.03806 4.96775 3.91677 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 15 5.12860 3.79158 5.07509 0.03535 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 16 5.09653 3.78703 5.05454 0.03579 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 17 5.07581 3.78402 5.04114 0.03609 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 18 3.66215 4.69679 0.04512 4.67633 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 19 2.31400 1.82224 0.39050 2.76857 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 20 3.37093 0.22407 2.17464 2.94256 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 21 4.55842 0.03806 4.96775 3.91677 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 22 0.23552 3.72188 1.85449 3.53646 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 23 4.16134 5.19983 0.03095 4.67038 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 24 2.80034 1.88750 0.29731 3.10224 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 25 0.64395 1.78189 2.65845 1.44219 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 26 3.02638 0.55808 1.75437 1.57898 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 27 4.76443 0.05581 4.59106 3.33507 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 28 0.04192 5.24946 3.59758 4.77803 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 29 0.04150 5.27216 3.60202 4.79766 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 30 0.04086 5.30774 3.60882 4.82830 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 31 0.23552 3.72188 1.85449 3.53646 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 32 4.73811 0.05639 4.57625 3.33038 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 33 1.69848 3.55723 0.28279 3.35696 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 34 2.07105 1.51644 1.33974 0.93511 34 u - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 35 0.14164 4.16861 2.34035 3.89719 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 36 4.75934 3.81493 4.54703 0.04208 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 37 3.91938 5.03672 0.03549 4.76563 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 38 3.16621 0.78942 1.91308 1.03253 38 c - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 39 1.36711 2.66315 0.78795 1.51116 39 g - - - 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 40 0.25830 4.04889 1.67363 3.78835 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 41 0.04254 5.21690 3.59108 4.74978 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.01961 4.63479 4.63479 1.46634 0.26236 1.09861 0.40547 42 3.91613 5.03065 0.03565 4.75916 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.49974 4.63479 0.95815 1.46634 0.26236 1.09861 0.40547 43 3.64045 2.51193 3.41490 0.15109 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03150 4.16655 4.16655 1.46634 0.26236 3.72602 0.02438 44 2.60509 3.65472 0.14557 3.33246 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01588 4.15092 * 1.46634 0.26236 0.00000 * //