# STOCKHOLM 1.0
#=GF ID MIR828
#=GF AC RF01026
#=GF DE MIR828 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 69.0
#=GF NC 68.9
#=GF TC 69.1
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000544;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 17182867
#=GF RT A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
#=GF RT thaliana.
#=GF RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP
#=GF RL Genes Dev. 2006;20:3407-3425.
#=GF RN [2]
#=GF RM 20407027
#=GF RT MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.
#=GF RA Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S,
#=GF RA Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC
#=GF RL Plant Cell. 2010;22:1074-1089.
#=GF RN [3]
#=GF RM 20407023
#=GF RT Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA
#=GF RT loci within the Arabidopsis genus.
#=GF RA Ma Z, Coruh C, Axtell MJ
#=GF RL Plant Cell. 2010;22:1090-1103.
#=GF RN [4]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK Mir-828_microRNA_precursor_family
#=GF SQ 16

URS00002BAE2F_3702/42-150  CUAA-UGUUUCUUGCUUAAAUGAGUAUUCCAUGUAAAA--A-UGAUUCACUCACU-CGUAUGGGUGGG----------------------------------------UUGGGUU----UUCUCUUCAUGAGAUGCUCAUUUGAGCAAGCAAUGUUUG
URS0000D5231B_59689/43-156 CUAA-UGUUUCUUGCUUAAAUGAGUAUUCCAUGUAAAA--AAUGAGUCACUCACU-CAUAUGGGUGGG----------------------------------------UUGGGUUGGUUUUCUCUUCAUGAGAUGCUCAUUUGAGCAAGCAAUGUCUG
URS000075C18E_3656/3-116   GCAA-UGUUUCUUGCUCAAAUGAGUAUUCCAAGUCGCACCAGCAAAUGUCAAAAUGCAAACUAAUGCA----------------------------------------U--AUUUUGGUGCUUGUUUUUGCCAUGCUAAUUUGAGUAAGAAAUGU-UG
URS00007E4637_3847/3-111   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAA-CCACAGUCAC--AUUUGGCA----UGAAUAUU-GU---------------------------------------GUGCCA-CUGUCCUCAAAGGAUGAGAUGCUCAUUUGACCAAGCAAUGUUAA
URS00007E4461_3847/3-108   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAA-CCACAGUCAC--AUUUGGCA----UGAAU----GU---------------------------------------GUGCCA-CUGUCCCCAAAGGCUGAGAUGCUCAUUUGAGCAAGCAAUGUUAA
URS0000D5059D_4006/29-146  GUAAACGUUUCUUGCUCAAAUGAGUGUUCCAA-AACCAGCAAGCGAUGGAGCAGUUCUGGGUUCAAAU---------------------------------------ACUCCAUCUGUUGUUUGCAUCUGAGAUGCUCAUUUGGGCAAGCAGUGUUUC
URS0000D51699_38869/1-126  ---------UCUUGCUCAAAUGAGUAUUCCAA---AGAGAUGC--AGAAUGC---UAUGGUUUGUUAA----UCCGUAGAAUAUUCUUGUGUUUCUGUGUAU---CAGUUUGGAAGUGCAUCUGCUUCUGAGAUGCUCAUUUGGGCAAAG--------
URS0000D529CF_3983/8-158   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAA-UCACAGUUGC--AUUUUGCAUACACAAUCUCCUUUGCUUUUCUUUCAGUAUCUCCACUGUAAAUUUUGU---GGUUGCUGAUGCUGCUGUGUCUCUGAGAUGCUCAUUUGAGCAAGUAAUGUUAU
URS0000D54D95_3694/8-149   UUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAA-CAGCAGUAGC--CUUAUGCAACAAGAGCAUAUAUU----UUUUACUUGUAUCACUGUAAUAUGAUGU--------UGCUGGAAUGCUACUGUUUCUGAGAUGCUCAUUUGAGCAAGUAAUAUUAG
URS00007A149E_3694/8-142   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAA-CAACAGUAGC--CUUUUGAAC-AAGAACAUAUGUU----UUUGCCUUGUAUGGUUAUGAUGU-------------UGCUGGUAUUUA-CUGUUUCUGAGAUGCUCAUUCGAGCAAGAAAUAUUAG
URS000075D4B5_3750/9-135   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAG-CCACAGUU----UGCCUGCAGCUUGCAUAUAUAUA-----UAUA----------------UAUAUAUAU----AGCGCUGGUGCUUCUGCAAUUCUGAGAUGCUCAUUUGAGCAAGCAGCGUUAC
URS000075E153_3750/9-151   GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAG-CCACAGUU----UGCAUGCAGCUUGCAUAUAUAUA-----UAUAAGAACAUGUAUGUGUAUAUAUAUAU----AGCACUGGUGCUUCUGCAAUCCUGAGAUGCUCAUUUGGGCAAGCAACGUUAC
URS0000D54B8E_3760/11-116  GUAA-UGUUUCUUGCUCAAAUGAGUAUUCCAAGCCACAGUU-----GCAUGC------AGUUUGCAAG----------------------------------------CACUGGUGCUUCUGCAAUUCUGAGAUGCUCAUUUCAGCAAGCAGCGUUAC
URS00007E4505_29760/2-117  AUAA-AGUUUCUUGCUCAAAUGAGUAUUCCAA---ACAACAGCUUGUGAAGCAAUGAUUACUGUCAUA--------------------------------------GUCUCUGCAUGUGGAUUGUUGUUGAGAUGCUCAUUUGAGGAAGCAACCUUAA
URS0000D53ED6_13333/10-123 CUAA-AGUUUCUUGCUCAAAUGAGUAUUCCAAUCUGCUUUCUC--UCCCUACAUACAAGCUUGAUUU-----------------------------------------UUGGGGCAUGAGAUGGGCUCUGUGAUACUCAUUUCAGCAAGCAACCUUAC
URS0000D54A40_3983/11-165  GGAA-GGCCUCUUGCUCAAAUGAGUAUUCCACAAUCUUCUUAG-AGGAAGACAUAAUUUUCCACUUAAACGUCGUUUCAAUAGUUUACCUUCAUUUCUUUCAGUAGUCAGUCUCUCUAACAGUUGGAAUG-GAUACUCAUUUAGGCAAGAUGCUUUGC
#=GC SS_cons               :::<.<<<<-<<<<<<<<<<<<<<<<<<-<<_.__________.._______________________......................................._____________________>>->>>>>>>>>>>>>>>>>>->>>>>:::
#=GC RF                    gUAA.cguUUCUUGCucAAAUGAGuAUuCCAa.caacAgUaac..auuaugCAuuuauuauuuaUaua.......................................guucuguuuuuucuuuguuucUGAgAUgCUCAUUUgaGCAAGcAacgUUac
//
