INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-611 ACC RF01022 DESC microRNA mir-611 STATES 199 NODES 47 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 03:14:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF01022/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.338867 CKSUM 2273495074 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 90.30 NC 89.50 EFP7GF -8.5730 0.71920 ECMLC 0.68585 -5.29216 3.21236 1600000 409581 0.002930 ECMGC 0.51392 -14.55388 -3.23117 1600000 134644 0.002971 ECMLI 0.66807 -3.65692 4.49653 1600000 278484 0.004309 ECMGI 0.52047 -10.28515 -0.02212 1600000 83541 0.004788 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.683 -6.890 -0.064 -5.304 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 82 102 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 4 2 3 5 3 0 15 80 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 19 81 101 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 7 5 3 8 3 0 14 79 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 80 100 -8.128 -0.022 -6.446 -1.050 -1.127 -1.757 1.466 D 10 8 3 11 3 0 13 78 99 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 17 80 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - A - - MR 12 11 3 14 3 1 17 79 99 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 13 11 3 14 3 0 11 77 97 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 79 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - C - - MR 15 14 3 17 3 1 16 78 98 -8.128 -0.022 -6.446 -1.170 1.425 -1.967 -0.703 D 16 14 3 17 3 0 11 76 96 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 78 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - A - - MR 18 17 3 20 3 1 16 77 97 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 19 17 3 20 3 0 10 75 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 77 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - C - - MR 21 20 3 23 5 1 15 76 96 -6.883 -0.045 -6.698 -6.910 -7.802 -1.170 1.425 -1.967 -0.703 D 22 20 3 23 5 0 9 74 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 13 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 61 G C - - MP 24 23 3 28 6 2 15 75 95 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 25 23 3 28 6 1 11 73 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 9 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 6 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 12 74 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 12 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 60 G C - - MP 30 29 6 34 6 2 13 73 93 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 31 29 6 34 6 1 10 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 8 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 5 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 11 72 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 11 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 59 U A - - MP 36 35 6 40 4 2 11 71 91 -6.683 -6.890 -0.064 -5.304 -3.721 -3.524 -3.608 0.143 -2.658 -4.213 1.657 -3.318 -3.619 0.483 -4.014 -1.436 3.043 -3.887 -0.346 -2.485 ML 37 35 6 40 4 1 9 71 91 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 6 70 91 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 5 69 90 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 10 72 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 10 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - G - - - ML 42 41 6 44 3 1 10 68 88 -8.128 -0.022 -6.446 -1.061 -2.191 1.569 -1.576 D 43 41 6 44 3 0 5 67 87 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 8 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 58 - G - - MR 45 44 3 47 5 1 9 67 87 -6.883 -0.045 -6.698 -6.910 -7.802 -1.061 -2.191 1.569 -1.576 D 46 44 3 47 5 0 3 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 57 A U - - MP 48 47 3 52 6 2 9 66 86 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 49 47 3 52 6 1 5 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 4 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 6 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 6 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 56 G C - - MP 54 53 6 58 6 2 7 64 84 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 55 53 6 58 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 5 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 55 A U - - MP 60 59 6 64 4 2 6 62 82 -6.683 -6.890 -0.064 -5.304 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 61 59 6 64 4 1 3 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 2 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 1 61 81 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 5 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - g - - - ML 66 65 6 68 5 1 4 60 80 -6.883 -0.045 -6.698 -6.910 -7.802 -0.295 -0.965 0.651 0.140 D 67 65 6 68 5 0 0 59 79 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 3 60 80 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 54 c g - - MP 69 68 3 73 4 2 4 59 79 -6.683 -6.890 -0.064 -5.304 -2.846 -2.760 -2.924 0.508 -2.409 -3.611 2.814 -2.942 -2.946 0.790 0.045 -0.991 1.094 -3.097 -0.273 -1.990 ML 70 68 3 73 4 1 1 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 3 73 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 2 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 2 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - G - - - ML 75 74 6 77 3 1 2 57 76 -8.128 -0.022 -6.446 -1.061 -2.191 1.569 -1.576 D 76 74 6 77 3 0 0 55 75 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 53 - G - - MR 78 77 3 80 5 1 2 56 75 -6.883 -0.045 -6.698 -6.910 -7.802 -1.061 -2.191 1.569 -1.576 D 79 77 3 80 5 0 0 54 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 52 u g - - MP 81 80 3 85 6 2 3 55 74 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.616 -3.514 -3.425 0.103 -2.343 -3.931 1.928 -3.066 -3.461 0.383 -3.804 -1.529 1.153 -3.744 2.625 -2.358 ML 82 80 3 85 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 51 u g - - MP 87 86 6 91 6 2 3 53 72 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.616 -3.514 -3.425 0.103 -2.343 -3.931 1.928 -3.066 -3.461 0.383 -3.804 -1.529 1.153 -3.744 2.625 -2.358 ML 88 86 6 91 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 50 G C - - MP 93 92 6 97 6 2 3 51 70 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.314 0.106 -3.386 1.010 -3.718 -4.009 0.468 -3.720 -3.370 3.046 -3.802 -0.175 0.187 -3.392 -1.405 -2.382 ML 94 92 6 97 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 49 A U - - MP 99 98 6 103 6 2 3 49 68 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 100 98 6 103 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 48 G C - - MP 105 104 6 109 6 2 2 47 66 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 106 104 6 109 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 47 G C - - MP 111 110 6 115 6 2 2 45 64 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 112 110 6 115 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 46 G C - - MP 117 116 6 121 6 2 2 43 62 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 118 116 6 121 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 45 G C - - MP 123 122 6 127 4 2 2 41 60 -6.683 -6.890 -0.064 -5.304 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 124 122 6 127 4 1 1 41 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 129 128 6 131 3 1 1 38 57 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 130 128 6 131 3 0 0 37 56 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - G - - - ML 132 131 3 134 3 1 1 37 56 -7.720 -0.024 -6.374 -1.061 -2.191 1.569 -1.576 D 133 131 3 134 3 0 0 36 55 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - U - - - ML 135 134 3 137 5 1 1 36 55 -6.883 -0.045 -6.698 -6.910 -7.802 -1.050 -1.127 -1.757 1.466 D 136 134 3 137 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 137 137 3 137 5 1 1 36 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 44 U A - - MP 138 137 3 142 6 2 2 35 54 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.721 -3.524 -3.608 0.143 -2.658 -4.213 1.657 -3.318 -3.619 0.483 -4.014 -1.436 3.043 -3.887 -0.346 -2.485 ML 139 137 3 142 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 43 C G - - MP 144 143 6 148 6 2 2 33 52 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 145 143 6 148 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 42 C G - - MP 150 149 6 154 4 2 2 31 50 -6.683 -6.890 -0.064 -5.304 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 151 149 6 154 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - a - - - ML 156 155 6 158 3 1 1 28 47 -7.720 -0.024 -6.374 0.832 -0.182 -0.946 -0.288 D 157 155 6 158 3 0 0 27 46 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - G - - - ML 159 158 3 161 3 1 1 27 46 -7.720 -0.024 -6.374 -1.061 -2.191 1.569 -1.576 D 160 158 3 161 3 0 0 26 45 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - A - - - ML 162 161 3 164 3 1 1 26 45 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 163 161 3 164 3 0 0 25 44 -5.620 -0.734 -1.403 IL 164 164 3 164 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 41 - A - - MR 165 164 3 167 5 1 1 25 44 -6.883 -0.045 -6.698 -6.910 -7.802 1.590 -1.887 -1.568 -1.386 D 166 164 3 167 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 167 167 3 167 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 40 C G - - MP 168 167 3 172 6 2 2 24 43 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 169 167 3 172 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 3 172 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 3 172 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 32 39 G C - - MP 174 173 6 178 4 2 2 22 41 -6.683 -6.890 -0.064 -5.304 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 175 173 6 178 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - G - - - ML 180 179 6 182 3 1 1 19 38 -7.720 -0.024 -6.374 -1.061 -2.191 1.569 -1.576 D 181 179 6 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 183 182 3 185 3 1 1 18 36 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - G - - - ML 186 185 3 188 3 1 1 16 35 -7.720 -0.024 -6.374 -1.061 -2.191 1.569 -1.576 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - A - - - ML 189 188 3 191 3 1 1 15 33 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - U - - - ML 192 191 3 194 3 1 1 13 32 -7.720 -0.024 -6.374 -1.050 -1.127 -1.757 1.466 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - G - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.061 -2.191 1.569 -1.576 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-611 ACC RF01022 DESC microRNA mir-611 LENG 65 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 03:14:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF01022/CM NSEQ 3 EFFN 1.959961 CKSUM 2273495074 STATS LOCAL MSV -8.1079 0.71920 STATS LOCAL VITERBI -9.0217 0.71920 STATS LOCAL FORWARD -3.4445 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44400 1.45741 1.07108 1.66844 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 0.00000 * 1 0.19132 3.04644 2.78968 2.73086 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 2 0.19132 3.04644 2.78968 2.73086 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 3 2.43106 2.42591 2.94036 0.26031 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 4 2.46022 3.03753 0.20357 2.97949 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 5 2.46209 3.03954 0.20308 2.98235 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 6 2.76352 1.75263 2.48914 0.38473 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 7 2.49914 3.34760 0.18767 2.92264 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 8 0.43083 2.54477 1.67026 2.48479 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 9 2.46242 3.03990 0.20299 2.98286 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 10 0.43046 2.54583 1.67038 2.48641 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 11 1.70073 2.17493 0.83568 1.30839 11 g - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 12 2.29061 0.73662 1.50605 1.61806 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 13 2.49914 3.34760 0.18767 2.92264 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 14 2.76132 1.48598 2.52852 0.46087 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 15 2.76375 1.48589 2.52955 0.46053 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 16 1.56169 2.54950 0.47353 2.41576 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 17 0.43049 2.54576 1.67037 2.48631 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 18 2.46240 3.03988 0.20300 2.98284 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 19 2.46204 3.03949 0.20309 2.98228 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 20 2.46169 3.03912 0.20318 2.98175 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 21 2.46138 3.03878 0.20327 2.98127 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 22 0.19132 3.04644 2.78968 2.73086 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 23 2.49914 3.34760 0.18767 2.92264 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 24 2.43106 2.42591 2.94036 0.26031 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 25 2.76381 1.75264 2.48926 0.38469 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 26 3.00394 0.29261 2.75325 1.96345 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 27 3.00349 0.29267 2.75305 1.96338 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 28 0.74411 1.48897 2.15835 1.69434 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 29 2.49914 3.34760 0.18767 2.92264 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 30 0.19132 3.04644 2.78968 2.73086 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 31 3.00047 0.29308 2.75172 1.96288 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 32 2.46265 3.04015 0.20293 2.98322 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 33 2.49914 3.34760 0.18767 2.92264 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 34 0.19132 3.04644 2.78968 2.73086 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 35 2.49914 3.34760 0.18767 2.92264 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 36 0.19132 3.04644 2.78968 2.73086 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 37 2.43106 2.42591 2.94036 0.26031 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 38 2.49914 3.34760 0.18767 2.92264 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 39 3.20314 0.23774 2.87539 2.16663 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 40 2.24264 2.92480 0.25197 2.76651 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 41 0.19132 3.04644 2.78968 2.73086 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 42 2.23718 2.91792 0.25390 2.75783 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 43 2.23595 2.91638 0.25434 2.75589 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 44 0.43864 2.66464 1.58926 2.50858 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 45 3.19114 0.23906 2.87039 2.16432 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 46 3.19220 0.23894 2.87083 2.16453 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 47 3.19350 0.23880 2.87138 2.16478 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 48 3.19511 0.23862 2.87205 2.16509 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 49 2.71718 1.94265 2.36012 0.36211 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 50 2.64921 0.41641 2.36341 1.73849 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 51 2.00475 2.70605 0.33192 2.51377 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 52 2.00558 2.70716 0.33151 2.51514 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 53 2.49914 3.34760 0.18767 2.92264 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 54 1.86484 2.22067 0.49391 2.06905 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 55 2.71861 1.94277 2.36060 0.36188 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 56 3.20286 0.23777 2.87527 2.16658 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 57 2.72275 1.94313 2.36201 0.36123 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 58 2.49914 3.34760 0.18767 2.92264 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 59 0.43692 2.67068 1.58951 2.51644 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 60 3.20244 0.23782 2.87510 2.16650 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 61 3.20650 0.23737 2.87679 2.16727 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 62 2.61285 0.25523 3.18449 2.20243 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 63 0.19132 3.04644 2.78968 2.73086 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 64 2.61285 0.25523 3.18449 2.20243 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04487 3.81956 3.81956 1.46634 0.26236 1.09861 0.40547 65 0.19132 3.04644 2.78968 2.73086 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02268 3.79737 * 1.46634 0.26236 0.00000 * //